Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is cobS [H]
Identifier: 87200904
GI number: 87200904
Start: 3110927
End: 3111907
Strand: Direct
Name: cobS [H]
Synonym: Saro_2891
Alternate gene names: 87200904
Gene position: 3110927-3111907 (Clockwise)
Preceding gene: 87200895
Following gene: 87200908
Centisome position: 87.35
GC content: 63.91
Gene sequence:
>981_bases ATGAGCGAACTTCCGAACAGCCACGCGACGACGCTGCTCGCCGCGCCCGACACCGAAATCGATGTCCGCGAAACCTTCGG CATCGACATCGACATGAAGGTTCCCGCCTTTTCGCGGGCGGACGAGCGCGTGCCCGACCGCGACGACACCTACGTGTTCG ATCCGGACACGACTCTCGCGATCCTTGCGGGCTTTGCCTACAATCGGCGCGTGATGGTCCAGGGCTATCACGGCACGGGC AAGTCGACGCACATCGAACAGGTTGCGGCGCGCCTCAACTGGCCCTGCATCCGCATCAACCTCGACGCGCACATCAGCCG CATCGACCTTGTCGGTCGTGACGCGATCGTGCTGCGCGACGGGCTGCAGGTGACCGAGTTCCGCGAAGGCCTGCTGCCGT GGGCATTGCAGACCCCGACCGCGCTGGTCTTCGACGAATACGATGCGGGCCGTCCCGACGTGATGTTCGTGATCCAGCGC GTGCTGGAAACCGAGGGCAAGCTGACCCTGCTCGACCAGAACCGCGTGATCCGCCCGAACAAGTTCTTCCGCCTCTTCGC GACGGCCAACACGGTGGGCCTTGGCGACACCTCGGGCCTCTATCACGGCACCCAGGCGATCAACCAGGGCCAGATGGACC GCTGGAACCTCGTCGTGGCACTGAACTACCTGCCCGAGGCGACCGAGGTGGAGATCGTCACCAAGAAGGTGCCCGATCTC GACCCGAAGATCGTGACCGACATGGTGCGCGTGGCGAACCTGACGCGTCAGGGCTTCATCAATGGCGACATTTCGACCGT GATGAGCCCGCGCACGGTGATCAGCTGGGCGCAGAACAGCCAGATCTTCAACGACGTCGGCTTCGCCTTCCGCCTGTCGT TCCTCAACAAGTGCGACGAGACGGAACGCGTGCTCGTGGCCGAATACTACCAGCGCGTGTTCGGCAAGGATCTGCCGGAA AGCGTCGCGCACCGGGGTTGA
Upstream 100 bases:
>100_bases CAGCGCACCGTAGAGCTTCATCGAAATTCTCCCATTCTATCGGACAGGTCTTCTGAAACCTTATTGCAGCGCCGCGCCCG CCCGTATAGGCGGGGCAGCG
Downstream 100 bases:
>100_bases GACCGCCGGCGCTGAAATGGAAAAAGGCCCCTGCGAGAGCGGGGGCCTTTCTTCGTCGGCTCAGCCGTTGGGCGTGATCA GGTACTTCTCGCCGGTGCGC
Product: hydrogenobyrinic acid a,c-diamide cobaltochelatase
Products: NA
Alternate protein names: Hydrogenobyrinic acid a,c-diamide cobaltochelatase subunit CobS [H]
Number of amino acids: Translated: 326; Mature: 325
Protein sequence:
>326_residues MSELPNSHATTLLAAPDTEIDVRETFGIDIDMKVPAFSRADERVPDRDDTYVFDPDTTLAILAGFAYNRRVMVQGYHGTG KSTHIEQVAARLNWPCIRINLDAHISRIDLVGRDAIVLRDGLQVTEFREGLLPWALQTPTALVFDEYDAGRPDVMFVIQR VLETEGKLTLLDQNRVIRPNKFFRLFATANTVGLGDTSGLYHGTQAINQGQMDRWNLVVALNYLPEATEVEIVTKKVPDL DPKIVTDMVRVANLTRQGFINGDISTVMSPRTVISWAQNSQIFNDVGFAFRLSFLNKCDETERVLVAEYYQRVFGKDLPE SVAHRG
Sequences:
