Definition Methanosarcina mazei Go1 chromosome, complete genome.
Accession NC_003901
Length 4,096,345

Click here to switch to the map view.

The map label for this gene is 21226233

Identifier: 21226233

GI number: 21226233

Start: 162643

End: 163413

Strand: Direct

Name: 21226233

Synonym: MM_0131

Alternate gene names: NA

Gene position: 162643-163413 (Clockwise)

Preceding gene: 21226231

Following gene: 21226234

Centisome position: 3.97

GC content: 42.02

Gene sequence:

>771_bases
ATGCCTGAGAAGCCCGATAGACTGAGAGAAGAAGCAGTAAAACATTTTAACAGAACAATTGACCTGATGCAGGAAGGAAA
GCCCGAAGAATCCCTTGAAGCGCTCCAGAAAGCTGAAAATGCCGCACAGGAAGCAAAAAGTGACGCTATTTTGTTCCACA
CCTTAAAAGCGAGGGGTCAGATCCTTCAGTCCCTTGGCAGGCTTGAAGAAGCTCTGGATACTTACGTTTTTTCCTTAAAA
ATCAGCTATAAACTGCTCTCAGAAGACCCGGGAAACGAACTCTATAAAGACACCATCCGTCTTAACCTCAACAATATCGG
AAACCTCGGCAATATTTTTCAGAGAGCTGGCAACTTTATCCTATCGAAACAATGCTATGAGACCGGACTTGAGATCTGCC
AGAAGCTTCTTGATTCCCACCCGGAAAACACCTTTTATCAAATGTATGCAGGAAATACCCTCAACAATCTCGGGGAACTG
CTTTTTAGCGTGGGACAGATAGAAGAAGCAAAAGAAAAATACGAAAAAGCCCTGGAAATATATGAAAAGCTCCTTCAAAA
CTACCCTGAAGATACGGAATACCTCTCAGATAAAGAAATGACCCTTAACAACCTTGGAATTCTCTTTTCTCAAAAAGAGC
AAAAAGAAGCGGCAAAAAAGAACTTCAAAGAATCTCTTGAAATCCTGGAAATCCTGAGCAAAAAAGACCCCAGAGATCAG
AAGCTCAAGGAAGAAATTAGCCTCAGGCGGGAAAAGCTTGAAAAGATTTGA

Upstream 100 bases:

>100_bases
GTTTTTAATAATATATAAAAAGTTGGGAAAAGAAAGGAACAGGAAGAAAAAACGAATTCGATAACATAATCTATAAGGCA
ATAAAAGTCCTTTTTTTAAT

Downstream 100 bases:

>100_bases
AACATGATTTCTGAAGCAAATCGAATAAATCTTCAAAGAAACGTTTCTCTTTTTACATACATGAATTTTTTATATATAAG
AGTTTATAAAACAAACATTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MPEKPDRLREEAVKHFNRTIDLMQEGKPEESLEALQKAENAAQEAKSDAILFHTLKARGQILQSLGRLEEALDTYVFSLK
ISYKLLSEDPGNELYKDTIRLNLNNIGNLGNIFQRAGNFILSKQCYETGLEICQKLLDSHPENTFYQMYAGNTLNNLGEL
LFSVGQIEEAKEKYEKALEIYEKLLQNYPEDTEYLSDKEMTLNNLGILFSQKEQKEAAKKNFKESLEILEILSKKDPRDQ
KLKEEISLRREKLEKI

Sequences:

>Translated_256_residues
MPEKPDRLREEAVKHFNRTIDLMQEGKPEESLEALQKAENAAQEAKSDAILFHTLKARGQILQSLGRLEEALDTYVFSLK
ISYKLLSEDPGNELYKDTIRLNLNNIGNLGNIFQRAGNFILSKQCYETGLEICQKLLDSHPENTFYQMYAGNTLNNLGEL
LFSVGQIEEAKEKYEKALEIYEKLLQNYPEDTEYLSDKEMTLNNLGILFSQKEQKEAAKKNFKESLEILEILSKKDPRDQ
KLKEEISLRREKLEKI
>Mature_255_residues
PEKPDRLREEAVKHFNRTIDLMQEGKPEESLEALQKAENAAQEAKSDAILFHTLKARGQILQSLGRLEEALDTYVFSLKI
SYKLLSEDPGNELYKDTIRLNLNNIGNLGNIFQRAGNFILSKQCYETGLEICQKLLDSHPENTFYQMYAGNTLNNLGELL
FSVGQIEEAKEKYEKALEIYEKLLQNYPEDTEYLSDKEMTLNNLGILFSQKEQKEAAKKNFKESLEILEILSKKDPRDQK
LKEEISLRREKLEKI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29626; Mature: 29495

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION L=RR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEKPDRLREEAVKHFNRTIDLMQEGKPEESLEALQKAENAAQEAKSDAILFHTLKARGQ
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
ILQSLGRLEEALDTYVFSLKISYKLLSEDPGNELYKDTIRLNLNNIGNLGNIFQRAGNFI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHCCCCHHHHHHHHHHHH
LSKQCYETGLEICQKLLDSHPENTFYQMYAGNTLNNLGELLFSVGQIEEAKEKYEKALEI
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YEKLLQNYPEDTEYLSDKEMTLNNLGILFSQKEQKEAAKKNFKESLEILEILSKKDPRDQ
HHHHHHCCCCHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
KLKEEISLRREKLEKI
HHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PEKPDRLREEAVKHFNRTIDLMQEGKPEESLEALQKAENAAQEAKSDAILFHTLKARGQ
CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
ILQSLGRLEEALDTYVFSLKISYKLLSEDPGNELYKDTIRLNLNNIGNLGNIFQRAGNFI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHCCCCHHHHHHHHHHHH
LSKQCYETGLEICQKLLDSHPENTFYQMYAGNTLNNLGELLFSVGQIEEAKEKYEKALEI
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YEKLLQNYPEDTEYLSDKEMTLNNLGILFSQKEQKEAAKKNFKESLEILEILSKKDPRDQ
HHHHHHCCCCHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
KLKEEISLRREKLEKI
HHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA