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The map label for this gene is trbC

Identifier: 16519686

GI number: 16519686

Start: 533475

End: 533858

Strand: Reverse

Name: trbC

Synonym: NGR_a04200

Alternate gene names: 16519686

Gene position: 533858-533475 (Counterclockwise)

Preceding gene: 16519685

Following gene: 16519687

Centisome position: 99.57

GC content: 62.76

Gene sequence:

>384_bases
ATGTCGCGTAAGAATGAATTTATCTCCATCGCGCTTCTTGCTTCGCCACTCATTTTGGCGTCGGTAGCACCGGCACTGGC
CAGTTCAGGCGGCAGTCTGCCCTGGGAAGGACCGCTCGAGCAGATCCAGGAGTCCATCACGGGGCCAGTCGCGGGCTACA
TAGCACTTGCGGCAGTCGCGATCGCCGGCGGCATGCTGATTTTCGGCGGTGAGCTGAACGATTTCGCGCGGCGGCTGATG
TATGTCGTGCTTGTTGCCGGCATCCTCCTCGGCGCCACGACCATTGTCGGCCTGTTCGGCGCGACCGGCGCTTCGATCGG
CCTGACCAATGATCGCGCCACTTCGACGCGCCCGAGTGCAGAAGGGGAGGGGGCACATGGCTGA

Upstream 100 bases:

>100_bases
CGAGGCCGGCGTGTGCGCGACATCATCCAGGTCGAGCGCTTCGCCAACGGCCGATACGAGATCGAATCTGACCAACTCAC
CGAAGAACGGGAGGAGCGGC

Downstream 100 bases:

>100_bases
GGCGCTATCCGAACGTTACCGCAATCGCATTCACCGTGCGCTCTCCCGGCCGAACCTCCTGATGGGCGCGGACCGGGAAC
TGGTTTTGATCACCGGGCTT

Product: conjugal transfer protein TrbC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 126

Protein sequence:

>127_residues
MSRKNEFISIALLASPLILASVAPALASSGGSLPWEGPLEQIQESITGPVAGYIALAAVAIAGGMLIFGGELNDFARRLM
YVVLVAGILLGATTIVGLFGATGASIGLTNDRATSTRPSAEGEGAHG

Sequences:

>Translated_127_residues
MSRKNEFISIALLASPLILASVAPALASSGGSLPWEGPLEQIQESITGPVAGYIALAAVAIAGGMLIFGGELNDFARRLM
YVVLVAGILLGATTIVGLFGATGASIGLTNDRATSTRPSAEGEGAHG
>Mature_126_residues
SRKNEFISIALLASPLILASVAPALASSGGSLPWEGPLEQIQESITGPVAGYIALAAVAIAGGMLIFGGELNDFARRLMY
VVLVAGILLGATTIVGLFGATGASIGLTNDRATSTRPSAEGEGAHG

Specific function: Unknown

COG id: COG3838

COG function: function code U; Type IV secretory pathway, VirB2 components (pilins)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbC family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TRBC_RHISN (P55396)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443806.1
- GeneID:   962556
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a04200
- HOGENOM:   HBG623876
- ProtClustDB:   CLSK782166
- GO:   GO:0000746
- InterPro:   IPR007039

Pfam domain/function: PF04956 TrbC

EC number: NA

Molecular weight: Translated: 12738; Mature: 12607

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xc908938)-; HASH(0xb9fdb74)-; HASH(0xc584ee4)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRKNEFISIALLASPLILASVAPALASSGGSLPWEGPLEQIQESITGPVAGYIALAAVA
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHH
IAGGMLIFGGELNDFARRLMYVVLVAGILLGATTIVGLFGATGASIGLTNDRATSTRPSA
HHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
EGEGAHG
CCCCCCH
>Mature Secondary Structure 
SRKNEFISIALLASPLILASVAPALASSGGSLPWEGPLEQIQESITGPVAGYIALAAVA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHH
IAGGMLIFGGELNDFARRLMYVVLVAGILLGATTIVGLFGATGASIGLTNDRATSTRPSA
HHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
EGEGAHG
CCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424