Definition Geobacter bemidjiensis Bem chromosome, complete genome.
Accession NC_011146
Length 4,615,150

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The map label for this gene is 197119735

Identifier: 197119735

GI number: 197119735

Start: 3873329

End: 3876016

Strand: Direct

Name: 197119735

Synonym: Gbem_3371

Alternate gene names: NA

Gene position: 3873329-3876016 (Clockwise)

Preceding gene: 197119731

Following gene: 197119736

Centisome position: 83.93

GC content: 63.39

Gene sequence:

>2688_bases
ATGCAAGGCACGCTATGGAAAAAGTTTTCAACTTTCTTGATTGCCTCAACTGCTGCAGCCGCACTGTTTCTGGGCGGCTG
CGAAGGGGACAAGGGTGATCGGGGTGAACCTGGCAAGAACGCCACCTCATTCACCAATATAAGCTCCCTTACCCCGCAAC
AGCAGGCAAATCTCACCTTCGACCAGACCAACAGCACGGTTACCAGCGTCTCCATCAGCAGTCCGCCGGTCGTCAAGTTC
AAGATCCTCGACAGCAACGGCAACCCCGTGATCGGCATCGGCGCCAGGAACTCGACTGGGCAGCTGCAAAACCTCGGCTT
CACCCTCGCGAAACTCGTTCCCGGCACCAACGGCAGCCCGTCTCACTGGGTGAACTACTTAGTGACCACCGTTCCTGCCC
CGGGCTCCAGCACACCGGCTGCAGCCAGGCCACCCGAGCGCGACCGTGAGGGGACCTTGATAGACAACGGCGATGGCACC
TACCAGTACACCTTCGCCCGCGACATCACCCAGATCCAGACCCAGGTGAACGCCATGACCTTCACCGGCAACAACCGCAG
AAGCGACCTGGGCGATTTGACCTATCAGCCGAGCCTTACCCACCGCCTGGTGATCCAGTACGGCGGGACCATCCTGAACA
CCTCCCCGTCGATTCCCTTCAAAAATGCACTCAACATCGTCTACGATTTCATCCCGGCTACCGGCCAAGTGGTGACCTCC
TCGACCTCTAACGCACAGGAGCGCAACATCGTGTTCACCAAGTATTGCAACGAGTGTCACGGAAGCCCAGGCGATCCCAA
TAACCTCAACGACCTGGGCTTCGGCTTGGGCATCACCACGCCTCATTCCGGCCGCGTCGACACCCGCTACTGCGCGATCT
GCCATACGAGCCAGCGTGCCTACGGACACGCCATCTCCGTGGCCACCAACGGCGCCTTCACCGACGGCACTTTCGTCACG
GCCGAAACCACCACCGCGGACGTGAATACCGACGACGTGCAGGTGTTGGGCGAGTTCGTGACCATGGTGCACAAGATCCA
CATGGGGAACAGACTGACCGAAACCGGCTACAACTACGCCGGTGTCACGTTCAACACCATTGCCTACAGCCAGGATCCCG
CCCTTTGCCGCAAGTGCCACAGGGGCGACACGCCGCAGCAACTGGCGGTCACGCCGCAGGGTAACAACTGGAACACCATG
CCCAGCCGCAAGGCCTGCGGCTCCTGCCACGACAACGTCCACTTCTCGACCGGCCTAAACCACGACGGCAATCTGCCACA
GGCGAACGACACGGCCTGCACCGGCTGCCATACCCCGACGGCTATCCAGACTTCGCACGCAAGGGCGCTCGCCAGCCCAC
TCAACCCGCAGCCGATCGCAGGGCTGACCAACTTCGAATACCAGCTGCAGAGCGCGACCATCAACGGGACCAGCAACGAC
TTGACCATCGTCTTCCGCATCCTTGGCAATGGCACCCCCATCACGCTGGCCACAGCCGCGCCCGGCCTCACCGCGCCGCT
TGCCGGCTTCACCGGCAGCCCGTCCTTCCTGCTGGCCTACGCAAGCCCTCAGTTGGAGACCGGCACAGCAGTTCCGGCCG
ATTACAACAACCTCGGCAAAGCGGAGGCGCAACCTGCCTTGGTATCCATCGCCGCGCTGCTCAATACGACGACTAACGCA
GCTGTTGGCAGCATCGCTGGCCCGGACAGCAACGGCTTCTACACGGCGACCATCAAATCAGCGGCAGCCTTCCCGGTAGG
GGCGAGTATGCGCGCAGTCGGGATGCAGAGCTACTTCACCCAGACCGGTTTTGACGCCTCGATCGCCGGCCGCCACACCA
AGGCGGTCATCATACCTGTCACGGGCGACACAGCGCGCCGCACGGTAGTCGATCCCGACAAGTGCGCCAGGTGCCACGAG
TTCTTCGAAGCCCACGGCGGGCAGCGGGTGTACCAGACCCAGCTCTGCGTAACCTGCCATAACCCCAACCTGAGCACCAG
CGGCCGTGCCATCTCCGACGCCAAGCTCGCCGGCTTTGCCTTCACGCCGATCCAGCTCGGCATCCTTACCACCTGGGACC
CGGCCTTCAACAAGGCCACCCCTGGATACGCCCTCAGCTTCGCTGAGTTCTCCAACAACTTCAAGGACTTGATCCACGGC
ATCCATGCCGGGAGCGCGGCAGAGGGCGGTATCCGCACCAACCCCATCCGCGACGTACGTAACGGCCCGGGCACCAACAT
CACCCTCATCGCCGGCGAAGAGATCACCTTCCCGAATCTGCTCTCCAACTGCGACGCCTGCCACCTGAGCGCCCCCGCCG
GCACCAACCGCCAGACCTACAAGGCGAACCTGCCGCCCAACGTGCTGCCGTCGACCCAGGTGACTAGGAACGCCGCCGTC
GTGGCCGGCGCGACCACCGCCAACATCACCGCGGCACGCACCACGGTCCCCAACCCCGAGGACCTGGTGGTGGCCCCCAT
CACCGCCTCCTGCGTCAGCTGCCACGACAGCGCACTGGCCAAGGCGCACATGCAGGCCAACGGCGCGCAGCTTGGCGCCG
CCCTGGCAGGGCCGTCCTACACCAACATGGGCGTCCCGCGCTCGACCCTGCCGTCCGCAACCGAGCAATGCGCGCTCTGC
CACGGCGAAGGGCGGGTAGCCGACGTCGTAGTGGTTCACCAGAGGTAA

Upstream 100 bases:

>100_bases
AGGTCCCCCCCTGAAGCAGCGCTCGCTACGGCTCTCTCTTCCCAGTTCAGCAGCAGCCTTAATGGCAACACAGGCATCTG
ACCAGAGACAAGGAGGATTT

Downstream 100 bases:

>100_bases
CAATAAGCGCCACAACCAGCCGGGGCACGATAACCGTGCCCCGGCCCATCGCTCCTCGAAAACACCTGCAGAACCGGGGG
CCCATCTGCCCCCGGTTTTA

Product: lipoprotein cytochrome c

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 895; Mature: 895

Protein sequence:

>895_residues
MQGTLWKKFSTFLIASTAAAALFLGGCEGDKGDRGEPGKNATSFTNISSLTPQQQANLTFDQTNSTVTSVSISSPPVVKF
KILDSNGNPVIGIGARNSTGQLQNLGFTLAKLVPGTNGSPSHWVNYLVTTVPAPGSSTPAAARPPERDREGTLIDNGDGT
YQYTFARDITQIQTQVNAMTFTGNNRRSDLGDLTYQPSLTHRLVIQYGGTILNTSPSIPFKNALNIVYDFIPATGQVVTS
STSNAQERNIVFTKYCNECHGSPGDPNNLNDLGFGLGITTPHSGRVDTRYCAICHTSQRAYGHAISVATNGAFTDGTFVT
AETTTADVNTDDVQVLGEFVTMVHKIHMGNRLTETGYNYAGVTFNTIAYSQDPALCRKCHRGDTPQQLAVTPQGNNWNTM
PSRKACGSCHDNVHFSTGLNHDGNLPQANDTACTGCHTPTAIQTSHARALASPLNPQPIAGLTNFEYQLQSATINGTSND
LTIVFRILGNGTPITLATAAPGLTAPLAGFTGSPSFLLAYASPQLETGTAVPADYNNLGKAEAQPALVSIAALLNTTTNA
AVGSIAGPDSNGFYTATIKSAAAFPVGASMRAVGMQSYFTQTGFDASIAGRHTKAVIIPVTGDTARRTVVDPDKCARCHE
FFEAHGGQRVYQTQLCVTCHNPNLSTSGRAISDAKLAGFAFTPIQLGILTTWDPAFNKATPGYALSFAEFSNNFKDLIHG
IHAGSAAEGGIRTNPIRDVRNGPGTNITLIAGEEITFPNLLSNCDACHLSAPAGTNRQTYKANLPPNVLPSTQVTRNAAV
VAGATTANITAARTTVPNPEDLVVAPITASCVSCHDSALAKAHMQANGAQLGAALAGPSYTNMGVPRSTLPSATEQCALC
HGEGRVADVVVVHQR

Sequences:

>Translated_895_residues
MQGTLWKKFSTFLIASTAAAALFLGGCEGDKGDRGEPGKNATSFTNISSLTPQQQANLTFDQTNSTVTSVSISSPPVVKF
KILDSNGNPVIGIGARNSTGQLQNLGFTLAKLVPGTNGSPSHWVNYLVTTVPAPGSSTPAAARPPERDREGTLIDNGDGT
YQYTFARDITQIQTQVNAMTFTGNNRRSDLGDLTYQPSLTHRLVIQYGGTILNTSPSIPFKNALNIVYDFIPATGQVVTS
STSNAQERNIVFTKYCNECHGSPGDPNNLNDLGFGLGITTPHSGRVDTRYCAICHTSQRAYGHAISVATNGAFTDGTFVT
AETTTADVNTDDVQVLGEFVTMVHKIHMGNRLTETGYNYAGVTFNTIAYSQDPALCRKCHRGDTPQQLAVTPQGNNWNTM
PSRKACGSCHDNVHFSTGLNHDGNLPQANDTACTGCHTPTAIQTSHARALASPLNPQPIAGLTNFEYQLQSATINGTSND
LTIVFRILGNGTPITLATAAPGLTAPLAGFTGSPSFLLAYASPQLETGTAVPADYNNLGKAEAQPALVSIAALLNTTTNA
AVGSIAGPDSNGFYTATIKSAAAFPVGASMRAVGMQSYFTQTGFDASIAGRHTKAVIIPVTGDTARRTVVDPDKCARCHE
FFEAHGGQRVYQTQLCVTCHNPNLSTSGRAISDAKLAGFAFTPIQLGILTTWDPAFNKATPGYALSFAEFSNNFKDLIHG
IHAGSAAEGGIRTNPIRDVRNGPGTNITLIAGEEITFPNLLSNCDACHLSAPAGTNRQTYKANLPPNVLPSTQVTRNAAV
VAGATTANITAARTTVPNPEDLVVAPITASCVSCHDSALAKAHMQANGAQLGAALAGPSYTNMGVPRSTLPSATEQCALC
HGEGRVADVVVVHQR
>Mature_895_residues
MQGTLWKKFSTFLIASTAAAALFLGGCEGDKGDRGEPGKNATSFTNISSLTPQQQANLTFDQTNSTVTSVSISSPPVVKF
KILDSNGNPVIGIGARNSTGQLQNLGFTLAKLVPGTNGSPSHWVNYLVTTVPAPGSSTPAAARPPERDREGTLIDNGDGT
YQYTFARDITQIQTQVNAMTFTGNNRRSDLGDLTYQPSLTHRLVIQYGGTILNTSPSIPFKNALNIVYDFIPATGQVVTS
STSNAQERNIVFTKYCNECHGSPGDPNNLNDLGFGLGITTPHSGRVDTRYCAICHTSQRAYGHAISVATNGAFTDGTFVT
AETTTADVNTDDVQVLGEFVTMVHKIHMGNRLTETGYNYAGVTFNTIAYSQDPALCRKCHRGDTPQQLAVTPQGNNWNTM
PSRKACGSCHDNVHFSTGLNHDGNLPQANDTACTGCHTPTAIQTSHARALASPLNPQPIAGLTNFEYQLQSATINGTSND
LTIVFRILGNGTPITLATAAPGLTAPLAGFTGSPSFLLAYASPQLETGTAVPADYNNLGKAEAQPALVSIAALLNTTTNA
AVGSIAGPDSNGFYTATIKSAAAFPVGASMRAVGMQSYFTQTGFDASIAGRHTKAVIIPVTGDTARRTVVDPDKCARCHE
FFEAHGGQRVYQTQLCVTCHNPNLSTSGRAISDAKLAGFAFTPIQLGILTTWDPAFNKATPGYALSFAEFSNNFKDLIHG
IHAGSAAEGGIRTNPIRDVRNGPGTNITLIAGEEITFPNLLSNCDACHLSAPAGTNRQTYKANLPPNVLPSTQVTRNAAV
VAGATTANITAARTTVPNPEDLVVAPITASCVSCHDSALAKAHMQANGAQLGAALAGPSYTNMGVPRSTLPSATEQCALC
HGEGRVADVVVVHQR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 93998; Mature: 93998

