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The map label for this gene is trbD

Identifier: 16519687

GI number: 16519687

Start: 533183

End: 533482

Strand: Reverse

Name: trbD

Synonym: NGR_a04190

Alternate gene names: 16519687

Gene position: 533482-533183 (Counterclockwise)

Preceding gene: 16519686

Following gene: 16519688

Centisome position: 99.5

GC content: 60.0

Gene sequence:

>300_bases
ATGGCTGAGGCGCTATCCGAACGTTACCGCAATCGCATTCACCGTGCGCTCTCCCGGCCGAACCTCCTGATGGGCGCGGA
CCGGGAACTGGTTTTGATCACCGGGCTTGCCGCGGTCATCCTGATCTTTGTGGTGCTGACTGTCTACTCGGCGCTCTTCG
GGGTTGTCGTGTGGATCGTGATCGTCGGCTTGCTCCGCATGATGGCGAAGTCCGATCCGCTGATGCGGCAGGTCTATGTC
CGGCACATTTCCTACAAACCCTACTACAAGGCGACCACCTCTCCGTGGCGGCGGTATTGA

Upstream 100 bases:

>100_bases
ACGACCATTGTCGGCCTGTTCGGCGCGACCGGCGCTTCGATCGGCCTGACCAATGATCGCGCCACTTCGACGCGCCCGAG
TGCAGAAGGGGAGGGGGCAC

Downstream 100 bases:

>100_bases
GGAGGCTGATATGGTCGCGCTCAAACGGTTTCGGGCAACCGGCCCATCCTTCGCGGATCTCGTCCCCTATGCCGGCCTGG
TCGACAACGGCGTGCTTCTG

Product: conjugal transfer protein TrbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 99; Mature: 98

Protein sequence:

>99_residues
MAEALSERYRNRIHRALSRPNLLMGADRELVLITGLAAVILIFVVLTVYSALFGVVVWIVIVGLLRMMAKSDPLMRQVYV
RHISYKPYYKATTSPWRRY

Sequences:

>Translated_99_residues
MAEALSERYRNRIHRALSRPNLLMGADRELVLITGLAAVILIFVVLTVYSALFGVVVWIVIVGLLRMMAKSDPLMRQVYV
RHISYKPYYKATTSPWRRY
>Mature_98_residues
AEALSERYRNRIHRALSRPNLLMGADRELVLITGLAAVILIFVVLTVYSALFGVVVWIVIVGLLRMMAKSDPLMRQVYVR
HISYKPYYKATTSPWRRY

Specific function: Unknown

COG id: COG5268

COG function: function code NU; Type IV secretory pathway, TrbD component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TRBD_RHISN (P55397)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443807.1
- GeneID:   962269
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a04190
- HOGENOM:   HBG300411
- ProtClustDB:   PRK13823
- GO:   GO:0000746
- InterPro:   IPR016704
- InterPro:   IPR007792
- PIRSF:   PIRSF017854

Pfam domain/function: PF05101 VirB3

EC number: NA

Molecular weight: Translated: 11470; Mature: 11339

Theoretical pI: Translated: 10.91; Mature: 10.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xc75b688)-; HASH(0xb8a6624)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEALSERYRNRIHRALSRPNLLMGADRELVLITGLAAVILIFVVLTVYSALFGVVVWIV
CCHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVGLLRMMAKSDPLMRQVYVRHISYKPYYKATTSPWRRY
HHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCH
>Mature Secondary Structure 
AEALSERYRNRIHRALSRPNLLMGADRELVLITGLAAVILIFVVLTVYSALFGVVVWIV
CHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVGLLRMMAKSDPLMRQVYVRHISYKPYYKATTSPWRRY
HHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424