| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080712
Identifier: 99080712
GI number: 99080712
Start: 928914
End: 929723
Strand: Direct
Name: 99080712
Synonym: TM1040_0871
Alternate gene names: NA
Gene position: 928914-929723 (Clockwise)
Preceding gene: 99080711
Following gene: 99080714
Centisome position: 29.02
GC content: 59.26
Gene sequence:
>810_bases ATGACGCAAACCACAGAAACACCGACCGCGCCTCTTACGCGACCGCTTGGGGTGCCGGACCTCAGACCCGTGAGCGCTGG CACCCTCAGAGACGCGCTCAGGGCAGGCTGGCGGGACTTTTGCGCCAAACCCATCTATGGGCTCATCTTTGCGGGGTTTT ATGTGCTCGCAGGCTGGGTCATGGCCTGGGTGACGCTGCAAACGCAGACAAGTTACTGGCTGGTTCTCGCGGCCATCGGC TTTCCGCTGATTGGTCCTTTTGCAGCGGTTGGGCTTTATGAGGTCTCGCATCGGATCGAAGCAGGGCGCAGACTGGACGC CGGGCGGATCTTTGGCGTGATCTTCGAGCAAAGCCGCCGCCAGCTGCCGTCGATCTGCGCCATCATCATCGTTGTATTTC TGTTCTGGTTCTTCCTCGGGCATATGATTTTTGCGCTGTTTCTGGGCCACATGCCGATGGTCAATGTCTCCACCTCGACC GAAGTCTTCCTCACCCCGCAGGGGCTCATGATGCTCGGGGTCGGAACCGTTGTCGGTGCGCTCTTTGCACTCCTGATTTA TATGATCACCGTACTCGGGCTGCCGCTTCTGCTGGACCGTGAGATCGACTTTGTCACCGCGATGATCACCAGTTTTACCT ATGTGCAGGCGAACCTCCTATGGATGCTTGCCTGGGCCGTGCTGATCGCCACGCTCACCTTTGTCGCGCTTTTGCCGGGG TTTTTCGGGCTCTTGGTGGTGCTGCCCTGGCTGGGGCATTCGAGTTGGCACCTTTACCGGCTCCTGCGCGTAGAGGAGGA CCCTACCTGA
Upstream 100 bases:
>100_bases CCTCGGGCTTGGGCAGGGATATCACACCGCGCGCGCCGCGCTCTAGCTCCGGCACCCGATCAGATCGCATGTGCATTGCA TAGGGAGGCTCTGCAAGACG
Downstream 100 bases:
>100_bases AGGGTTTGCCGAGCTGCAGAAGCCGCCGGTGAAAGGGGATGATCTCGGGTGCGGTGGTGAAACCGCAGCCTCTTGCGGCC TTGATCGCCGCGCTTACATC
Product: hypothetical protein
Products: NA
Alternate protein names: Integral Membrane Protein; Integral Membrane-Like Protein; Transmembrane Protein; Conserved Integral Membrane Protein; Integral Membrane Protein-Like Protein; Integral Membrane Protein-Like
Number of amino acids: Translated: 269; Mature: 268
Protein sequence:
>269_residues MTQTTETPTAPLTRPLGVPDLRPVSAGTLRDALRAGWRDFCAKPIYGLIFAGFYVLAGWVMAWVTLQTQTSYWLVLAAIG FPLIGPFAAVGLYEVSHRIEAGRRLDAGRIFGVIFEQSRRQLPSICAIIIVVFLFWFFLGHMIFALFLGHMPMVNVSTST EVFLTPQGLMMLGVGTVVGALFALLIYMITVLGLPLLLDREIDFVTAMITSFTYVQANLLWMLAWAVLIATLTFVALLPG FFGLLVVLPWLGHSSWHLYRLLRVEEDPT
Sequences:
>Translated_269_residues MTQTTETPTAPLTRPLGVPDLRPVSAGTLRDALRAGWRDFCAKPIYGLIFAGFYVLAGWVMAWVTLQTQTSYWLVLAAIG FPLIGPFAAVGLYEVSHRIEAGRRLDAGRIFGVIFEQSRRQLPSICAIIIVVFLFWFFLGHMIFALFLGHMPMVNVSTST EVFLTPQGLMMLGVGTVVGALFALLIYMITVLGLPLLLDREIDFVTAMITSFTYVQANLLWMLAWAVLIATLTFVALLPG FFGLLVVLPWLGHSSWHLYRLLRVEEDPT >Mature_268_residues TQTTETPTAPLTRPLGVPDLRPVSAGTLRDALRAGWRDFCAKPIYGLIFAGFYVLAGWVMAWVTLQTQTSYWLVLAAIGF PLIGPFAAVGLYEVSHRIEAGRRLDAGRIFGVIFEQSRRQLPSICAIIIVVFLFWFFLGHMIFALFLGHMPMVNVSTSTE VFLTPQGLMMLGVGTVVGALFALLIYMITVLGLPLLLDREIDFVTAMITSFTYVQANLLWMLAWAVLIATLTFVALLPGF FGLLVVLPWLGHSSWHLYRLLRVEEDPT
Specific function: Unknown
COG id: COG5473
COG function: function code S; Predicted integral membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29942; Mature: 29811
Theoretical pI: Translated: 7.63; Mature: 7.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQTTETPTAPLTRPLGVPDLRPVSAGTLRDALRAGWRDFCAKPIYGLIFAGFYVLAGWV CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MAWVTLQTQTSYWLVLAAIGFPLIGPFAAVGLYEVSHRIEAGRRLDAGRIFGVIFEQSRR HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH QLPSICAIIIVVFLFWFFLGHMIFALFLGHMPMVNVSTSTEVFLTPQGLMMLGVGTVVGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEECCCCHHHHHHHHHHHH LFALLIYMITVLGLPLLLDREIDFVTAMITSFTYVQANLLWMLAWAVLIATLTFVALLPG HHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FFGLLVVLPWLGHSSWHLYRLLRVEEDPT HHHHHHHHHHCCCCHHHHHHHHHHCCCCC >Mature Secondary Structure TQTTETPTAPLTRPLGVPDLRPVSAGTLRDALRAGWRDFCAKPIYGLIFAGFYVLAGWV CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MAWVTLQTQTSYWLVLAAIGFPLIGPFAAVGLYEVSHRIEAGRRLDAGRIFGVIFEQSRR HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH QLPSICAIIIVVFLFWFFLGHMIFALFLGHMPMVNVSTSTEVFLTPQGLMMLGVGTVVGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEECCCCHHHHHHHHHHHH LFALLIYMITVLGLPLLLDREIDFVTAMITSFTYVQANLLWMLAWAVLIATLTFVALLPG HHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FFGLLVVLPWLGHSSWHLYRLLRVEEDPT HHHHHHHHHHCCCCHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA