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The map label for this gene is licR [H]

Identifier: 226223538

GI number: 226223538

Start: 954963

End: 956861

Strand: Direct

Name: licR [H]

Synonym: Lm4b_00938

Alternate gene names: 226223538

Gene position: 954963-956861 (Clockwise)

Preceding gene: 226223537

Following gene: 226223539

Centisome position: 32.79

GC content: 36.07

Gene sequence:

>1899_bases
ATGGATACTCAAAAAGAAATACTAGCTTATTTGCATAAACAGGAAAATAAGTGGGTTACCTCAAATGAGTTAGCAGCTTT
TTGCGAGTGTACAACACGAACCATTCGCAACAACATTTCTAAAATAAATGAAGCGACACCGAATTTAATTCGTTCTGCAA
AACAAGGCTATCAAATCAACCAGCGTATTCCATTTGAACTTCAGACAGAAAGTGATGTAACAGAACGAAAGTCAAAACTC
TTACTCGAATTAATTAAAAACTCTACTAAAGGCGTTGACCTGTTTGAACTTGCGGATATTTTATATATTTCAGAAGTAAC
CTTAAAAAAAGACATCCAACAATTAAAAAACGAACTAAAAGAAGCCGATGTCCAAATCGTCACCAGTAAAGACCGAATCA
AATTAATCGGAAAAGAACGTGCCAAACGAAAATATATGATTTCCTTGCTATATGAAGAAGGCGGATACCGTGAAAGTATC
AAAAGTCGCATTCAAGAAATGATTGAATTTGTTTCTATCGATAAACTGCAAAACATCGTAAAAGAAGTTTTAACGGAAGA
ATCCATTACAACCAATCAATATTCGATGATGAACATTGTCTTACATTACGCCATTAGCATCGTCCGAATTCAACAAGGAA
ATACACTCATTGAAACCCAAAAAACACTCATCCGAAAACACTCCAAAGAATACGAAATATCGAAAAAAATTGCTAAAATT
CTCTCGGAAGAATACCAAATCCATTTTTCAGAGGCAGAGACAAAACAACTCGGACTTTTATATGTTGGCTTGCAAAATGA
ACAATCTGCTAATGCCAATCATGGCGAACTGGACCAATTTGTCGATAAAAAAATCATCAAAGCACTTAAAAGCGTGCTCG
CCAATGTGGAAGAAACCTATCTCATCGATCTCCAAAATGAGCAACTTTTTATCAAGCTAGCGATTCACGTCCAAAGCCTA
TACTATCGCTCACGTTACAAAGCGTACACCAGAAATTTAAGCTTACTTGATATTAAAACGTCTTACCCAGTAACTTTTGA
TATTGCTGTTTACATTTCTTCTTTGCTACAAGAAAAACTAGCGATTGACTTTAACGAAGATGAAATTTCTTTTATCGCGC
TGCATATCGGCTCTTTTCTAGAAAGTGAAAACCGAGATTATATTCGCTTAGAAATAGGCCTACTTATTGAGGATTATCAC
GATTTAAGAACAAATATGCTGAAAAAACTGCGCGCACGATTTGAAAATGAAGCTACCATCAAACTGATAGAAAACGAGGA
CTCTGAAGAAAATTTTGATATCATTTTAACAACAAACCGAGATATTGCTCTTGAAAAAGCGGGTTCCATTTTTATTCATC
CCTTACTAACGACGAAGGATATCAAGAAAATCAGCAATCGAATCCAAACAAAGAAAAAAATCTTGGAAAATCACTTGCGA
GGTCAACAAATTGATCGCTACATCGTTCGTTCCCTCTACGCCAACCAAATTGACCCCTCAGAACTGACACCCGCAAAAAT
CAGAGAGCAAATGATTTCTAAAATGGAAAAACAAACCTTCGTCACGCCGGAATTTAAAGAAAAAGTCGAAAAAAGGGAAC
GAATGGCGCCAACAAGCTTCCCATCCGGCATTGCTATACCACATTCTATCAAGAATGATGCCCTTCAAAGTGGTGTATCT
ATAATGACGCTACAAGAGCCGATTTATTGGAATGACGTCAAAATAAAAATAATTGCTCTCGTCGCCATCAGCAAAAAAGA
TGCAACAGAGTTCAATGATTTTTTTGAAAAGTTTGTAGAAATCGTCTCCGAACCGATTAATACTAAACGTTTATCAATGG
CCGAAAGTTTCGAGGAGTTCATCCAAAAACTAAAAATGATGATGGAAGAAAGTGAGTAA

Upstream 100 bases:

>100_bases
GTCTAATGGGGAAGACTTAGAAGCTTAATGTAACAGAGCGCCAGTTGTGGTAGTTGATAGCTAATACAACTGGCTTTCGA
TATATAGGGGGTAACAAAAA

Downstream 100 bases:

>100_bases
ATGGCCACACATAAGCCGTGTAATTCTATTTACACGGCTTATAAAGGTTGAAGTGACGATAAAATTACGCTATAATATAA
CCATCAAACGAAAAGGAGTG

Product: transcription antiterminator BglG family

Products: NA

Alternate protein names: Putative phosphotransferase enzyme IIB component; Putative PTS system EIIB component; Putative phosphotransferase enzyme IIA component; Putative PTS system EIIA component [H]

Number of amino acids: Translated: 632; Mature: 632

Protein sequence:

>632_residues
MDTQKEILAYLHKQENKWVTSNELAAFCECTTRTIRNNISKINEATPNLIRSAKQGYQINQRIPFELQTESDVTERKSKL
LLELIKNSTKGVDLFELADILYISEVTLKKDIQQLKNELKEADVQIVTSKDRIKLIGKERAKRKYMISLLYEEGGYRESI
KSRIQEMIEFVSIDKLQNIVKEVLTEESITTNQYSMMNIVLHYAISIVRIQQGNTLIETQKTLIRKHSKEYEISKKIAKI
LSEEYQIHFSEAETKQLGLLYVGLQNEQSANANHGELDQFVDKKIIKALKSVLANVEETYLIDLQNEQLFIKLAIHVQSL
YYRSRYKAYTRNLSLLDIKTSYPVTFDIAVYISSLLQEKLAIDFNEDEISFIALHIGSFLESENRDYIRLEIGLLIEDYH
DLRTNMLKKLRARFENEATIKLIENEDSEENFDIILTTNRDIALEKAGSIFIHPLLTTKDIKKISNRIQTKKKILENHLR
GQQIDRYIVRSLYANQIDPSELTPAKIREQMISKMEKQTFVTPEFKEKVEKRERMAPTSFPSGIAIPHSIKNDALQSGVS
IMTLQEPIYWNDVKIKIIALVAISKKDATEFNDFFEKFVEIVSEPINTKRLSMAESFEEFIQKLKMMMEESE

Sequences:

>Translated_632_residues
MDTQKEILAYLHKQENKWVTSNELAAFCECTTRTIRNNISKINEATPNLIRSAKQGYQINQRIPFELQTESDVTERKSKL
LLELIKNSTKGVDLFELADILYISEVTLKKDIQQLKNELKEADVQIVTSKDRIKLIGKERAKRKYMISLLYEEGGYRESI
KSRIQEMIEFVSIDKLQNIVKEVLTEESITTNQYSMMNIVLHYAISIVRIQQGNTLIETQKTLIRKHSKEYEISKKIAKI
LSEEYQIHFSEAETKQLGLLYVGLQNEQSANANHGELDQFVDKKIIKALKSVLANVEETYLIDLQNEQLFIKLAIHVQSL
YYRSRYKAYTRNLSLLDIKTSYPVTFDIAVYISSLLQEKLAIDFNEDEISFIALHIGSFLESENRDYIRLEIGLLIEDYH
DLRTNMLKKLRARFENEATIKLIENEDSEENFDIILTTNRDIALEKAGSIFIHPLLTTKDIKKISNRIQTKKKILENHLR
GQQIDRYIVRSLYANQIDPSELTPAKIREQMISKMEKQTFVTPEFKEKVEKRERMAPTSFPSGIAIPHSIKNDALQSGVS
IMTLQEPIYWNDVKIKIIALVAISKKDATEFNDFFEKFVEIVSEPINTKRLSMAESFEEFIQKLKMMMEESE
>Mature_632_residues
MDTQKEILAYLHKQENKWVTSNELAAFCECTTRTIRNNISKINEATPNLIRSAKQGYQINQRIPFELQTESDVTERKSKL
LLELIKNSTKGVDLFELADILYISEVTLKKDIQQLKNELKEADVQIVTSKDRIKLIGKERAKRKYMISLLYEEGGYRESI
KSRIQEMIEFVSIDKLQNIVKEVLTEESITTNQYSMMNIVLHYAISIVRIQQGNTLIETQKTLIRKHSKEYEISKKIAKI
LSEEYQIHFSEAETKQLGLLYVGLQNEQSANANHGELDQFVDKKIIKALKSVLANVEETYLIDLQNEQLFIKLAIHVQSL
YYRSRYKAYTRNLSLLDIKTSYPVTFDIAVYISSLLQEKLAIDFNEDEISFIALHIGSFLESENRDYIRLEIGLLIEDYH
DLRTNMLKKLRARFENEATIKLIENEDSEENFDIILTTNRDIALEKAGSIFIHPLLTTKDIKKISNRIQTKKKILENHLR
GQQIDRYIVRSLYANQIDPSELTPAKIREQMISKMEKQTFVTPEFKEKVEKRERMAPTSFPSGIAIPHSIKNDALQSGVS
IMTLQEPIYWNDVKIKIIALVAISKKDATEFNDFFEKFVEIVSEPINTKRLSMAESFEEFIQKLKMMMEESE

Specific function: Positive regulator of the licABCH operon [H]

COG id: COG3711

COG function: function code K; Transcriptional antiterminator

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIIB type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013196
- InterPro:   IPR007737
- InterPro:   IPR011608
- InterPro:   IPR016152
- InterPro:   IPR002178
- InterPro:   IPR013011
- InterPro:   IPR003501
- InterPro:   IPR011991 [H]

Pfam domain/function: PF08279 HTH_11; PF05043 Mga; PF00874 PRD; PF00359 PTS_EIIA_2; PF02302 PTS_IIB [H]

EC number: =2.7.1.69 [H]

Molecular weight: Translated: 73502; Mature: 73502

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS51094 PTS_EIIA_TYPE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTQKEILAYLHKQENKWVTSNELAAFCECTTRTIRNNISKINEATPNLIRSAKQGYQIN
CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEEC
QRIPFELQTESDVTERKSKLLLELIKNSTKGVDLFELADILYISEVTLKKDIQQLKNELK
CCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EADVQIVTSKDRIKLIGKERAKRKYMISLLYEEGGYRESIKSRIQEMIEFVSIDKLQNIV
HCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
KEVLTEESITTNQYSMMNIVLHYAISIVRIQQGNTLIETQKTLIRKHSKEYEISKKIAKI
HHHHCCCCCCCCHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHH
LSEEYQIHFSEAETKQLGLLYVGLQNEQSANANHGELDQFVDKKIIKALKSVLANVEETY
HHHHHEEEECCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEE
LIDLQNEQLFIKLAIHVQSLYYRSRYKAYTRNLSLLDIKTSYPVTFDIAVYISSLLQEKL
EEEECCCEEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEHHHHHHHHHHHHHH
AIDFNEDEISFIALHIGSFLESENRDYIRLEIGLLIEDYHDLRTNMLKKLRARFENEATI
CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEE
KLIENEDSEENFDIILTTNRDIALEKAGSIFIHPLLTTKDIKKISNRIQTKKKILENHLR
EEEECCCCCCCCEEEEECCCCEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHC
GQQIDRYIVRSLYANQIDPSELTPAKIREQMISKMEKQTFVTPEFKEKVEKRERMAPTSF
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC
PSGIAIPHSIKNDALQSGVSIMTLQEPIYWNDVKIKIIALVAISKKDATEFNDFFEKFVE
CCCCCCCCHHHHHHHHCCCEEEEECCCCEECCCEEEEEEEEEECCCCCHHHHHHHHHHHH
IVSEPINTKRLSMAESFEEFIQKLKMMMEESE
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDTQKEILAYLHKQENKWVTSNELAAFCECTTRTIRNNISKINEATPNLIRSAKQGYQIN
CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEEC
QRIPFELQTESDVTERKSKLLLELIKNSTKGVDLFELADILYISEVTLKKDIQQLKNELK
CCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EADVQIVTSKDRIKLIGKERAKRKYMISLLYEEGGYRESIKSRIQEMIEFVSIDKLQNIV
HCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
KEVLTEESITTNQYSMMNIVLHYAISIVRIQQGNTLIETQKTLIRKHSKEYEISKKIAKI
HHHHCCCCCCCCHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHH
LSEEYQIHFSEAETKQLGLLYVGLQNEQSANANHGELDQFVDKKIIKALKSVLANVEETY
HHHHHEEEECCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEE
LIDLQNEQLFIKLAIHVQSLYYRSRYKAYTRNLSLLDIKTSYPVTFDIAVYISSLLQEKL
EEEECCCEEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEHHHHHHHHHHHHHH
AIDFNEDEISFIALHIGSFLESENRDYIRLEIGLLIEDYHDLRTNMLKKLRARFENEATI
CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEE
KLIENEDSEENFDIILTTNRDIALEKAGSIFIHPLLTTKDIKKISNRIQTKKKILENHLR
EEEECCCCCCCCEEEEECCCCEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHC
GQQIDRYIVRSLYANQIDPSELTPAKIREQMISKMEKQTFVTPEFKEKVEKRERMAPTSF
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC
PSGIAIPHSIKNDALQSGVSIMTLQEPIYWNDVKIKIIALVAISKKDATEFNDFFEKFVE
CCCCCCCCHHHHHHHHCCCEEEEECCCCEECCCEEEEEEEEEECCCCCHHHHHHHHHHHH
IVSEPINTKRLSMAESFEEFIQKLKMMMEESE
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8990303; 8969509; 9384377; 10438772 [H]