Definition Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome.
Accession NC_007794
Length 3,561,584

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The map label for this gene is ykvO [H]

Identifier: 87200895

GI number: 87200895

Start: 3104889

End: 3105629

Strand: Direct

Name: ykvO [H]

Synonym: Saro_2882

Alternate gene names: 87200895

Gene position: 3104889-3105629 (Clockwise)

Preceding gene: 87200894

Following gene: 87200904

Centisome position: 87.18

GC content: 66.13

Gene sequence:

>741_bases
ATGCGATTTCGCGACAGGTGCGTGGCGATCCTCGGCGGGAATGCGGGGATCGGCCTGGCGGCGGCGCGCCTGTTCGCCGC
CGAGGGTGCGAAACTGGCAATAACCGGTCGGAATGCCGAGACATTGCGGGCGGTCGCAGAGGAGCTGGACGCCCTTTGCA
TCCGTTCCGACATGGGTGACCTGAACGACACCGAACGTGCCCTTGAAGAGATCGAGGACGCTCTGGGCGGCATCGACGTG
CTGTTCGTGAACGCCGGCGTCGGGGGGTTCGCGATGGTCCCGGACGTCACGCCCGAATTCTGGGACCAGATCCACTCGGT
CAACCTGCGCGGGGCCTTCTTTGCGATCCAGCGGGCCCTGCCGCTGATGCGCGACGGAGGCTCAATCGTCATAACCGGGT
CCATCGGATCGATGGCCGCTGTGCCGGGCAACGTCGCCTATGCGGCGGCCAAGGCGGGGCTGCGGGCCATGGCAAGGATC
GTCGGCAAGGAACTCCTGCCGCGCCGCATCCGCGTCAACATGGTGAGCCCAGGCCCGACCGACACGGAAATCTTCAAGCG
CGATGCGAGCGCCGAGGAAATCCAGGGCATGAAGGACATGCTGTCCTCGGTGGTGCCGATCGGGCGGATGGGGACTTCGG
AGGAAGTGGCCCGCGCCGTGCTGTTCCTGGCCAGCGCGGAAGCGAGCTTCATCAACGGCGTCGACCTGTGCGTCGATGGC
GGATGTATCGAGCTGGGCTGA

Upstream 100 bases:

>100_bases
ATCTTCCGCGTCGAGGGCTGCCGGGTGATGGAGCACTGGGACGTGCTGTCGCCGGTGCCCGAAGCCTCCGCCAATTCCAA
CACGATGTTCTGAGGACGCC

Downstream 100 bases:

>100_bases
CCGGCCCGGCAAGATCAGTCGGGGCTGCCGCCCTTGGCCGCCCCGACCAGCGTGCTGCCCTGCTTGTCCGGCAAGGTCCA
GATCACGACATTGACGAGCA

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MRFRDRCVAILGGNAGIGLAAARLFAAEGAKLAITGRNAETLRAVAEELDALCIRSDMGDLNDTERALEEIEDALGGIDV
LFVNAGVGGFAMVPDVTPEFWDQIHSVNLRGAFFAIQRALPLMRDGGSIVITGSIGSMAAVPGNVAYAAAKAGLRAMARI
VGKELLPRRIRVNMVSPGPTDTEIFKRDASAEEIQGMKDMLSSVVPIGRMGTSEEVARAVLFLASAEASFINGVDLCVDG
GCIELG

Sequences:

>Translated_246_residues
MRFRDRCVAILGGNAGIGLAAARLFAAEGAKLAITGRNAETLRAVAEELDALCIRSDMGDLNDTERALEEIEDALGGIDV
LFVNAGVGGFAMVPDVTPEFWDQIHSVNLRGAFFAIQRALPLMRDGGSIVITGSIGSMAAVPGNVAYAAAKAGLRAMARI
VGKELLPRRIRVNMVSPGPTDTEIFKRDASAEEIQGMKDMLSSVVPIGRMGTSEEVARAVLFLASAEASFINGVDLCVDG
GCIELG
>Mature_246_residues
MRFRDRCVAILGGNAGIGLAAARLFAAEGAKLAITGRNAETLRAVAEELDALCIRSDMGDLNDTERALEEIEDALGGIDV
LFVNAGVGGFAMVPDVTPEFWDQIHSVNLRGAFFAIQRALPLMRDGGSIVITGSIGSMAAVPGNVAYAAAKAGLRAMARI
VGKELLPRRIRVNMVSPGPTDTEIFKRDASAEEIQGMKDMLSSVVPIGRMGTSEEVARAVLFLASAEASFINGVDLCVDG
GCIELG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40254992, Length=243, Percent_Identity=37.037037037037, Blast_Score=129, Evalue=2e-30,
Organism=Homo sapiens, GI32483357, Length=249, Percent_Identity=34.136546184739, Blast_Score=112, Evalue=2e-25,
Organism=Homo sapiens, GI5031737, Length=244, Percent_Identity=30.7377049180328, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI7705925, Length=242, Percent_Identity=31.404958677686, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI59889578, Length=237, Percent_Identity=32.0675105485232, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI33667109, Length=189, Percent_Identity=30.6878306878307, Blast_Score=84, Evalue=9e-17,
Organism=Homo sapiens, GI10190704, Length=256, Percent_Identity=30.859375, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI19923817, Length=243, Percent_Identity=25.9259259259259, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI66933014, Length=223, Percent_Identity=28.2511210762332, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI15277342, Length=260, Percent_Identity=27.6923076923077, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI4503301, Length=231, Percent_Identity=29.004329004329, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI126723750, Length=240, Percent_Identity=30.8333333333333, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI126723191, Length=166, Percent_Identity=34.3373493975904, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI20149619, Length=195, Percent_Identity=29.7435897435897, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI209862901, Length=205, Percent_Identity=32.6829268292683, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI19923983, Length=205, Percent_Identity=32.6829268292683, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI4503817, Length=226, Percent_Identity=23.4513274336283, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI4504505, Length=193, Percent_Identity=30.5699481865285, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI302344755, Length=101, Percent_Identity=38.6138613861386, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI7706318, Length=200, Percent_Identity=26.5, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI109715829, Length=246, Percent_Identity=24.390243902439, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI2367365, Length=241, Percent_Identity=36.0995850622407, Blast_Score=127, Evalue=5e-31,
Organism=Escherichia coli, GI1789378, Length=248, Percent_Identity=31.4516129032258, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787335, Length=246, Percent_Identity=34.5528455284553, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1786812, Length=256, Percent_Identity=32.8125, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1788459, Length=241, Percent_Identity=32.3651452282158, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI87082100, Length=251, Percent_Identity=29.4820717131474, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1790717, Length=245, Percent_Identity=28.9795918367347, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787905, Length=257, Percent_Identity=30.3501945525292, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI2367175, Length=247, Percent_Identity=31.1740890688259, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87082160, Length=252, Percent_Identity=26.984126984127, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1789208, Length=198, Percent_Identity=26.2626262626263, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787526, Length=207, Percent_Identity=28.9855072463768, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786701, Length=189, Percent_Identity=29.6296296296296, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787820, Length=237, Percent_Identity=28.6919831223629, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17560332, Length=265, Percent_Identity=32.8301886792453, Blast_Score=110, Evalue=7e-25,
Organism=Caenorhabditis elegans, GI17562910, Length=262, Percent_Identity=32.4427480916031, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI71994600, Length=247, Percent_Identity=32.3886639676113, Blast_Score=103, Evalue=9e-23,
Organism=Caenorhabditis elegans, GI71994604, Length=247, Percent_Identity=32.3886639676113, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17544670, Length=269, Percent_Identity=30.1115241635688, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17559104, Length=265, Percent_Identity=32.0754716981132, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17531453, Length=262, Percent_Identity=30.9160305343511, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI72000259, Length=262, Percent_Identity=30.5343511450382, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17538486, Length=264, Percent_Identity=31.8181818181818, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17560676, Length=245, Percent_Identity=28.9795918367347, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17563726, Length=262, Percent_Identity=32.4427480916031, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17562908, Length=262, Percent_Identity=30.5343511450382, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17562906, Length=266, Percent_Identity=31.5789473684211, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=28.8973384030418, Blast_Score=94, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI17562904, Length=268, Percent_Identity=32.4626865671642, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17536025, Length=249, Percent_Identity=29.3172690763052, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17551412, Length=269, Percent_Identity=29.368029739777, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI193204405, Length=260, Percent_Identity=30.3846153846154, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17561402, Length=252, Percent_Identity=25.7936507936508, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI25147288, Length=248, Percent_Identity=30.6451612903226, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17560150, Length=260, Percent_Identity=29.6153846153846, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17538480, Length=265, Percent_Identity=29.4339622641509, Blast_Score=90, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI17555706, Length=243, Percent_Identity=32.0987654320988, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17536651, Length=249, Percent_Identity=28.1124497991968, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17561272, Length=233, Percent_Identity=28.3261802575107, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI115534694, Length=244, Percent_Identity=30.7377049180328, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17560220, Length=267, Percent_Identity=30.7116104868914, Blast_Score=87, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI17565030, Length=271, Percent_Identity=31.3653136531365, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71997099, Length=214, Percent_Identity=30.3738317757009, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17508651, Length=250, Percent_Identity=26, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17567345, Length=170, Percent_Identity=28.8235294117647, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71982365, Length=192, Percent_Identity=27.0833333333333, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17564282, Length=193, Percent_Identity=26.9430051813472, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=257, Percent_Identity=29.1828793774319, Blast_Score=89, Evalue=9e-19,
Organism=Saccharomyces cerevisiae, GI6322861, Length=191, Percent_Identity=27.7486910994764, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24644339, Length=249, Percent_Identity=36.5461847389558, Blast_Score=137, Evalue=7e-33,
Organism=Drosophila melanogaster, GI23397609, Length=248, Percent_Identity=34.6774193548387, Blast_Score=128, Evalue=4e-30,
Organism=Drosophila melanogaster, GI21357041, Length=248, Percent_Identity=33.4677419354839, Blast_Score=122, Evalue=2e-28,
Organism=Drosophila melanogaster, GI28571526, Length=247, Percent_Identity=33.6032388663968, Blast_Score=120, Evalue=8e-28,
Organism=Drosophila melanogaster, GI21355319, Length=251, Percent_Identity=30.2788844621514, Blast_Score=107, Evalue=8e-24,
Organism=Drosophila melanogaster, GI24643142, Length=236, Percent_Identity=31.3559322033898, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24639444, Length=240, Percent_Identity=29.1666666666667, Blast_Score=91, Evalue=6e-19,
Organism=Drosophila melanogaster, GI21356301, Length=199, Percent_Identity=28.643216080402, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24641232, Length=240, Percent_Identity=30.4166666666667, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24644337, Length=253, Percent_Identity=32.4110671936759, Blast_Score=78, Evalue=7e-15,
Organism=Drosophila melanogaster, GI116007234, Length=202, Percent_Identity=30.6930693069307, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI28571387, Length=208, Percent_Identity=27.8846153846154, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24580925, Length=203, Percent_Identity=29.5566502463054, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI18859837, Length=193, Percent_Identity=27.4611398963731, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21358495, Length=198, Percent_Identity=25.7575757575758, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI116007236, Length=239, Percent_Identity=23.8493723849372, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25824; Mature: 25824

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MRFRDRCVAILGGNAGIGLAAARLFAAEGAKLAITGRNAETLRAVAEELDALCIRSDMGD
CCCHHEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCC
LNDTERALEEIEDALGGIDVLFVNAGVGGFAMVPDVTPEFWDQIHSVNLRGAFFAIQRAL
CCHHHHHHHHHHHHHCCEEEEEEECCCCCEEECCCCCHHHHHHHHCCCCHHHHHHHHHHH
PLMRDGGSIVITGSIGSMAAVPGNVAYAAAKAGLRAMARIVGKELLPRRIRVNMVSPGPT
HHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC
DTEIFKRDASAEEIQGMKDMLSSVVPIGRMGTSEEVARAVLFLASAEASFINGVDLCVDG
CHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCEEECC
GCIELG
CEEECC
>Mature Secondary Structure
MRFRDRCVAILGGNAGIGLAAARLFAAEGAKLAITGRNAETLRAVAEELDALCIRSDMGD
CCCHHEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCC
LNDTERALEEIEDALGGIDVLFVNAGVGGFAMVPDVTPEFWDQIHSVNLRGAFFAIQRAL
CCHHHHHHHHHHHHHCCEEEEEEECCCCCEEECCCCCHHHHHHHHCCCCHHHHHHHHHHH
PLMRDGGSIVITGSIGSMAAVPGNVAYAAAKAGLRAMARIVGKELLPRRIRVNMVSPGPT
HHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC
DTEIFKRDASAEEIQGMKDMLSSVVPIGRMGTSEEVARAVLFLASAEASFINGVDLCVDG
CHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCEEECC
GCIELG
CEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]