Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
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Accession | NC_006840 |
Length | 2,897,536 |
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The map label for this gene is leuS [H]
Identifier: 59711360
GI number: 59711360
Start: 819983
End: 822559
Strand: Reverse
Name: leuS [H]
Synonym: VF_0753
Alternate gene names: 59711360
Gene position: 822559-819983 (Counterclockwise)
Preceding gene: 59711362
Following gene: 59711359
Centisome position: 28.39
GC content: 42.22
Gene sequence:
>2577_bases ATGCAAGAACAATATAATCCACAGGATCTTGAACAAAAGATCCAAAAACATTGGGACGACAACAAAACGTTTGTTGTAAC TGAAGACGCAAACAAAGAAAAATTCTACTGTCTCTCAATGTTCCCATACCCAAGTGGTCGTCTACACATGGGTCACGTTC GTAACTACACTATCGGTGATGTAGTTTCGCGTTACCAACGTCTACAAGGTAAAAACGTAATGCAACCTATCGGTTGGGAT GCGTTTGGTCTTCCTGCTGAAAATGCGGCTGTTAAAAATAAAACCGCTCCAGCACCTTGGACTTATGAAAATATCGAGTA CATGAAGAACCAACTTAAACTATTAGGCTTTGGTTACGACTGGAACCGTGAATTTGCAACATGTACTCCTGAATACTACC GTTGGGAACAAGAGTTCTTCACAAAACTGTACAACAAAGGTCTAGTTTACAAGAAAACCTCTTCTGTAAACTGGTGTCCT AATGACCAAACGGTTCTGGCTAACGAACAAGTTGAAGATGGTTGTTGTTGGCGTTGTGATACCCCTGTTGAACAAAAGAA AATTCCACAGTGGTTCATTAAAATTACTGAATACGCACAAGAGCTTCTTGATGATCTAGATAACCTTGATGGTTGGCCTG AAATGGTTAAAACCATGCAACGTAACTGGATTGGCCGCTCTGAAGGTGTTGAACTTTCATTTGCTGTTAATGGCGAAACC TCTCCTTTAGAAGTATATACTACACGTCCTGATACGCTAATGGGCGTAACTTACGTTGGTATTGCAGCTGGTCACCCTCT TGCAGAGAAAGCATCTCAAAATAACCCTGAGTTAGCCGCTTTTGTTGAAGAGTGCCGCAACACTAAAGTTGCTGAAGCAG AATTAGCAACAATGGAAAAGAAAGGCATGGACACTGGTCTACGTGCTATTCACCCATTAAATGGTCGTGAAGTACCAGTA TTTGTTGCTAACTTCGTATTAATGGATTACGGCACAGGTGCGGTAATGGCGGTTCCTGCTCACGATCAACGTGACTTTGA ATTTGCAACTAAATACGGTCTAGATATTATCCCTGTAATCAAACCAGAAGATGGTTCTGATTTAGATGTATCTGAAGCAG CTTACACAGAAAAAGGTGTTCTATTCGATTCAGGTGAATTCGACGGTCTTGCTTTCCAAGAAGCATTCGATGCTATCGCA GCGAAACTTGAAGCTGAAGGCAAAGGTAAGAAAACAGTAAACTTCCGTCTACGTGACTGGGGTGTATCTCGTCAACGTTA CTGGGGTGCTCCAATCCCAATGGTAACAACTGAAGATGGTGAAGTTCACCCAGTACCTGCTGACCAATTACCAGTAATTC TTCCTGAAGACGTAGTAATGGATGGCGTTACTAGTCCAATTAAAGCAGACAAAGAGTGGGCTAAAACAACATTTAACGGC GAGCCAGCTCTACGTGAAACAGATACGTTCGATACCTTTATGGAATCATCTTGGTACTATGCACGTTACTGTTCACCACA AGCTGACGATATCCTAGATCCAGAAAAAGCAAACTACTGGTTACCAGTAGACCAATACATTGGTGGTATCGAGCACGCTT GTATGCACCTATTGTATTCTCGCTTCTTCCATAAGCTTCTACGTGATGCGGGTTATGTTACTTCTGACGAACCATTCAAG CAGCTTTTATGTCAAGGTATGGTACTTGCGGATGCATTCTACTACACCAACGACAAAGGCGGTAAAGAGTGGGTTGCTCC TACGGATGTAACTATCGAGCGTGATGGTAAAGGTCGTATCGAGAAAGCCATTGATGACCAAGGTCGTGAAGTTGAACACT CAGGCATGATCAAAATGTCTAAGTCTAAAAACAACGGTATCGACCCACAAGAAATGGTAGACAAATACGGTGCTGATACC GTTCGTCTATTCATGATGTTTGCTTCACCAGCAGACATGACACTTGAATGGCAAGAGTCTGGCGTTGAGGGTGCAAACCG TTTCCTTAAACGTGTATGGAAACTGGTTCACGAGCACACAAACAAAGGCACAACTGAAGCGCTAGATACATCATCACTAA CAGGTGATCAAAAAGCACTTCGTCGTGACGTTCACAAAACAATCGCAAAAGTAAGTGATGATATTGGCCGTCGTCAAACA TTCAATACAGCAATCGCTGCTATTATGGAATTGATGAACAAGCTAAACAAAGCACCTCAAGAATCAGCACAAGATCGTGC TCTTCTTGATGAAGCACTAAAAGCGGTTGTTGCTATGCTTTACCCAATGACACCACACGCAAGTTTTGCAATGTGGGAAG CACTAGGTGAATCAGATTTAGATTCTGCAACATGGCCAACATTCGATGAGAATGCACTAGTTGAAGATGAAAAAACAATC GTAGTAATGATCAACGGTAAACTTCGTGCAAAACTGGTTGTTGCAGCTGATGCAACAGAAGAACACGTACGTGAACTAGG TCTAAAAGACGAAAACGCAATGAAGTTCCTAGATGGCTTAACGATTCGTAAAGTTATCTACGTACCTGGTAAGTTATTAA ACATCGTTGCGAACTAA
Upstream 100 bases:
>100_bases GAGTATAAGCGCTCCATTAGTTATTCTATGCCGATCAAGTATTATCTGATCAAACCGATCTCACATTTTTTGTGATCCAC TGACATAACTGGGTAAATCG
Downstream 100 bases:
>100_bases GAAACGATAAGAAAAGTAATTTGAACCATTTTTCTTATTACTTTTCTACTAAAGCATAAGCGGCTATCCGCTTGTGCTTA TTTAACCATTTTGTCTTATG
Product: leucyl-tRNA synthetase
Products: NA
Alternate protein names: Leucine--tRNA ligase; LeuRS [H]
Number of amino acids: Translated: 858; Mature: 858
Protein sequence:
>858_residues MQEQYNPQDLEQKIQKHWDDNKTFVVTEDANKEKFYCLSMFPYPSGRLHMGHVRNYTIGDVVSRYQRLQGKNVMQPIGWD AFGLPAENAAVKNKTAPAPWTYENIEYMKNQLKLLGFGYDWNREFATCTPEYYRWEQEFFTKLYNKGLVYKKTSSVNWCP NDQTVLANEQVEDGCCWRCDTPVEQKKIPQWFIKITEYAQELLDDLDNLDGWPEMVKTMQRNWIGRSEGVELSFAVNGET SPLEVYTTRPDTLMGVTYVGIAAGHPLAEKASQNNPELAAFVEECRNTKVAEAELATMEKKGMDTGLRAIHPLNGREVPV FVANFVLMDYGTGAVMAVPAHDQRDFEFATKYGLDIIPVIKPEDGSDLDVSEAAYTEKGVLFDSGEFDGLAFQEAFDAIA AKLEAEGKGKKTVNFRLRDWGVSRQRYWGAPIPMVTTEDGEVHPVPADQLPVILPEDVVMDGVTSPIKADKEWAKTTFNG EPALRETDTFDTFMESSWYYARYCSPQADDILDPEKANYWLPVDQYIGGIEHACMHLLYSRFFHKLLRDAGYVTSDEPFK QLLCQGMVLADAFYYTNDKGGKEWVAPTDVTIERDGKGRIEKAIDDQGREVEHSGMIKMSKSKNNGIDPQEMVDKYGADT VRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVHEHTNKGTTEALDTSSLTGDQKALRRDVHKTIAKVSDDIGRRQT FNTAIAAIMELMNKLNKAPQESAQDRALLDEALKAVVAMLYPMTPHASFAMWEALGESDLDSATWPTFDENALVEDEKTI VVMINGKLRAKLVVAADATEEHVRELGLKDENAMKFLDGLTIRKVIYVPGKLLNIVAN
Sequences:
>Translated_858_residues MQEQYNPQDLEQKIQKHWDDNKTFVVTEDANKEKFYCLSMFPYPSGRLHMGHVRNYTIGDVVSRYQRLQGKNVMQPIGWD AFGLPAENAAVKNKTAPAPWTYENIEYMKNQLKLLGFGYDWNREFATCTPEYYRWEQEFFTKLYNKGLVYKKTSSVNWCP NDQTVLANEQVEDGCCWRCDTPVEQKKIPQWFIKITEYAQELLDDLDNLDGWPEMVKTMQRNWIGRSEGVELSFAVNGET SPLEVYTTRPDTLMGVTYVGIAAGHPLAEKASQNNPELAAFVEECRNTKVAEAELATMEKKGMDTGLRAIHPLNGREVPV FVANFVLMDYGTGAVMAVPAHDQRDFEFATKYGLDIIPVIKPEDGSDLDVSEAAYTEKGVLFDSGEFDGLAFQEAFDAIA AKLEAEGKGKKTVNFRLRDWGVSRQRYWGAPIPMVTTEDGEVHPVPADQLPVILPEDVVMDGVTSPIKADKEWAKTTFNG EPALRETDTFDTFMESSWYYARYCSPQADDILDPEKANYWLPVDQYIGGIEHACMHLLYSRFFHKLLRDAGYVTSDEPFK QLLCQGMVLADAFYYTNDKGGKEWVAPTDVTIERDGKGRIEKAIDDQGREVEHSGMIKMSKSKNNGIDPQEMVDKYGADT VRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVHEHTNKGTTEALDTSSLTGDQKALRRDVHKTIAKVSDDIGRRQT FNTAIAAIMELMNKLNKAPQESAQDRALLDEALKAVVAMLYPMTPHASFAMWEALGESDLDSATWPTFDENALVEDEKTI VVMINGKLRAKLVVAADATEEHVRELGLKDENAMKFLDGLTIRKVIYVPGKLLNIVAN >Mature_858_residues MQEQYNPQDLEQKIQKHWDDNKTFVVTEDANKEKFYCLSMFPYPSGRLHMGHVRNYTIGDVVSRYQRLQGKNVMQPIGWD AFGLPAENAAVKNKTAPAPWTYENIEYMKNQLKLLGFGYDWNREFATCTPEYYRWEQEFFTKLYNKGLVYKKTSSVNWCP NDQTVLANEQVEDGCCWRCDTPVEQKKIPQWFIKITEYAQELLDDLDNLDGWPEMVKTMQRNWIGRSEGVELSFAVNGET SPLEVYTTRPDTLMGVTYVGIAAGHPLAEKASQNNPELAAFVEECRNTKVAEAELATMEKKGMDTGLRAIHPLNGREVPV FVANFVLMDYGTGAVMAVPAHDQRDFEFATKYGLDIIPVIKPEDGSDLDVSEAAYTEKGVLFDSGEFDGLAFQEAFDAIA AKLEAEGKGKKTVNFRLRDWGVSRQRYWGAPIPMVTTEDGEVHPVPADQLPVILPEDVVMDGVTSPIKADKEWAKTTFNG EPALRETDTFDTFMESSWYYARYCSPQADDILDPEKANYWLPVDQYIGGIEHACMHLLYSRFFHKLLRDAGYVTSDEPFK QLLCQGMVLADAFYYTNDKGGKEWVAPTDVTIERDGKGRIEKAIDDQGREVEHSGMIKMSKSKNNGIDPQEMVDKYGADT VRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVHEHTNKGTTEALDTSSLTGDQKALRRDVHKTIAKVSDDIGRRQT FNTAIAAIMELMNKLNKAPQESAQDRALLDEALKAVVAMLYPMTPHASFAMWEALGESDLDSATWPTFDENALVEDEKTI VVMINGKLRAKLVVAADATEEHVRELGLKDENAMKFLDGLTIRKVIYVPGKLLNIVAN
Specific function: Unknown
COG id: COG0495
COG function: function code J; Leucyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI7661872, Length=887, Percent_Identity=34.9492671927847, Blast_Score=511, Evalue=1e-144, Organism=Homo sapiens, GI46852147, Length=490, Percent_Identity=22.8571428571429, Blast_Score=86, Evalue=1e-16, Organism=Escherichia coli, GI1786861, Length=858, Percent_Identity=74.9417249417249, Blast_Score=1367, Evalue=0.0, Organism=Escherichia coli, GI1790708, Length=392, Percent_Identity=27.0408163265306, Blast_Score=125, Evalue=1e-29, Organism=Caenorhabditis elegans, GI71997517, Length=811, Percent_Identity=31.6892725030826, Blast_Score=373, Evalue=1e-103, Organism=Caenorhabditis elegans, GI71997510, Length=811, Percent_Identity=31.6892725030826, Blast_Score=372, Evalue=1e-103, Organism=Caenorhabditis elegans, GI212645227, Length=379, Percent_Identity=29.5514511873351, Blast_Score=147, Evalue=2e-35, Organism=Caenorhabditis elegans, GI71980946, Length=154, Percent_Identity=29.8701298701299, Blast_Score=70, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6323414, Length=813, Percent_Identity=37.3923739237392, Blast_Score=511, Evalue=1e-145, Organism=Saccharomyces