Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
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Accession | NC_000914 |
Length | 536,165 |
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Identifier: 16519672
GI number: 16519672
Start: 18466
End: 20286
Strand: Reverse
Name: Not Available
Synonym: NGR_a00150
Alternate gene names: NA
Gene position: 20286-18466 (Counterclockwise)
Preceding gene: 16519671
Following gene: 16519679
Centisome position: 3.78
GC content: 57.22
Gene sequence:
>1821_bases ATGTCTCAATCTATACAAATTAACCGCTCTGCCGCTGACGCATGGTCGCAGCTGGTCAAAGGCGGAGCCCTCGACATTGA TGGCCGCGACAAAGAGTTCGCCGGGGCGATCTGCAAGATGCTGGACCCGACGGGAACTGATCTCGGGGACGCGCTCGCGA AAGCGACGACAGATCAGCTAATCCAGGTGTTCTTTCGTGCCCTCCAGCCTTTCTCAGAAATGTACCGTGAAATCCTACGG TTTTTCACAACAGCCGGCGCAAAATACGGGCGGGACCAATGGCGGATTGGGATTAGCGAAAAGCACTTCGAGCTGTCTGA CTTTGAAGATTTCGTGCGGATGTGGGACGGCGTTCCCGGTGAAATCGATGTTCCGGCATTGGGACATGAAGACTTTGGCA TTGTTTGGCTTGCCTGGGAAGCGTATCCGCAACTAGGAAACGTCGCCAATAAGGCGGCGCGAGAACCTGCCGAGCTCGGA ATTGCCGACGTCGATCGGTGGCTCGTCGACTACCGATCGGGCCAAATCAACCCCCTCCCACTATCGGTGCTATCAGAACA ACAGGACGCAGGTTTCCGAGAATTGGCCGCACTGGTCGCCACAGTTCATGAGGGATTGGTGGCGTTTAGTCAGAACCGAG CTGTGTTGCGGTCGCAATTCGATTGGCGAACGTTGAAGGGCAGTGATGCTTTTTCAGTCAACCAACTTGCCTTCCTCGAT ACGGACAACTGGCTGGGGACAGCTGTCGCAGGCCTGGCGCTGGCAAAGGGGATCGCCCCTGAAAGCAGAAGCAGAATCGC CCGCGTTCTCCAAAATGCGTTCGAGGGTCTGCCAACTCGCAAGCTGAAAGCGAGAGTCTCCTTGAACGATCTCGACCGGT TTTTGTCATTGCCGGTTTGGCAGAAGCGCCACGAGATCTATGCGGTCTGGGTATTCACAGAATTAGCTGCGGCCGCGAAT GAGCACGACCTGGAGATATATCACGACCAAGGTAGGATCGCCTTCGAGTTCCGGGAGTCTCGACTTGCCACTGTCACGTC GGCACGGCCACCAATCGATATGATAACGGAGCGTCGCTCTCCAATTGCAAATCCAGTCGGCGCTGGTCGAACCGCCAATG TCCAGCCAGATTTCGGACTTTGGGCACGCGATCCGGGGGCCGAGCGCTGCGCTCTGGTGGTCGAGGTGAAGCACTATAAA CGCACCGCGAAGAAGTCGTTTTCGGAAGTCATGACCGACTATGCGGCTGCTCATCCGAATGCGCCGATCGTTCTGGTCAA CTACGGTCCGATCGGCGACATTCTGGACTGCATCCCGCTCAGCGCGAAGGCTCGTTGCGCCACCGTCGAGCACCTGACTG CCCTCAACCGGACAGCCAGGGAGGAATTTCGAGACTTGGTTCGAAAGGTGATTGGATGGCCAGTGCGGGCGGCGCCCGAG ATCGGAGGGACAACCCGGGCGAAAAGTGCTGTCGCGGTCGATGTCTCGCGTTCCATGGCTCCAGTCCTGAGCGATCCTCG ATTCAGCTCCGCGCTGGCCGCGATTGCGGTGGCGCCGCACGCCTCTGAAATCTTTCCCATCGATCGACGTGTCCACACCG CAATTTCGGTCGAGCAGGCGATCGAGCGGCTGCGTAGCATCCAAGGCGACATAAACGCGTTGGAAGCTCCGGTTACTGAG CTGCTTGGGACTTATGACGAAGTGATCGTTTTGACGGATCGGGATGGGCTTAACGATTTGAGCGCATTAAGATCGGCAAG TGAGGAATTTGCCGCAGGTAGCTTTTTCCGGGTGACTGTCAGCAGGCCTGAGTCGACGTGA
Upstream 100 bases:
>100_bases ACGCCTGCGTCAGCGCGTTCGGGCATAACAGAACATCTGAACCAGTAGACTCCTATGCGGCCCTCTCACCAGTCATGCCC AACGGAGTATGGAACGTCAA
Downstream 100 bases:
>100_bases TCGGCCGAGGCTCGCCGCCAACCGATTAGACTACCCATCACAGCATTGCCCCCGGCAGAAATGCCGGGGGCAATGTTTGA ATTCTTCCCGTCGGGAGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 606; Mature: 605
Protein sequence:
>606_residues MSQSIQINRSAADAWSQLVKGGALDIDGRDKEFAGAICKMLDPTGTDLGDALAKATTDQLIQVFFRALQPFSEMYREILR FFTTAGAKYGRDQWRIGISEKHFELSDFEDFVRMWDGVPGEIDVPALGHEDFGIVWLAWEAYPQLGNVANKAAREPAELG IADVDRWLVDYRSGQINPLPLSVLSEQQDAGFRELAALVATVHEGLVAFSQNRAVLRSQFDWRTLKGSDAFSVNQLAFLD TDNWLGTAVAGLALAKGIAPESRSRIARVLQNAFEGLPTRKLKARVSLNDLDRFLSLPVWQKRHEIYAVWVFTELAAAAN EHDLEIYHDQGRIAFEFRESRLATVTSARPPIDMITERRSPIANPVGAGRTANVQPDFGLWARDPGAERCALVVEVKHYK RTAKKSFSEVMTDYAAAHPNAPIVLVNYGPIGDILDCIPLSAKARCATVEHLTALNRTAREEFRDLVRKVIGWPVRAAPE IGGTTRAKSAVAVDVSRSMAPVLSDPRFSSALAAIAVAPHASEIFPIDRRVHTAISVEQAIERLRSIQGDINALEAPVTE LLGTYDEVIVLTDRDGLNDLSALRSASEEFAAGSFFRVTVSRPEST
Sequences:
>Translated_606_residues MSQSIQINRSAADAWSQLVKGGALDIDGRDKEFAGAICKMLDPTGTDLGDALAKATTDQLIQVFFRALQPFSEMYREILR FFTTAGAKYGRDQWRIGISEKHFELSDFEDFVRMWDGVPGEIDVPALGHEDFGIVWLAWEAYPQLGNVANKAAREPAELG IADVDRWLVDYRSGQINPLPLSVLSEQQDAGFRELAALVATVHEGLVAFSQNRAVLRSQFDWRTLKGSDAFSVNQLAFLD TDNWLGTAVAGLALAKGIAPESRSRIARVLQNAFEGLPTRKLKARVSLNDLDRFLSLPVWQKRHEIYAVWVFTELAAAAN EHDLEIYHDQGRIAFEFRESRLATVTSARPPIDMITERRSPIANPVGAGRTANVQPDFGLWARDPGAERCALVVEVKHYK RTAKKSFSEVMTDYAAAHPNAPIVLVNYGPIGDILDCIPLSAKARCATVEHLTALNRTAREEFRDLVRKVIGWPVRAAPE IGGTTRAKSAVAVDVSRSMAPVLSDPRFSSALAAIAVAPHASEIFPIDRRVHTAISVEQAIERLRSIQGDINALEAPVTE LLGTYDEVIVLTDRDGLNDLSALRSASEEFAAGSFFRVTVSRPEST >Mature_605_residues SQSIQINRSAADAWSQLVKGGALDIDGRDKEFAGAICKMLDPTGTDLGDALAKATTDQLIQVFFRALQPFSEMYREILRF FTTAGAKYGRDQWRIGISEKHFELSDFEDFVRMWDGVPGEIDVPALGHEDFGIVWLAWEAYPQLGNVANKAAREPAELGI ADVDRWLVDYRSGQINPLPLSVLSEQQDAGFRELAALVATVHEGLVAFSQNRAVLRSQFDWRTLKGSDAFSVNQLAFLDT DNWLGTAVAGLALAKGIAPESRSRIARVLQNAFEGLPTRKLKARVSLNDLDRFLSLPVWQKRHEIYAVWVFTELAAAANE HDLEIYHDQGRIAFEFRESRLATVTSARPPIDMITERRSPIANPVGAGRTANVQPDFGLWARDPGAERCALVVEVKHYKR TAKKSFSEVMTDYAAAHPNAPIVLVNYGPIGDILDCIPLSAKARCATVEHLTALNRTAREEFRDLVRKVIGWPVRAAPEI GGTTRAKSAVAVDVSRSMAPVLSDPRFSSALAAIAVAPHASEIFPIDRRVHTAISVEQAIERLRSIQGDINALEAPVTEL LGTYDEVIVLTDRDGLNDLSALRSASEEFAAGSFFRVTVSRPEST
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4BO_RHISN (P55382)
Other databases:
- EMBL: U00090 - RefSeq: NP_443792.1 - GeneID: 962287 - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a00150 - ProtClustDB: CLSK808991
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 66763; Mature: 66632
Theoretical pI: Translated: 5.57; Mature: 5.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQSIQINRSAADAWSQLVKGGALDIDGRDKEFAGAICKMLDPTGTDLGDALAKATTDQL CCCCEEECCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH IQVFFRALQPFSEMYREILRFFTTAGAKYGRDQWRIGISEKHFELSDFEDFVRMWDGVPG HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCC EIDVPALGHEDFGIVWLAWEAYPQLGNVANKAAREPAELGIADVDRWLVDYRSGQINPLP CCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHCCHHHCCHHHHHHHHHHHCCCCCCCCC LSVLSEQQDAGFRELAALVATVHEGLVAFSQNRAVLRSQFDWRTLKGSDAFSVNQLAFLD HHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEECCCCCCCCCEEEEEE TDNWLGTAVAGLALAKGIAPESRSRIARVLQNAFEGLPTRKLKARVSLNDLDRFLSLPVW CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHEECCHHHHHHHHCCCCH QKRHEIYAVWVFTELAAAANEHDLEIYHDQGRIAFEFRESRLATVTSARPPIDMITERRS HCCCCEEEEEHHHHHHHHCCCCCEEEEECCCCEEEEEHHCHHHHHHCCCCCHHHHHCCCC PIANPVGAGRTANVQPDFGLWARDPGAERCALVVEVKHYKRTAKKSFSEVMTDYAAAHPN CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCC APIVLVNYGPIGDILDCIPLSAKARCATVEHLTALNRTAREEFRDLVRKVIGWPVRAAPE CCEEEEECCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC IGGTTRAKSAVAVDVSRSMAPVLSDPRFSSALAAIAVAPHASEIFPIDRRVHTAISVEQA CCCCCCCCCEEEEEHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH IERLRSIQGDINALEAPVTELLGTYDEVIVLTDRDGLNDLSALRSASEEFAAGSFFRVTV HHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE SRPEST CCCCCC >Mature Secondary Structure SQSIQINRSAADAWSQLVKGGALDIDGRDKEFAGAICKMLDPTGTDLGDALAKATTDQL CCCEEECCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH IQVFFRALQPFSEMYREILRFFTTAGAKYGRDQWRIGISEKHFELSDFEDFVRMWDGVPG HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCC EIDVPALGHEDFGIVWLAWEAYPQLGNVANKAAREPAELGIADVDRWLVDYRSGQINPLP CCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHCCHHHCCHHHHHHHHHHHCCCCCCCCC LSVLSEQQDAGFRELAALVATVHEGLVAFSQNRAVLRSQFDWRTLKGSDAFSVNQLAFLD HHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEECCCCCCCCCEEEEEE TDNWLGTAVAGLALAKGIAPESRSRIARVLQNAFEGLPTRKLKARVSLNDLDRFLSLPVW CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHEECCHHHHHHHHCCCCH QKRHEIYAVWVFTELAAAANEHDLEIYHDQGRIAFEFRESRLATVTSARPPIDMITERRS HCCCCEEEEEHHHHHHHHCCCCCEEEEECCCCEEEEEHHCHHHHHHCCCCCHHHHHCCCC PIANPVGAGRTANVQPDFGLWARDPGAERCALVVEVKHYKRTAKKSFSEVMTDYAAAHPN CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCC APIVLVNYGPIGDILDCIPLSAKARCATVEHLTALNRTAREEFRDLVRKVIGWPVRAAPE CCEEEEECCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC IGGTTRAKSAVAVDVSRSMAPVLSDPRFSSALAAIAVAPHASEIFPIDRRVHTAISVEQA CCCCCCCCCEEEEEHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH IERLRSIQGDINALEAPVTELLGTYDEVIVLTDRDGLNDLSALRSASEEFAAGSFFRVTV HHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE SRPEST CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424