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The map label for this gene is trbB

Identifier: 16519685

GI number: 16519685

Start: 533848

End: 534825

Strand: Reverse

Name: trbB

Synonym: NGR_a04210

Alternate gene names: 16519685

Gene position: 534825-533848 (Counterclockwise)

Preceding gene: 16519684

Following gene: 16519686

Centisome position: 99.75

GC content: 61.04

Gene sequence:

>978_bases
GTGGAACAGCTTCGCTCTCATCCTCGCCTCGTCCGCAAGCTTCAGGAGGCGCTTGGCGACCAGCTCTGCGTTGCTTTGGA
CGATAGCAACGTAGTAGAGATAATGCTGAATCCCGATGGTAAGCTGTTCATAGAACGGCTCGGGCACGGCGTCGCGCCCG
CTGGCGAGATGTCGTCGGCTGCGGCGGAAATGGTGATTGGGACGGTTGCTCATGCCCTCCAATCCGAAGTGGACACCGAA
CAACCCATCATTTCCGGTGAGCTTCCGATAGGCGGACATCGTTTCGAGGGTCTATTGCCGCCAGTGGTCGCGAAGCCCTC
CTTCACAATCCGTCGTCGGGCATCTCGCCTGATCCCACTCGACGACTATGTCCGCTCCGGTGTGATGACCGAGGCCCAGG
CTGCGACGATCCGCAGCGCCATTGACTCACGCCTCAACATCATCATTTCCGGTGGAACTGCCTCCGGCAAAACGACGCTC
GCAAATGCAGTAATCCATGAGATCGTGAGGAGCGCGCCGGAAGACCGGCTCGTCATCCTCGAAGACACCGCCGAAATCCA
GTGTGCGGCCGACAACGCCGTTCTTCTTCGTACCAGCGATACGGTTGACATGGCGCGGCTGCTCAAGAGCACGATGCGCC
TGCGTCCCGACCGAATAGTCGTCGGCGAGGTGCGCGATGGTGCTGCCCTCACCTTGCTCAAGGCATGGAACACCGGACAT
CCAGGCGGCGTGGCAACAATCCACTCGAACACGGCGACTTCCGCGCTCCGGCGCCTGGAGCAGCTGACGGCCGAAGCAAG
CCAACAGCCGATGCACGAGGTGATCGGGGAGGTTGTCGACCTCATCGTTTCCATCGAGCGTACGCCGCGAGGCCGGCGTG
TGCGCGACATCATCCAGGTCGAGCGCTTCGCCAACGGCCGATACGAGATCGAATCTGACCAACTCACCGAAGAACGGGAG
GAGCGGCATGTCGCGTAA

Upstream 100 bases:

>100_bases
ACTCTGCCGGCAAAGGCAGACACATTCATGAGGCTCCGCCCCGCCAACTACCGCTCTCAAATCATCAGCACTTTTGGCCA
ATCAGCGTAAGGAGAAATCA

Downstream 100 bases:

>100_bases
GAATGAATTTATCTCCATCGCGCTTCTTGCTTCGCCACTCATTTTGGCGTCGGTAGCACCGGCACTGGCCAGTTCAGGCG
GCAGTCTGCCCTGGGAAGGA

Product: conjugal transfer protein TrbB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MEQLRSHPRLVRKLQEALGDQLCVALDDSNVVEIMLNPDGKLFIERLGHGVAPAGEMSSAAAEMVIGTVAHALQSEVDTE
QPIISGELPIGGHRFEGLLPPVVAKPSFTIRRRASRLIPLDDYVRSGVMTEAQAATIRSAIDSRLNIIISGGTASGKTTL
ANAVIHEIVRSAPEDRLVILEDTAEIQCAADNAVLLRTSDTVDMARLLKSTMRLRPDRIVVGEVRDGAALTLLKAWNTGH
PGGVATIHSNTATSALRRLEQLTAEASQQPMHEVIGEVVDLIVSIERTPRGRRVRDIIQVERFANGRYEIESDQLTEERE
ERHVA

Sequences:

>Translated_325_residues
MEQLRSHPRLVRKLQEALGDQLCVALDDSNVVEIMLNPDGKLFIERLGHGVAPAGEMSSAAAEMVIGTVAHALQSEVDTE
QPIISGELPIGGHRFEGLLPPVVAKPSFTIRRRASRLIPLDDYVRSGVMTEAQAATIRSAIDSRLNIIISGGTASGKTTL
ANAVIHEIVRSAPEDRLVILEDTAEIQCAADNAVLLRTSDTVDMARLLKSTMRLRPDRIVVGEVRDGAALTLLKAWNTGH
PGGVATIHSNTATSALRRLEQLTAEASQQPMHEVIGEVVDLIVSIERTPRGRRVRDIIQVERFANGRYEIESDQLTEERE
ERHVA
>Mature_325_residues
MEQLRSHPRLVRKLQEALGDQLCVALDDSNVVEIMLNPDGKLFIERLGHGVAPAGEMSSAAAEMVIGTVAHALQSEVDTE
QPIISGELPIGGHRFEGLLPPVVAKPSFTIRRRASRLIPLDDYVRSGVMTEAQAATIRSAIDSRLNIIISGGTASGKTTL
ANAVIHEIVRSAPEDRLVILEDTAEIQCAADNAVLLRTSDTVDMARLLKSTMRLRPDRIVVGEVRDGAALTLLKAWNTGH
PGGVATIHSNTATSALRRLEQLTAEASQQPMHEVIGEVVDLIVSIERTPRGRRVRDIIQVERFANGRYEIESDQLTEERE
ERHVA

Specific function: Involved In A General Secretion Pathway (Gsp) For The Export Of Proteins (By Similarity). [C]

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Probable)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TRBB_RHISN (P55395)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443805.1
- ProteinModelPortal:   P55395
- SMR:   P55395
- GeneID:   962557
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a04210
- HOGENOM:   HBG742142
- ProtClustDB:   PRK13833
- GO:   GO:0005737
- GO:   GO:0000746
- GO:   GO:0006810
- InterPro:   IPR014149
- InterPro:   IPR001482
- TIGRFAMs:   TIGR02782

Pfam domain/function: PF00437 GSPII_E

EC number: NA

Molecular weight: Translated: 35466; Mature: 35466

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: PS00662 T2SP_E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQLRSHPRLVRKLQEALGDQLCVALDDSNVVEIMLNPDGKLFIERLGHGVAPAGEMSSA
CCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCHHHHHHHCCCCCCCCHHHHH
AAEMVIGTVAHALQSEVDTEQPIISGELPIGGHRFEGLLPPVVAKPSFTIRRRASRLIPL
HHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCH
DDYVRSGVMTEAQAATIRSAIDSRLNIIISGGTASGKTTLANAVIHEIVRSAPEDRLVIL
HHHHHCCCCCHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEE
EDTAEIQCAADNAVLLRTSDTVDMARLLKSTMRLRPDRIVVGEVRDGAALTLLKAWNTGH
ECCCEEEEECCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCC
PGGVATIHSNTATSALRRLEQLTAEASQQPMHEVIGEVVDLIVSIERTPRGRRVRDIIQV
CCCEEEEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
ERFANGRYEIESDQLTEEREERHVA
HHHCCCCEEECCHHHHHHHHHCCCC
>Mature Secondary Structure
MEQLRSHPRLVRKLQEALGDQLCVALDDSNVVEIMLNPDGKLFIERLGHGVAPAGEMSSA
CCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCHHHHHHHCCCCCCCCHHHHH
AAEMVIGTVAHALQSEVDTEQPIISGELPIGGHRFEGLLPPVVAKPSFTIRRRASRLIPL
HHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCH
DDYVRSGVMTEAQAATIRSAIDSRLNIIISGGTASGKTTLANAVIHEIVRSAPEDRLVIL
HHHHHCCCCCHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEE
EDTAEIQCAADNAVLLRTSDTVDMARLLKSTMRLRPDRIVVGEVRDGAALTLLKAWNTGH
ECCCEEEEECCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCC
PGGVATIHSNTATSALRRLEQLTAEASQQPMHEVIGEVVDLIVSIERTPRGRRVRDIIQV
CCCEEEEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
ERFANGRYEIESDQLTEEREERHVA
HHHCCCCEEECCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424