>Translated_326_residues MSELPNSHATTLLAAPDTEIDVRETFGIDIDMKVPAFSRADERVPDRDDTYVFDPDTTLAILAGFAYNRRVMVQGYHGTG KSTHIEQVAARLNWPCIRINLDAHISRIDLVGRDAIVLRDGLQVTEFREGLLPWALQTPTALVFDEYDAGRPDVMFVIQR VLETEGKLTLLDQNRVIRPNKFFRLFATANTVGLGDTSGLYHGTQAINQGQMDRWNLVVALNYLPEATEVEIVTKKVPDL DPKIVTDMVRVANLTRQGFINGDISTVMSPRTVISWAQNSQIFNDVGFAFRLSFLNKCDETERVLVAEYYQRVFGKDLPE SVAHRG >Mature_325_residues SELPNSHATTLLAAPDTEIDVRETFGIDIDMKVPAFSRADERVPDRDDTYVFDPDTTLAILAGFAYNRRVMVQGYHGTGK STHIEQVAARLNWPCIRINLDAHISRIDLVGRDAIVLRDGLQVTEFREGLLPWALQTPTALVFDEYDAGRPDVMFVIQRV LETEGKLTLLDQNRVIRPNKFFRLFATANTVGLGDTSGLYHGTQAINQGQMDRWNLVVALNYLPEATEVEIVTKKVPDLD PKIVTDMVRVANLTRQGFINGDISTVMSPRTVISWAQNSQIFNDVGFAFRLSFLNKCDETERVLVAEYYQRVFGKDLPES VAHRG
Specific function: Catalyzes cobalt insertion in the corrin ring [H]
COG id: COG0714
COG function: function code R; MoxR-like ATPases
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI24415404, Length=247, Percent_Identity=23.4817813765182, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011704 - InterPro: IPR006537 [H]
Pfam domain/function: PF07728 AAA_5 [H]
EC number: =6.6.1.2 [H]
Molecular weight: Translated: 36674; Mature: 36543
Theoretical pI: Translated: 4.97; Mature: 4.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSELPNSHATTLLAAPDTEIDVRETFGIDIDMKVPAFSRADERVPDRDDTYVFDPDTTLA CCCCCCCCCEEEEECCCCCEEEHHHCCCEEEEECCCCCCCCCCCCCCCCCEEECCCCHHH ILAGFAYNRRVMVQGYHGTGKSTHIEQVAARLNWPCIRINLDAHISRIDLVGRDAIVLRD HHHHHHCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCEEEEEECCCCEEEEEC GLQVTEFREGLLPWALQTPTALVFDEYDAGRPDVMFVIQRVLETEGKLTLLDQNRVIRPN CCCHHHHHHCCCCEECCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCEECCC KFFRLFATANTVGLGDTSGLYHGTQAINQGQMDRWNLVVALNYLPEATEVEIVTKKVPDL CEEEEEEECCCCCCCCCCCCCCCHHHHCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCC DPKIVTDMVRVANLTRQGFINGDISTVMSPRTVISWAQNSQIFNDVGFAFRLSFLNKCDE CHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHEEHHCCCHHHHHHHHHHHHHHHHHCCH TERVLVAEYYQRVFGKDLPESVAHRG HHHHHHHHHHHHHHCCCCCHHHHCCC >Mature Secondary Structure SELPNSHATTLLAAPDTEIDVRETFGIDIDMKVPAFSRADERVPDRDDTYVFDPDTTLA CCCCCCCCEEEEECCCCCEEEHHHCCCEEEEECCCCCCCCCCCCCCCCCEEECCCCHHH ILAGFAYNRRVMVQGYHGTGKSTHIEQVAARLNWPCIRINLDAHISRIDLVGRDAIVLRD HHHHHHCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCEEEEEECCCCEEEEEC GLQVTEFREGLLPWALQTPTALVFDEYDAGRPDVMFVIQRVLETEGKLTLLDQNRVIRPN CCCHHHHHHCCCCEECCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCEECCC KFFRLFATANTVGLGDTSGLYHGTQAINQGQMDRWNLVVALNYLPEATEVEIVTKKVPDL CEEEEEEECCCCCCCCCCCCCCCHHHHCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCC DPKIVTDMVRVANLTRQGFINGDISTVMSPRTVISWAQNSQIFNDVGFAFRLSFLNKCDE CHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHEEHHCCCHHHHHHHHHHHHHHHHHCCH TERVLVAEYYQRVFGKDLPESVAHRG HHHHHHHHHHHHHHCCCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1917840 [H]