Definition Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence.
Accession NC_000914
Length 536,165

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Identifier: 16519671

GI number: 16519671

Start: 20359

End: 21654

Strand: Reverse

Name: Not Available

Synonym: NGR_a00160

Alternate gene names: NA

Gene position: 21654-20359 (Counterclockwise)

Preceding gene: 16519948

Following gene: 16519672

Centisome position: 4.04

GC content: 59.49

Gene sequence:

>1296_bases
GTGCCTTCACAAATGCGCGAAGCAATCACTCGGCTTAACGAAGAATTCGGTTGCAGGATTTTTGTCATCTCGCTCGGCGA
CAAGAAGCGCGTTTTCGACGGTGGCAAGGTCGGGACTTGGGCCGCGACGCTCGACGAACTCGCGCGAGAGCGCAATGTTG
TCATTATCGTGTCCGCTGGAAACCGCGGGCCACGCGCCGGTAGCCGCGTGGAGCAAGGCGTCACCGAGTATCCGGACTAC
CTCCTCGAGGCAAATAATCGCCTGCTTGAGCCTGCCGGCGCCATGAATGTAATCACGGTCGGTTCGATTGCGCAGGGAGA
CGGTCTCGACGCCGATATGGCGGGCGATGTGCGGGTCCGCCCGATAACCCGCGCGAACGAACCTTCTCCGTTTTCGCGCG
TGGGGCCAGGTCTCGGTGGTGGCACCAAACCCGATCTTGTCGACGTTGGTGGCACGTTGATCTTCGACCCTGTCGTCGCC
CGCCTTCGAGGCGGCGAGGATCGGCCGAGCGCTGGGGTTCTCACCCTCAACCACAACTATCTCAACCGTCTTTTCACGGC
TGGGTCCGGCACATCCTACTCGGCGCCACGCGTCGGGTTCAGCGCCGGTCAAATTCTCGCTCGCTTTCCTGGCGCTTCAG
CGAACTTGGTTCGTGCACTTTTGATCAATTCTGCAGAGGTCCCGCAGCAGGCAAGCGAGCGCCTTCAGATACTGGGAAGC
GAGGCGGTGCGTTCGGTTTGCGGCCACGGTCTCATCGACCTTGAGCGCGCCGGTTTTTCTGATGATGCCCGTGTGACATT
GTATACGGAAGACGAGCTTCCGCTCGATCATTTCGCTGTCTATCGCATCCCAATCCCTGAGGTCTTTCAGGAAGGAAACA
CCGAGCGCACAATTCGCGTAACGCTCGCCTATGACCCTCCCGTCCGCCATACCCGGAACGACTATGCTGGCGTCGGGATG
AGCTTTCGGCTGGTGCGCGGGTGCGAGCCTAATTTCATCTTCGAGCACTATCGCAAGAGAGCGGAGGTTGAAGGCCCCTT
CCCCGAAATGGAGAACCGCTTTAACTGCAAACTCGAGCCTGGACCGAAGGTAAGAGAGAAGAGCTCAGTGCAACGCGCCA
GCATCACGTTCAAGCGCGGAATCGAGCAATACGGCGACAGCTACTACCTCGTCGTGCGCTGCGAGAGTGGTTGGGCGACC
CATGTGGATCGGCAACCGTTTGCGGTTGTCGTAGAGCTGCTTCAGAAGGCTGAAGTCCGGTTATACGAACGCCTGCGTCA
GCGCGTTCGGGCATAA

Upstream 100 bases:

>100_bases
TCTGCGGGCACAATTGGCGACTGGAGAACTACGTCGAGGTTCCAGGATCTGTGCGGCCAAGGTCACAAACGATACAGGCG
GCTTTGACGACCGGCGCCTC

Downstream 100 bases:

>100_bases
CAGAACATCTGAACCAGTAGACTCCTATGCGGCCCTCTCACCAGTCATGCCCAACGGAGTATGGAACGTCAAATGTCTCA
ATCTATACAAATTAACCGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 431; Mature: 430

Protein sequence:

>431_residues
MPSQMREAITRLNEEFGCRIFVISLGDKKRVFDGGKVGTWAATLDELARERNVVIIVSAGNRGPRAGSRVEQGVTEYPDY
LLEANNRLLEPAGAMNVITVGSIAQGDGLDADMAGDVRVRPITRANEPSPFSRVGPGLGGGTKPDLVDVGGTLIFDPVVA
RLRGGEDRPSAGVLTLNHNYLNRLFTAGSGTSYSAPRVGFSAGQILARFPGASANLVRALLINSAEVPQQASERLQILGS
EAVRSVCGHGLIDLERAGFSDDARVTLYTEDELPLDHFAVYRIPIPEVFQEGNTERTIRVTLAYDPPVRHTRNDYAGVGM
SFRLVRGCEPNFIFEHYRKRAEVEGPFPEMENRFNCKLEPGPKVREKSSVQRASITFKRGIEQYGDSYYLVVRCESGWAT
HVDRQPFAVVVELLQKAEVRLYERLRQRVRA

Sequences:

>Translated_431_residues
MPSQMREAITRLNEEFGCRIFVISLGDKKRVFDGGKVGTWAATLDELARERNVVIIVSAGNRGPRAGSRVEQGVTEYPDY
LLEANNRLLEPAGAMNVITVGSIAQGDGLDADMAGDVRVRPITRANEPSPFSRVGPGLGGGTKPDLVDVGGTLIFDPVVA
RLRGGEDRPSAGVLTLNHNYLNRLFTAGSGTSYSAPRVGFSAGQILARFPGASANLVRALLINSAEVPQQASERLQILGS
EAVRSVCGHGLIDLERAGFSDDARVTLYTEDELPLDHFAVYRIPIPEVFQEGNTERTIRVTLAYDPPVRHTRNDYAGVGM
SFRLVRGCEPNFIFEHYRKRAEVEGPFPEMENRFNCKLEPGPKVREKSSVQRASITFKRGIEQYGDSYYLVVRCESGWAT
HVDRQPFAVVVELLQKAEVRLYERLRQRVRA
>Mature_430_residues
PSQMREAITRLNEEFGCRIFVISLGDKKRVFDGGKVGTWAATLDELARERNVVIIVSAGNRGPRAGSRVEQGVTEYPDYL
LEANNRLLEPAGAMNVITVGSIAQGDGLDADMAGDVRVRPITRANEPSPFSRVGPGLGGGTKPDLVDVGGTLIFDPVVAR
LRGGEDRPSAGVLTLNHNYLNRLFTAGSGTSYSAPRVGFSAGQILARFPGASANLVRALLINSAEVPQQASERLQILGSE
AVRSVCGHGLIDLERAGFSDDARVTLYTEDELPLDHFAVYRIPIPEVFQEGNTERTIRVTLAYDPPVRHTRNDYAGVGMS
FRLVRGCEPNFIFEHYRKRAEVEGPFPEMENRFNCKLEPGPKVREKSSVQRASITFKRGIEQYGDSYYLVVRCESGWATH
VDRQPFAVVVELLQKAEVRLYERLRQRVRA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4BN_RHISN (P55381)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443791.1
- ProteinModelPortal:   P55381
- GeneID:   962592
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a00160
- GO:   GO:0006508
- InterPro:   IPR000209
- InterPro:   IPR015500
- Gene3D:   G3DSA:3.40.50.200
- PANTHER:   PTHR10795

Pfam domain/function: PF00082 Peptidase_S8; SSF52743 Pept_S8_S53

EC number: NA

Molecular weight: Translated: 47563; Mature: 47431

Theoretical pI: Translated: 7.89; Mature: 7.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSQMREAITRLNEEFGCRIFVISLGDKKRVFDGGKVGTWAATLDELARERNVVIIVSAG
CCHHHHHHHHHHHHHCCCEEEEEEECCCCEECCCCCCCHHHHHHHHHHHCCCEEEEEECC
NRGPRAGSRVEQGVTEYPDYLLEANNRLLEPAGAMNVITVGSIAQGDGLDADMAGDVRVR
CCCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCCEEEEEECCCCCCCCCCCCCCCCEEEE
PITRANEPSPFSRVGPGLGGGTKPDLVDVGGTLIFDPVVARLRGGEDRPSAGVLTLNHNY
EECCCCCCCCHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCEEEECHHH
LNRLFTAGSGTSYSAPRVGFSAGQILARFPGASANLVRALLINSAEVPQQASERLQILGS
HHHHEECCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
EAVRSVCGHGLIDLERAGFSDDARVTLYTEDELPLDHFAVYRIPIPEVFQEGNTERTIRV
HHHHHHHCCCCEEECCCCCCCCCEEEEEECCCCCCCCEEEEECCCHHHHHCCCCCEEEEE
TLAYDPPVRHTRNDYAGVGMSFRLVRGCEPNFIFEHYRKRAEVEGPFPEMENRFNCKLEP
EEEECCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEECC
GPKVREKSSVQRASITFKRGIEQYGDSYYLVVRCESGWATHVDRQPFAVVVELLQKAEVR
CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
LYERLRQRVRA
HHHHHHHHHCC
>Mature Secondary Structure 
PSQMREAITRLNEEFGCRIFVISLGDKKRVFDGGKVGTWAATLDELARERNVVIIVSAG
CHHHHHHHHHHHHHCCCEEEEEEECCCCEECCCCCCCHHHHHHHHHHHCCCEEEEEECC
NRGPRAGSRVEQGVTEYPDYLLEANNRLLEPAGAMNVITVGSIAQGDGLDADMAGDVRVR
CCCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCCEEEEEECCCCCCCCCCCCCCCCEEEE
PITRANEPSPFSRVGPGLGGGTKPDLVDVGGTLIFDPVVARLRGGEDRPSAGVLTLNHNY
EECCCCCCCCHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCEEEECHHH
LNRLFTAGSGTSYSAPRVGFSAGQILARFPGASANLVRALLINSAEVPQQASERLQILGS
HHHHEECCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
EAVRSVCGHGLIDLERAGFSDDARVTLYTEDELPLDHFAVYRIPIPEVFQEGNTERTIRV
HHHHHHHCCCCEEECCCCCCCCCEEEEEECCCCCCCCEEEEECCCHHHHHCCCCCEEEEE
TLAYDPPVRHTRNDYAGVGMSFRLVRGCEPNFIFEHYRKRAEVEGPFPEMENRFNCKLEP
EEEECCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEECC
GPKVREKSSVQRASITFKRGIEQYGDSYYLVVRCESGWATHVDRQPFAVVVELLQKAEVR
CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
LYERLRQRVRA
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424