| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080714
Identifier: 99080714
GI number: 99080714
Start: 930711
End: 931130
Strand: Direct
Name: 99080714
Synonym: TM1040_0873
Alternate gene names: NA
Gene position: 930711-931130 (Clockwise)
Preceding gene: 99080712
Following gene: 99080719
Centisome position: 29.08
GC content: 59.52
Gene sequence:
>420_bases ATGATCGGTGTTGTCGTCTGGGCCGATACCGCAAAGTTAAAAGCGGTAATCTGGTGCGAAGATCAAAGAGATTTGGCCTA TTTTATTCAGCGCGAGGAGCACGCGCAGACGGTCGCGCTCAACAAGGGCGACCTGGTAAAGTTTGAGAGCCGCTATGAAA GCGGACTGCGGATGGCAGGCCGGGTGCAGGTGGTCGAACCCTGCGCGGAGCCACATCTGTCGGATGCGTTGCTGGATCAG CCAGCCCCGACTCCAGAGACCGTCACAGAGAGCGAGATCTGCGAAAACGCTCATCAGGGCGCAGAAGTCGCCTGTCTCTC GATCCCCGACCGCATTAAATCGCGCAGCGACGGCCACCGCCCGTCAGCAGAGCGCAAAAGCGCCAAGATCCTGGCCTTCC CGGAACGTTTGCGGGCCTGA
Upstream 100 bases:
>100_bases CAACGCCGACACAAATTGCAATTCCCTATTCCTAACTTTGGGATGTTTGAGAATCCGGTTTTGACGCAGAATAGAGACGG GCAAAAAAACGGGGTCCGCA
Downstream 100 bases:
>100_bases GGCATGTAGTGGCACCCGGGTGCCCGAAACATGTTTCAGCGTGCCCTAGATCAAAGCCTCAGCAGTCAAATACGCCCGAG CAAAAAGGGGCCGCCCAGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 139; Mature: 139
Protein sequence:
>139_residues MIGVVVWADTAKLKAVIWCEDQRDLAYFIQREEHAQTVALNKGDLVKFESRYESGLRMAGRVQVVEPCAEPHLSDALLDQ PAPTPETVTESEICENAHQGAEVACLSIPDRIKSRSDGHRPSAERKSAKILAFPERLRA
Sequences:
>Translated_139_residues MIGVVVWADTAKLKAVIWCEDQRDLAYFIQREEHAQTVALNKGDLVKFESRYESGLRMAGRVQVVEPCAEPHLSDALLDQ PAPTPETVTESEICENAHQGAEVACLSIPDRIKSRSDGHRPSAERKSAKILAFPERLRA >Mature_139_residues MIGVVVWADTAKLKAVIWCEDQRDLAYFIQREEHAQTVALNKGDLVKFESRYESGLRMAGRVQVVEPCAEPHLSDALLDQ PAPTPETVTESEICENAHQGAEVACLSIPDRIKSRSDGHRPSAERKSAKILAFPERLRA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15467; Mature: 15467
Theoretical pI: Translated: 5.67; Mature: 5.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIGVVVWADTAKLKAVIWCEDQRDLAYFIQREEHAQTVALNKGDLVKFESRYESGLRMAG CEEEEEEECCCCEEEEEEECCCCCHHHHHHHHCCCEEEEECCCCEEEEHHHHHCCCCCCC RVQVVEPCAEPHLSDALLDQPAPTPETVTESEICENAHQGAEVACLSIPDRIKSRSDGHR CEEEECCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCHHHHCCCCCCC PSAERKSAKILAFPERLRA CCCCCCCCEEEECHHHHCC >Mature Secondary Structure MIGVVVWADTAKLKAVIWCEDQRDLAYFIQREEHAQTVALNKGDLVKFESRYESGLRMAG CEEEEEEECCCCEEEEEEECCCCCHHHHHHHHCCCEEEEECCCCEEEEHHHHHCCCCCCC RVQVVEPCAEPHLSDALLDQPAPTPETVTESEICENAHQGAEVACLSIPDRIKSRSDGHR CEEEECCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCHHHHCCCCCCC PSAERKSAKILAFPERLRA CCCCCCCCEEEECHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA