Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

Click here to switch to the map view.

The map label for this gene is 209694014

Identifier: 209694014

GI number: 209694014

Start: 450040

End: 450465

Strand: Reverse

Name: 209694014

Synonym: VSAL_I0413

Alternate gene names: NA

Gene position: 450465-450040 (Counterclockwise)

Preceding gene: 209694015

Following gene: 209694013

Centisome position: 13.55

GC content: 38.03

Gene sequence:

>426_bases
ATGATTATGAAAAAGTTATTGTGTTTATTTATGTTGATATTTAGTCAATCCTCTTTTGCTTCAGACGCAATTTATACTGG
CTTCTTTAGCAATAAAGCGATTGATGGTTATGACAGTGTTAGTTACTTCACTGCAGAAAAACCACTAAAAGGAAGCTCTG
AATTTGTCACCTCTTATATGGATGCTGATTGGTATTTCGTTTCTCAAGAGAACTTAAATTTGTTCACCGCGAATCCGACA
AAATACGCGCCTCAATACGGTGGTTTTTGTGCTTGGGCAGTGGCTGAAAAAAATGACCGCGCGCCTGGTGACCCGAATCA
ATTTTCAATTGTAGATGGAAAGCTGTATTTAAATTATGACGCGGGTGTCAAAACCTTATGGGAAAAAGACATTCAAGGCT
TCATCACACAAGGCGATAAAAACTGA

Upstream 100 bases:

>100_bases
TTTTTCAGGCTCACCATGCCAAACAAAAAAGTATTTGGCCTATGATGTTCCTTTCCATTCATACAACAACACCCACTCAT
ACAGTTAATATTATAAGGTC

Downstream 100 bases:

>100_bases
CCCAAGCTACTAGAAAAGTAAGCGGTCACAATTAAAAAACACAGCCAACCAAAAATCATAAAAGGAAATAATGATGAAAG
AAAAATTACTAAAGTATGGC

Product: hypothetical protein

Products: NA

Alternate protein names: YHS Domain-Containing Protein; YHS Domain Family; Tat Pathway Signal Sequence Domain Protein

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MIMKKLLCLFMLIFSQSSFASDAIYTGFFSNKAIDGYDSVSYFTAEKPLKGSSEFVTSYMDADWYFVSQENLNLFTANPT
KYAPQYGGFCAWAVAEKNDRAPGDPNQFSIVDGKLYLNYDAGVKTLWEKDIQGFITQGDKN

Sequences:

>Translated_141_residues
MIMKKLLCLFMLIFSQSSFASDAIYTGFFSNKAIDGYDSVSYFTAEKPLKGSSEFVTSYMDADWYFVSQENLNLFTANPT
KYAPQYGGFCAWAVAEKNDRAPGDPNQFSIVDGKLYLNYDAGVKTLWEKDIQGFITQGDKN
>Mature_141_residues
MIMKKLLCLFMLIFSQSSFASDAIYTGFFSNKAIDGYDSVSYFTAEKPLKGSSEFVTSYMDADWYFVSQENLNLFTANPT
KYAPQYGGFCAWAVAEKNDRAPGDPNQFSIVDGKLYLNYDAGVKTLWEKDIQGFITQGDKN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15882; Mature: 15882

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMKKLLCLFMLIFSQSSFASDAIYTGFFSNKAIDGYDSVSYFTAEKPLKGSSEFVTSYM
CHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHC
DADWYFVSQENLNLFTANPTKYAPQYGGFCAWAVAEKNDRAPGDPNQFSIVDGKLYLNYD
CCCEEEEECCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCEEEEEEC
AGVKTLWEKDIQGFITQGDKN
CCHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MIMKKLLCLFMLIFSQSSFASDAIYTGFFSNKAIDGYDSVSYFTAEKPLKGSSEFVTSYM
CHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHC
DADWYFVSQENLNLFTANPTKYAPQYGGFCAWAVAEKNDRAPGDPNQFSIVDGKLYLNYD
CCCEEEEECCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCEEEEEEC
AGVKTLWEKDIQGFITQGDKN
CCHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA