Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080843

Identifier: 99080843

GI number: 99080843

Start: 1073472

End: 1073627

Strand: Direct

Name: 99080843

Synonym: TM1040_1002

Alternate gene names: NA

Gene position: 1073472-1073627 (Clockwise)

Preceding gene: 99080842

Following gene: 99080844

Centisome position: 33.54

GC content: 58.33

Gene sequence:

>156_bases
ATGCCTGATTTGGGAAAATACGCAGAAACGGTTCTTTCGGCCTATGCTGTCTCGCTGGTGTTGCTGGTCGCGCTCCTGGT
CGTGACCTTCCTGCGCGGGGCCAAGGTGCGCGCTGCGCTCAAAGACGTTGAGGAAAGGGTGCGCCGAAATGGCTAA

Upstream 100 bases:

>100_bases
GGGTTCGGGGCGCTGTTTATCGCGCTGGTGCTCTATCGCACCGGTACCGAGATCCGCGCGCGCCGGATGTCGGCGCTGAT
CGCACGCGAAAGGATGATGG

Downstream 100 bases:

>100_bases
GATCTCTTTGATGATGGCTATTCCAGTGGTCGTCTTTTCCGGCTTTGTTGGCCTTGCCCTCGTGGGCATGGGCCGCGACG
ATCCCGAAAGCCTGCCCTCG

Product: Heme exporter protein D (CcmD)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 51; Mature: 50

Protein sequence:

>51_residues
MPDLGKYAETVLSAYAVSLVLLVALLVVTFLRGAKVRAALKDVEERVRRNG

Sequences:

>Translated_51_residues
MPDLGKYAETVLSAYAVSLVLLVALLVVTFLRGAKVRAALKDVEERVRRNG
>Mature_50_residues
PDLGKYAETVLSAYAVSLVLLVALLVVTFLRGAKVRAALKDVEERVRRNG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 5573; Mature: 5442

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDLGKYAETVLSAYAVSLVLLVALLVVTFLRGAKVRAALKDVEERVRRNG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PDLGKYAETVLSAYAVSLVLLVALLVVTFLRGAKVRAALKDVEERVRRNG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA