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The map label for this gene is rlpB [H]

Identifier: 59711359

GI number: 59711359

Start: 819198

End: 819755

Strand: Reverse

Name: rlpB [H]

Synonym: VF_0752

Alternate gene names: 59711359

Gene position: 819755-819198 (Counterclockwise)

Preceding gene: 59711360

Following gene: 59711358

Centisome position: 28.29

GC content: 39.61

Gene sequence:

>558_bases
ATGACTTCAGCCTGTGGGTTTCACCTACGTGGTGATTATTTATTACCAGATGAAGTTCATGAAATATCATTAACGAGTTT
TGACCAATACAGTTCACTAACTCGTGATGTTCAAAAGCAACTTCGCATGAATGGTATCCGTCAGGTCGCACCAACAACGG
TAACTCCAAGTTTAGATTTAATCAGTGAAAGTCTAAATGAGCGTACTTTGTCACTTTATCAAAACAGCCGTGCGGCCGAA
AAAGAGCTTACTTACAATGTTAGCTATAGCGTTTTAATTCCGGGCCATGATTTAAAAACATATACAACAACGGTAAACCG
TAATTACCTTGATAACCCACTAACAGCCTTAGCAAAATCGGTTGAACGAGATATGATCGAAGAAGAGATGCGAGCTCAAG
CAGCTGAGCAGATTTTACGCCAAATGGCGCGTTTAAAAGCAGATGATGCACCAGTGGAAACAAGCGATGTAATTACGCAC
GATGATGAAACTGAAAGTAAAGTGACAACGAAAGAAGTCATAAAATCAATGAGCACTACAGCTGAAACAACTCAATAA

Upstream 100 bases:

>100_bases
TTAAATAAGCATTTTTATCACCACTTGAGGGAGTTACTCGGTGAAACGACTTTTATCTCTATTTTCTCTTCGAACGGTAA
TCGTTCTGACTCTTTCATTA

Downstream 100 bases:

>100_bases
TCATGCGTGTATTCCCTGAACAATTAGCTCAAAACTTAGAACGTGGGCTACGTCAATGCTATTTGCTGTTTGGTAATGAG
CCTCTGTTAAAACAAGAAAG

Product: lipoprotein component of outer membrane LPS assembly complex

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 184

Protein sequence:

>185_residues
MTSACGFHLRGDYLLPDEVHEISLTSFDQYSSLTRDVQKQLRMNGIRQVAPTTVTPSLDLISESLNERTLSLYQNSRAAE
KELTYNVSYSVLIPGHDLKTYTTTVNRNYLDNPLTALAKSVERDMIEEEMRAQAAEQILRQMARLKADDAPVETSDVITH
DDETESKVTTKEVIKSMSTTAETTQ

Sequences:

>Translated_185_residues
MTSACGFHLRGDYLLPDEVHEISLTSFDQYSSLTRDVQKQLRMNGIRQVAPTTVTPSLDLISESLNERTLSLYQNSRAAE
KELTYNVSYSVLIPGHDLKTYTTTVNRNYLDNPLTALAKSVERDMIEEEMRAQAAEQILRQMARLKADDAPVETSDVITH
DDETESKVTTKEVIKSMSTTAETTQ
>Mature_184_residues
TSACGFHLRGDYLLPDEVHEISLTSFDQYSSLTRDVQKQLRMNGIRQVAPTTVTPSLDLISESLNERTLSLYQNSRAAEK
ELTYNVSYSVLIPGHDLKTYTTTVNRNYLDNPLTALAKSVERDMIEEEMRAQAAEQILRQMARLKADDAPVETSDVITHD
DETESKVTTKEVIKSMSTTAETTQ

Specific function: Together with lptD, is involved in the assembly of LPS in the outer leaflet of the outer membrane [H]

COG id: COG2980

COG function: function code M; Rare lipoprotein B

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptE lipoprotein family [H]

Homologues:

Organism=Escherichia coli, GI1786860, Length=152, Percent_Identity=38.1578947368421, Blast_Score=107, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007485 [H]

Pfam domain/function: PF04390 RplB [H]

EC number: NA

Molecular weight: Translated: 20836; Mature: 20704

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSACGFHLRGDYLLPDEVHEISLTSFDQYSSLTRDVQKQLRMNGIRQVAPTTVTPSLDL
CCCCCCCEECCCEECCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
ISESLNERTLSLYQNSRAAEKELTYNVSYSVLIPGHDLKTYTTTVNRNYLDNPLTALAKS
HHHHHHHHHHHHHHCCCHHHHHEEEECEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHH
VERDMIEEEMRAQAAEQILRQMARLKADDAPVETSDVITHDDETESKVTTKEVIKSMSTT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
AETTQ
HCCCC
>Mature Secondary Structure 
TSACGFHLRGDYLLPDEVHEISLTSFDQYSSLTRDVQKQLRMNGIRQVAPTTVTPSLDL
CCCCCCEECCCEECCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
ISESLNERTLSLYQNSRAAEKELTYNVSYSVLIPGHDLKTYTTTVNRNYLDNPLTALAKS
HHHHHHHHHHHHHHCCCHHHHHEEEECEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHH
VERDMIEEEMRAQAAEQILRQMARLKADDAPVETSDVITHDDETESKVTTKEVIKSMSTT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
AETTQ
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA