Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
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Accession | NC_000914 |
Length | 536,165 |
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Identifier: 16519671
GI number: 16519671
Start: 20359
End: 21654
Strand: Reverse
Name: Not Available
Synonym: NGR_a00160
Alternate gene names: NA
Gene position: 21654-20359 (Counterclockwise)
Preceding gene: 16519948
Following gene: 16519672
Centisome position: 4.04
GC content: 59.49
Gene sequence:
>1296_bases GTGCCTTCACAAATGCGCGAAGCAATCACTCGGCTTAACGAAGAATTCGGTTGCAGGATTTTTGTCATCTCGCTCGGCGA CAAGAAGCGCGTTTTCGACGGTGGCAAGGTCGGGACTTGGGCCGCGACGCTCGACGAACTCGCGCGAGAGCGCAATGTTG TCATTATCGTGTCCGCTGGAAACCGCGGGCCACGCGCCGGTAGCCGCGTGGAGCAAGGCGTCACCGAGTATCCGGACTAC CTCCTCGAGGCAAATAATCGCCTGCTTGAGCCTGCCGGCGCCATGAATGTAATCACGGTCGGTTCGATTGCGCAGGGAGA CGGTCTCGACGCCGATATGGCGGGCGATGTGCGGGTCCGCCCGATAACCCGCGCGAACGAACCTTCTCCGTTTTCGCGCG TGGGGCCAGGTCTCGGTGGTGGCACCAAACCCGATCTTGTCGACGTTGGTGGCACGTTGATCTTCGACCCTGTCGTCGCC CGCCTTCGAGGCGGCGAGGATCGGCCGAGCGCTGGGGTTCTCACCCTCAACCACAACTATCTCAACCGTCTTTTCACGGC TGGGTCCGGCACATCCTACTCGGCGCCACGCGTCGGGTTCAGCGCCGGTCAAATTCTCGCTCGCTTTCCTGGCGCTTCAG CGAACTTGGTTCGTGCACTTTTGATCAATTCTGCAGAGGTCCCGCAGCAGGCAAGCGAGCGCCTTCAGATACTGGGAAGC GAGGCGGTGCGTTCGGTTTGCGGCCACGGTCTCATCGACCTTGAGCGCGCCGGTTTTTCTGATGATGCCCGTGTGACATT GTATACGGAAGACGAGCTTCCGCTCGATCATTTCGCTGTCTATCGCATCCCAATCCCTGAGGTCTTTCAGGAAGGAAACA CCGAGCGCACAATTCGCGTAACGCTCGCCTATGACCCTCCCGTCCGCCATACCCGGAACGACTATGCTGGCGTCGGGATG AGCTTTCGGCTGGTGCGCGGGTGCGAGCCTAATTTCATCTTCGAGCACTATCGCAAGAGAGCGGAGGTTGAAGGCCCCTT CCCCGAAATGGAGAACCGCTTTAACTGCAAACTCGAGCCTGGACCGAAGGTAAGAGAGAAGAGCTCAGTGCAACGCGCCA GCATCACGTTCAAGCGCGGAATCGAGCAATACGGCGACAGCTACTACCTCGTCGTGCGCTGCGAGAGTGGTTGGGCGACC CATGTGGATCGGCAACCGTTTGCGGTTGTCGTAGAGCTGCTTCAGAAGGCTGAAGTCCGGTTATACGAACGCCTGCGTCA GCGCGTTCGGGCATAA
Upstream 100 bases:
>100_bases TCTGCGGGCACAATTGGCGACTGGAGAACTACGTCGAGGTTCCAGGATCTGTGCGGCCAAGGTCACAAACGATACAGGCG GCTTTGACGACCGGCGCCTC
Downstream 100 bases:
>100_bases CAGAACATCTGAACCAGTAGACTCCTATGCGGCCCTCTCACCAGTCATGCCCAACGGAGTATGGAACGTCAAATGTCTCA ATCTATACAAATTAACCGCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 431; Mature: 430
Protein sequence:
>431_residues MPSQMREAITRLNEEFGCRIFVISLGDKKRVFDGGKVGTWAATLDELARERNVVIIVSAGNRGPRAGSRVEQGVTEYPDY LLEANNRLLEPAGAMNVITVGSIAQGDGLDADMAGDVRVRPITRANEPSPFSRVGPGLGGGTKPDLVDVGGTLIFDPVVA RLRGGEDRPSAGVLTLNHNYLNRLFTAGSGTSYSAPRVGFSAGQILARFPGASANLVRALLINSAEVPQQASERLQILGS EAVRSVCGHGLIDLERAGFSDDARVTLYTEDELPLDHFAVYRIPIPEVFQEGNTERTIRVTLAYDPPVRHTRNDYAGVGM SFRLVRGCEPNFIFEHYRKRAEVEGPFPEMENRFNCKLEPGPKVREKSSVQRASITFKRGIEQYGDSYYLVVRCESGWAT HVDRQPFAVVVELLQKAEVRLYERLRQRVRA
Sequences:
>Translated_431_residues MPSQMREAITRLNEEFGCRIFVISLGDKKRVFDGGKVGTWAATLDELARERNVVIIVSAGNRGPRAGSRVEQGVTEYPDY LLEANNRLLEPAGAMNVITVGSIAQGDGLDADMAGDVRVRPITRANEPSPFSRVGPGLGGGTKPDLVDVGGTLIFDPVVA RLRGGEDRPSAGVLTLNHNYLNRLFTAGSGTSYSAPRVGFSAGQILARFPGASANLVRALLINSAEVPQQASERLQILGS EAVRSVCGHGLIDLERAGFSDDARVTLYTEDELPLDHFAVYRIPIPEVFQEGNTERTIRVTLAYDPPVRHTRNDYAGVGM SFRLVRGCEPNFIFEHYRKRAEVEGPFPEMENRFNCKLEPGPKVREKSSVQRASITFKRGIEQYGDSYYLVVRCESGWAT HVDRQPFAVVVELLQKAEVRLYERLRQRVRA >Mature_430_residues PSQMREAITRLNEEFGCRIFVISLGDKKRVFDGGKVGTWAATLDELARERNVVIIVSAGNRGPRAGSRVEQGVTEYPDYL LEANNRLLEPAGAMNVITVGSIAQGDGLDADMAGDVRVRPITRANEPSPFSRVGPGLGGGTKPDLVDVGGTLIFDPVVAR LRGGEDRPSAGVLTLNHNYLNRLFTAGSGTSYSAPRVGFSAGQILARFPGASANLVRALLINSAEVPQQASERLQILGSE AVRSVCGHGLIDLERAGFSDDARVTLYTEDELPLDHFAVYRIPIPEVFQEGNTERTIRVTLAYDPPVRHTRNDYAGVGMS FRLVRGCEPNFIFEHYRKRAEVEGPFPEMENRFNCKLEPGPKVREKSSVQRASITFKRGIEQYGDSYYLVVRCESGWATH VDRQPFAVVVELLQKAEVRLYERLRQRVRA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4BN_RHISN (P55381)
Other databases:
- EMBL: U00090 - RefSeq: NP_443791.1 - ProteinModelPortal: P55381 - GeneID: 962592 - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a00160 - GO: GO:0006508 - InterPro: IPR000209 - InterPro: IPR015500 - Gene3D: G3DSA:3.40.50.200 - PANTHER: PTHR10795
Pfam domain/function: PF00082 Peptidase_S8; SSF52743 Pept_S8_S53
EC number: NA
Molecular weight: Translated: 47563; Mature: 47431
Theoretical pI: Translated: 7.89; Mature: 7.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSQMREAITRLNEEFGCRIFVISLGDKKRVFDGGKVGTWAATLDELARERNVVIIVSAG CCHHHHHHHHHHHHHCCCEEEEEEECCCCEECCCCCCCHHHHHHHHHHHCCCEEEEEECC NRGPRAGSRVEQGVTEYPDYLLEANNRLLEPAGAMNVITVGSIAQGDGLDADMAGDVRVR CCCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCCEEEEEECCCCCCCCCCCCCCCCEEEE PITRANEPSPFSRVGPGLGGGTKPDLVDVGGTLIFDPVVARLRGGEDRPSAGVLTLNHNY EECCCCCCCCHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCEEEECHHH LNRLFTAGSGTSYSAPRVGFSAGQILARFPGASANLVRALLINSAEVPQQASERLQILGS HHHHEECCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH EAVRSVCGHGLIDLERAGFSDDARVTLYTEDELPLDHFAVYRIPIPEVFQEGNTERTIRV HHHHHHHCCCCEEECCCCCCCCCEEEEEECCCCCCCCEEEEECCCHHHHHCCCCCEEEEE TLAYDPPVRHTRNDYAGVGMSFRLVRGCEPNFIFEHYRKRAEVEGPFPEMENRFNCKLEP EEEECCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEECC GPKVREKSSVQRASITFKRGIEQYGDSYYLVVRCESGWATHVDRQPFAVVVELLQKAEVR CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH LYERLRQRVRA HHHHHHHHHCC >Mature Secondary Structure PSQMREAITRLNEEFGCRIFVISLGDKKRVFDGGKVGTWAATLDELARERNVVIIVSAG CHHHHHHHHHHHHHCCCEEEEEEECCCCEECCCCCCCHHHHHHHHHHHCCCEEEEEECC NRGPRAGSRVEQGVTEYPDYLLEANNRLLEPAGAMNVITVGSIAQGDGLDADMAGDVRVR CCCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCCEEEEEECCCCCCCCCCCCCCCCEEEE PITRANEPSPFSRVGPGLGGGTKPDLVDVGGTLIFDPVVARLRGGEDRPSAGVLTLNHNY EECCCCCCCCHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCEEEECHHH LNRLFTAGSGTSYSAPRVGFSAGQILARFPGASANLVRALLINSAEVPQQASERLQILGS HHHHEECCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH EAVRSVCGHGLIDLERAGFSDDARVTLYTEDELPLDHFAVYRIPIPEVFQEGNTERTIRV HHHHHHHCCCCEEECCCCCCCCCEEEEEECCCCCCCCEEEEECCCHHHHHCCCCCEEEEE TLAYDPPVRHTRNDYAGVGMSFRLVRGCEPNFIFEHYRKRAEVEGPFPEMENRFNCKLEP EEEECCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEECC GPKVREKSSVQRASITFKRGIEQYGDSYYLVVRCESGWATHVDRQPFAVVVELLQKAEVR CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH LYERLRQRVRA HHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424