cerevisiae, GI6321531, Length=381, Percent_Identity=25.7217847769029, Blast_Score=108, Evalue=3e-24, Organism=Saccharomyces cerevisiae, GI6325217, Length=408, Percent_Identity=22.5490196078431, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI21355409, Length=888, Percent_Identity=33.1081081081081, Blast_Score=437, Evalue=1e-122, Organism=Drosophila melanogaster, GI17864482, Length=441, Percent_Identity=23.8095238095238, Blast_Score=103, Evalue=5e-22, Organism=Drosophila melanogaster, GI24653289, Length=441, Percent_Identity=23.8095238095238, Blast_Score=103, Evalue=5e-22, Organism=Drosophila melanogaster, GI281366294, Length=476, Percent_Identity=23.3193277310924, Blast_Score=86, Evalue=1e-16,
Paralogues:
None
Copy number: 800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001412 - InterPro: IPR002300 - InterPro: IPR002302 - InterPro: IPR014729 - InterPro: IPR009080 - InterPro: IPR013155 - InterPro: IPR009008 [H]
Pfam domain/function: PF08264 Anticodon_1; PF00133 tRNA-synt_1 [H]
EC number: =6.1.1.4 [H]
Molecular weight: Translated: 97020; Mature: 97020
Theoretical pI: Translated: 4.69; Mature: 4.69
Prosite motif: PS00178 AA_TRNA_LIGASE_I ; PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQEQYNPQDLEQKIQKHWDDNKTFVVTEDANKEKFYCLSMFPYPSGRLHMGHVRNYTIGD CCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCCEEECCCCCCCHHH VVSRYQRLQGKNVMQPIGWDAFGLPAENAAVKNKTAPAPWTYENIEYMKNQLKLLGFGYD HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEECCC WNREFATCTPEYYRWEQEFFTKLYNKGLVYKKTSSVNWCPNDQTVLANEQVEDGCCWRCD CCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEEECCCCCCCCCCCCC TPVEQKKIPQWFIKITEYAQELLDDLDNLDGWPEMVKTMQRNWIGRSEGVELSFAVNGET CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCC SPLEVYTTRPDTLMGVTYVGIAAGHPLAEKASQNNPELAAFVEECRNTKVAEAELATMEK CCEEEEECCCCCEEHHEEEEEECCCCHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHH KGMDTGLRAIHPLNGREVPVFVANFVLMDYGTGAVMAVPAHDQRDFEFATKYGLDIIPVI HCCCCCHHHCCCCCCCCCHHHEEEEHHEECCCCEEEEECCCCCCCCHHHHHCCCEEEEEE KPEDGSDLDVSEAAYTEKGVLFDSGEFDGLAFQEAFDAIAAKLEAEGKGKKTVNFRLRDW CCCCCCCCCCHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECC GVSRQRYWGAPIPMVTTEDGEVHPVPADQLPVILPEDVVMDGVTSPIKADKEWAKTTFNG CCCCHHCCCCCCCEEECCCCCCCCCCCCCCCEECCCHHHHCCCCCCCCCCHHHHHCCCCC EPALRETDTFDTFMESSWYYARYCSPQADDILDPEKANYWLPVDQYIGGIEHACMHLLYS CCCCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEHHHHHCHHHHHHHHHHHH RFFHKLLRDAGYVTSDEPFKQLLCQGMVLADAFYYTNDKGGKEWVAPTDVTIERDGKGRI HHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHEEEECCCCCCCCCCCCCEEEEECCCCHH EKAIDDQGREVEHSGMIKMSKSKNNGIDPQEMVDKYGADTVRLFMMFASPADMTLEWQES HHHHCCCCCEECCCCCEEEECCCCCCCCHHHHHHHHCCHHEEEEHHHCCCCCCEEEEHHC GVEGANRFLKRVWKLVHEHTNKGTTEALDTSSLTGDQKALRRDVHKTIAKVSDDIGRRQT CCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH FNTAIAAIMELMNKLNKAPQESAQDRALLDEALKAVVAMLYPMTPHASFAMWEALGESDL HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCC DSATWPTFDENALVEDEKTIVVMINGKLRAKLVVAADATEEHVRELGLKDENAMKFLDGL CCCCCCCCCCCCEECCCCEEEEEECCCEEEEEEEEECCHHHHHHHCCCCCHHHHHHHHCC TIRKVIYVPGKLLNIVAN CEEHEEECCHHHHHHHCC >Mature Secondary Structure MQEQYNPQDLEQKIQKHWDDNKTFVVTEDANKEKFYCLSMFPYPSGRLHMGHVRNYTIGD CCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCCEEECCCCCCCHHH VVSRYQRLQGKNVMQPIGWDAFGLPAENAAVKNKTAPAPWTYENIEYMKNQLKLLGFGYD HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEECCC WNREFATCTPEYYRWEQEFFTKLYNKGLVYKKTSSVNWCPNDQTVLANEQVEDGCCWRCD CCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEEECCCCCCCCCCCCC TPVEQKKIPQWFIKITEYAQELLDDLDNLDGWPEMVKTMQRNWIGRSEGVELSFAVNGET CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCC SPLEVYTTRPDTLMGVTYVGIAAGHPLAEKASQNNPELAAFVEECRNTKVAEAELATMEK CCEEEEECCCCCEEHHEEEEEECCCCHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHH KGMDTGLRAIHPLNGREVPVFVANFVLMDYGTGAVMAVPAHDQRDFEFATKYGLDIIPVI HCCCCCHHHCCCCCCCCCHHHEEEEHHEECCCCEEEEECCCCCCCCHHHHHCCCEEEEEE KPEDGSDLDVSEAAYTEKGVLFDSGEFDGLAFQEAFDAIAAKLEAEGKGKKTVNFRLRDW CCCCCCCCCCHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECC GVSRQRYWGAPIPMVTTEDGEVHPVPADQLPVILPEDVVMDGVTSPIKADKEWAKTTFNG CCCCHHCCCCCCCEEECCCCCCCCCCCCCCCEECCCHHHHCCCCCCCCCCHHHHHCCCCC EPALRETDTFDTFMESSWYYARYCSPQADDILDPEKANYWLPVDQYIGGIEHACMHLLYS CCCCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEHHHHHCHHHHHHHHHHHH RFFHKLLRDAGYVTSDEPFKQLLCQGMVLADAFYYTNDKGGKEWVAPTDVTIERDGKGRI HHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHEEEECCCCCCCCCCCCCEEEEECCCCHH EKAIDDQGREVEHSGMIKMSKSKNNGIDPQEMVDKYGADTVRLFMMFASPADMTLEWQES HHHHCCCCCEECCCCCEEEECCCCCCCCHHHHHHHHCCHHEEEEHHHCCCCCCEEEEHHC GVEGANRFLKRVWKLVHEHTNKGTTEALDTSSLTGDQKALRRDVHKTIAKVSDDIGRRQT CCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH FNTAIAAIMELMNKLNKAPQESAQDRALLDEALKAVVAMLYPMTPHASFAMWEALGESDL HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCC DSATWPTFDENALVEDEKTIVVMINGKLRAKLVVAADATEEHVRELGLKDENAMKFLDGL CCCCCCCCCCCCEECCCCEEEEEECCCEEEEEEEEECCHHHHHHHCCCCCHHHHHHHHCC TIRKVIYVPGKLLNIVAN CEEHEEECCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA