| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is prt [H]
Identifier: 197117250
GI number: 197117250
Start: 1013787
End: 1014698
Strand: Direct
Name: prt [H]
Synonym: Gbem_0858
Alternate gene names: 197117250
Gene position: 1013787-1014698 (Clockwise)
Preceding gene: 197117249
Following gene: 197117251
Centisome position: 21.97
GC content: 59.54
Gene sequence:
>912_bases ATGAAGATCCTCGTCACCGGTGCGACCGGTTTCCTGGGAAGCCGTCTGGTAGAAGCCCTGCTCCGACAGGGGCACCAGGT CATCGTCTTGAAGCGCAGTTTTTCCGATACGCGGCGGCTGAAGGGGATGCTCTCTTCGATTGCCCTTTACGATTTGGACC GGTCCCCCCTGGCCGACCCGTTCCGGGAGCACGGCACGCTCGACGCGGTGCTGCATGCCGCCACCTGCTACGGCCGCCGG GGCGAGAGTTCCAGCGAGATCTGCGAAGCAAACGTGGCCTTTCCGTTACGTCTTCTGGAAGCCGCATGCAGTCATGGAAC CGCTCGGTTTATCAATACCGATACCAGCCTGTACAGGGGCATCAACGCCTACGCCCTGTCCAAGAAGCAGTTTTCGGAGT GGGGGAAGCTTGCGGCGGAGAGCGGACGGATCCGTTTCGTGAACGTGGTGCTCGAGCATTTTTATGGGCCAGGGGACGAT GACGGCAAATTCGTCTCCCATGTCATCAAGAGCTGTCGCCAGGGAGTGCCGGAACTGAAGCTCACCAAGGGGGAACAGGA ACGGGATTTCATCTACATCGATGACGTCGTTTCCGCTTATCTACTCCTGCTTCAGGAGACGGGCTGCTCTGAGCCGGCAT GCGCTGACTATCCACTGGGATCCGGGCAAACAGTATCACTGCGCGCCCTGGTGGAGATGATCGGCCGGCTGACCGGATCG ACGACGAAACTGAACTTCGGCGCGCTCCCGTACCGGCAAAACGAGGCCATGCACTCAGTTGCGGACATCGTTGCACTTGA GCGGCTTGGCTGGAAGGCAACTGTGGATCTCTCGGCAGGGCTTGCGCGCACCGTAGCCTACCAGCAACAGGAAGACAAAA ACGGCAGTGAAGCTGAAGGGAGCATGTCATGA
Upstream 100 bases:
>100_bases ACCGGATCATGAACGACACCTTATGGATCGGCGTCTATCCGGGGATGACGGAAGCCATGCTCGCGCAGATGATCGAGAAA ATCAGGGAAGTTGCTGGGGC
Downstream 100 bases:
>100_bases AATTACTGATAACCGGCGGGTGCGGTTTTCTCGGAAGCAATTTGGCAGCACACGCGCTCAAGCGCGGGGACGAACTCGTC GTCTTTGACAGCCTGTACCG
Product: CDP-paratose synthase
Products: UDPglucoseal [C]
Alternate protein names: NA
Number of amino acids: Translated: 303; Mature: 303
Protein sequence:
>303_residues MKILVTGATGFLGSRLVEALLRQGHQVIVLKRSFSDTRRLKGMLSSIALYDLDRSPLADPFREHGTLDAVLHAATCYGRR GESSSEICEANVAFPLRLLEAACSHGTARFINTDTSLYRGINAYALSKKQFSEWGKLAAESGRIRFVNVVLEHFYGPGDD DGKFVSHVIKSCRQGVPELKLTKGEQERDFIYIDDVVSAYLLLLQETGCSEPACADYPLGSGQTVSLRALVEMIGRLTGS TTKLNFGALPYRQNEAMHSVADIVALERLGWKATVDLSAGLARTVAYQQQEDKNGSEAEGSMS
Sequences:
>Translated_303_residues MKILVTGATGFLGSRLVEALLRQGHQVIVLKRSFSDTRRLKGMLSSIALYDLDRSPLADPFREHGTLDAVLHAATCYGRR GESSSEICEANVAFPLRLLEAACSHGTARFINTDTSLYRGINAYALSKKQFSEWGKLAAESGRIRFVNVVLEHFYGPGDD DGKFVSHVIKSCRQGVPELKLTKGEQERDFIYIDDVVSAYLLLLQETGCSEPACADYPLGSGQTVSLRALVEMIGRLTGS TTKLNFGALPYRQNEAMHSVADIVALERLGWKATVDLSAGLARTVAYQQQEDKNGSEAEGSMS >Mature_303_residues MKILVTGATGFLGSRLVEALLRQGHQVIVLKRSFSDTRRLKGMLSSIALYDLDRSPLADPFREHGTLDAVLHAATCYGRR GESSSEICEANVAFPLRLLEAACSHGTARFINTDTSLYRGINAYALSKKQFSEWGKLAAESGRIRFVNVVLEHFYGPGDD DGKFVSHVIKSCRQGVPELKLTKGEQERDFIYIDDVVSAYLLLLQETGCSEPACADYPLGSGQTVSLRALVEMIGRLTGS TTKLNFGALPYRQNEAMHSVADIVALERLGWKATVDLSAGLARTVAYQQQEDKNGSEAEGSMS
Specific function: Galactose metabolism; third step. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001509 - InterPro: IPR016040 [H]
Pfam domain/function: PF01370 Epimerase [H]
EC number: 5.1.3.2 [C]
Molecular weight: Translated: 33129; Mature: 33129
Theoretical pI: Translated: 6.87; Mature: 6.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKILVTGATGFLGSRLVEALLRQGHQVIVLKRSFSDTRRLKGMLSSIALYDLDRSPLADP CEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCH FREHGTLDAVLHAATCYGRRGESSSEICEANVAFPLRLLEAACSHGTARFINTDTSLYRG HHHCCCHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCEEEEECCHHHHHC INAYALSKKQFSEWGKLAAESGRIRFVNVVLEHFYGPGDDDGKFVSHVIKSCRQGVPELK CHHHHHCHHHHHHHHHHHHCCCCEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEE LTKGEQERDFIYIDDVVSAYLLLLQETGCSEPACADYPLGSGQTVSLRALVEMIGRLTGS ECCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCC TTKLNFGALPYRQNEAMHSVADIVALERLGWKATVDLSAGLARTVAYQQQEDKNGSEAEG CEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCC SMS CCC >Mature Secondary Structure MKILVTGATGFLGSRLVEALLRQGHQVIVLKRSFSDTRRLKGMLSSIALYDLDRSPLADP CEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCH FREHGTLDAVLHAATCYGRRGESSSEICEANVAFPLRLLEAACSHGTARFINTDTSLYRG HHHCCCHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCEEEEECCHHHHHC INAYALSKKQFSEWGKLAAESGRIRFVNVVLEHFYGPGDDDGKFVSHVIKSCRQGVPELK CHHHHHCHHHHHHHHHHHHCCCCEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEE LTKGEQERDFIYIDDVVSAYLLLLQETGCSEPACADYPLGSGQTVSLRALVEMIGRLTGS ECCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCC TTKLNFGALPYRQNEAMHSVADIVALERLGWKATVDLSAGLARTVAYQQQEDKNGSEAEG CEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCC SMS CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NAD+ [C]
Metal ions: NA
Kcat value (1/min): 57600 [C]
Specific activity: 233.3
Km value (mM): 0.256 {UDPgalactose}} 0.225 {UDPgalactose}} 0.2 {UDPgalactose}} 0.18 {UDPgalactose}} 0.16 {UDPgalactose}} 0.14 {UDPgalactose}} 0.048 {UDPgalactose}} 0.026 {UDPgalactose}} [C]
Substrates: UDPglucose [C]
Specific reaction: UDPglucose <==> UDPglucoseal [C]
General reaction: Epimerization (specificity for carbon forming a hexosulose) [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1379320 [H]