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51008 MULTIHEME_CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGTLWKKFSTFLIASTAAAALFLGGCEGDKGDRGEPGKNATSFTNISSLTPQQQANLTF
CCCCHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEE
DQTNSTVTSVSISSPPVVKFKILDSNGNPVIGIGARNSTGQLQNLGFTLAKLVPGTNGSP
ECCCCEEEEEEECCCCEEEEEEECCCCCEEEEECCCCCCCCHHHCCEEEEHHCCCCCCCH
SHWVNYLVTTVPAPGSSTPAAARPPERDREGTLIDNGDGTYQYTFARDITQIQTQVNAMT
HHHEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEHHHHHHHHHHHEEEEE
FTGNNRRSDLGDLTYQPSLTHRLVIQYGGTILNTSPSIPFKNALNIVYDFIPATGQVVTS
EECCCCCCCCCCEEECCCCCEEEEEEECCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEC
STSNAQERNIVFTKYCNECHGSPGDPNNLNDLGFGLGITTPHSGRVDTRYCAICHTSQRA
CCCCCCCCCEEEEEHHHHHCCCCCCCCCCCHHCCCCEECCCCCCCCCCEEEEEEECCCCC
YGHAISVATNGAFTDGTFVTAETTTADVNTDDVQVLGEFVTMVHKIHMGNRLTETGYNYA
CCEEEEEEECCCCCCCEEEEEECEECCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCC
GVTFNTIAYSQDPALCRKCHRGDTPQQLAVTPQGNNWNTMPSRKACGSCHDNVHFSTGLN
CEEEEEEEECCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHCCCCCCCEEEECCCC
HDGNLPQANDTACTGCHTPTAIQTSHARALASPLNPQPIAGLTNFEYQLQSATINGTSND
CCCCCCCCCCCCCCCCCCCCEEECHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCC
LTIVFRILGNGTPITLATAAPGLTAPLAGFTGSPSFLLAYASPQLETGTAVPADYNNLGK
EEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
AEAQPALVSIAALLNTTTNAAVGSIAGPDSNGFYTATIKSAAAFPVGASMRAVGMQSYFT
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHH
QTGFDASIAGRHTKAVIIPVTGDTARRTVVDPDKCARCHEFFEAHGGQRVYQTQLCVTCH
HCCCCCEECCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEC
NPNLSTSGRAISDAKLAGFAFTPIQLGILTTWDPAFNKATPGYALSFAEFSNNFKDLIHG
CCCCCCCCCEECCCEECCEEECCEEEEEEEECCCCCCCCCCCCEEEHHHHHCCHHHHHHH
IHAGSAAEGGIRTNPIRDVRNGPGTNITLIAGEEITFPNLLSNCDACHLSAPAGTNRQTY
HCCCCCCCCCCCCCCCHHHCCCCCCEEEEEECCCCCCHHHHCCCCCEEEECCCCCCCCEE
KANLPPNVLPSTQVTRNAAVVAGATTANITAARTTVPNPEDLVVAPITASCVSCHDSALA
ECCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHH
KAHMQANGAQLGAALAGPSYTNMGVPRSTLPSATEQCALCHGEGRVADVVVVHQR
HHHHHCCCHHHCCEECCCCCCCCCCCCCCCCCCHHHHEEECCCCCEEEEEEEECC
>Mature Secondary Structure
MQGTLWKKFSTFLIASTAAAALFLGGCEGDKGDRGEPGKNATSFTNISSLTPQQQANLTF
CCCCHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEE
DQTNSTVTSVSISSPPVVKFKILDSNGNPVIGIGARNSTGQLQNLGFTLAKLVPGTNGSP
ECCCCEEEEEEECCCCEEEEEEECCCCCEEEEECCCCCCCCHHHCCEEEEHHCCCCCCCH
SHWVNYLVTTVPAPGSSTPAAARPPERDREGTLIDNGDGTYQYTFARDITQIQTQVNAMT
HHHEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEHHHHHHHHHHHEEEEE
FTGNNRRSDLGDLTYQPSLTHRLVIQYGGTILNTSPSIPFKNALNIVYDFIPATGQVVTS
EECCCCCCCCCCEEECCCCCEEEEEEECCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEC
STSNAQERNIVFTKYCNECHGSPGDPNNLNDLGFGLGITTPHSGRVDTRYCAICHTSQRA
CCCCCCCCCEEEEEHHHHHCCCCCCCCCCCHHCCCCEECCCCCCCCCCEEEEEEECCCCC
YGHAISVATNGAFTDGTFVTAETTTADVNTDDVQVLGEFVTMVHKIHMGNRLTETGYNYA
CCEEEEEEECCCCCCCEEEEEECEECCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCC
GVTFNTIAYSQDPALCRKCHRGDTPQQLAVTPQGNNWNTMPSRKACGSCHDNVHFSTGLN
CEEEEEEEECCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHCCCCCCCEEEECCCC
HDGNLPQANDTACTGCHTPTAIQTSHARALASPLNPQPIAGLTNFEYQLQSATINGTSND
CCCCCCCCCCCCCCCCCCCCEEECHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCC
LTIVFRILGNGTPITLATAAPGLTAPLAGFTGSPSFLLAYASPQLETGTAVPADYNNLGK
EEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
AEAQPALVSIAALLNTTTNAAVGSIAGPDSNGFYTATIKSAAAFPVGASMRAVGMQSYFT
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHH
QTGFDASIAGRHTKAVIIPVTGDTARRTVVDPDKCARCHEFFEAHGGQRVYQTQLCVTCH
HCCCCCEECCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEC
NPNLSTSGRAISDAKLAGFAFTPIQLGILTTWDPAFNKATPGYALSFAEFSNNFKDLIHG
CCCCCCCCCEECCCEECCEEECCEEEEEEEECCCCCCCCCCCCEEEHHHHHCCHHHHHHH
IHAGSAAEGGIRTNPIRDVRNGPGTNITLIAGEEITFPNLLSNCDACHLSAPAGTNRQTY
HCCCCCCCCCCCCCCCHHHCCCCCCEEEEEECCCCCCHHHHCCCCCEEEECCCCCCCCEE
KANLPPNVLPSTQVTRNAAVVAGATTANITAARTTVPNPEDLVVAPITASCVSCHDSALA
ECCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHH
KAHMQANGAQLGAALAGPSYTNMGVPRSTLPSATEQCALCHGEGRVADVVVVHQR
HHHHHCCCHHHCCEECCCCCCCCCCCCCCCCCCHHHHEEECCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA