Definition | Natranaerobius thermophilus JW/NM-WN-LF, complete genome. |
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Accession | NC_010718 |
Length | 3,165,557 |
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The map label for this gene is pdxS
Identifier: 188584654
GI number: 188584654
Start: 21504
End: 22391
Strand: Direct
Name: pdxS
Synonym: Nther_0012
Alternate gene names: 188584654
Gene position: 21504-22391 (Clockwise)
Preceding gene: 188584653
Following gene: 188584655
Centisome position: 0.68
GC content: 40.32
Gene sequence:
>888_bases ATGAATATAGAAAAAGGTACAGAAACAGTAAAAAAAGGTATGGCCCAAATGCAAAAAGGCGGAGTTATCATGGATGTTAC AACTCCCGAACAGGCTAAAATAGCTGAAAAAGCAGGAGCTGTAGCAGTGATGGCTTTAGAAAAAGTGCCTGCAGATATAA GAGCTGGTGGTGGAGTAGCACGAATGGCAGATCCTGAGGTTATTAAAAAGATCATGGATGCTGTAAGTATCCCAGTTATG GCCAAGGCACGAATTGGTCATTTTGTGGAAGCTCGTATTTTGGAAAATTTAGGCGTTGATTATATAGACGAAAGTGAAGT GCTTACCCCAGCCGATGAATATTATCACATTGATAAAAACAAATTCACTGTCCCTTTTGTATGTGGTGCTAGGAATTTAG GAGAAGCCTTACGCCGTGTTGGAGAAGGCGCTTCTATGATGAGAACTAAAGGGGAAGCAGGAACGGGTAATGTGGTAGAG GCTGTACGTCATATAAGAACTGTTATGGATGGTATCAGAAAAGTTCAAAATCTTCCTGATGATGAGTTAATGACTGAAGC TAAGAATATTGGAGCACCTTATGACCTTATTAAACAAGTTAAAGAAGAGGGAAGATTGCCTGTAGTTAACTTCGCTGCTG GTGGAGTAGCTACACCTGCCGATGCAGCTTTGATGATGCAATTAGGTGCCGATGGAGTTTTTGTAGGTTCAGGTATATTT AAATCAGGTGATCCTGAAAAAAGAGCAAAATCTATTGTAGAAGCAACATTAAATTACGATAATTATGATGTGTTGGCTGA TGTTTCTTCAGGATTGGGTGAAGCGATGGTAGGAATTAATGTATCCGATCTGGAAGAACAGGAAAGGATGCAAAATCGAG GCTGGTAA
Upstream 100 bases:
>100_bases TGATTTTTCGGAATCATAACTAAAATAACTTTATATCAATCTTGTTAATGACTAACTATTGTAGTAAAATCAATGTTGAA TAGAAAAGGAGGGATTATTA
Downstream 100 bases:
>100_bases ATTGATACAGTGTATAAGAACTAGAAGATTGATAGGAAAATTTTATAAAAATTAGATTAATTTGTATACAAGGTGCTATT ACAAAACACATGGACATGCA
Product: pyridoxal biosynthesis lyase PdxS
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 295; Mature: 295
Protein sequence:
>295_residues MNIEKGTETVKKGMAQMQKGGVIMDVTTPEQAKIAEKAGAVAVMALEKVPADIRAGGGVARMADPEVIKKIMDAVSIPVM AKARIGHFVEARILENLGVDYIDESEVLTPADEYYHIDKNKFTVPFVCGARNLGEALRRVGEGASMMRTKGEAGTGNVVE AVRHIRTVMDGIRKVQNLPDDELMTEAKNIGAPYDLIKQVKEEGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIF KSGDPEKRAKSIVEATLNYDNYDVLADVSSGLGEAMVGINVSDLEEQERMQNRGW
Sequences:
>Translated_295_residues MNIEKGTETVKKGMAQMQKGGVIMDVTTPEQAKIAEKAGAVAVMALEKVPADIRAGGGVARMADPEVIKKIMDAVSIPVM AKARIGHFVEARILENLGVDYIDESEVLTPADEYYHIDKNKFTVPFVCGARNLGEALRRVGEGASMMRTKGEAGTGNVVE AVRHIRTVMDGIRKVQNLPDDELMTEAKNIGAPYDLIKQVKEEGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIF KSGDPEKRAKSIVEATLNYDNYDVLADVSSGLGEAMVGINVSDLEEQERMQNRGW >Mature_295_residues MNIEKGTETVKKGMAQMQKGGVIMDVTTPEQAKIAEKAGAVAVMALEKVPADIRAGGGVARMADPEVIKKIMDAVSIPVM AKARIGHFVEARILENLGVDYIDESEVLTPADEYYHIDKNKFTVPFVCGARNLGEALRRVGEGASMMRTKGEAGTGNVVE AVRHIRTVMDGIRKVQNLPDDELMTEAKNIGAPYDLIKQVKEEGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIF KSGDPEKRAKSIVEATLNYDNYDVLADVSSGLGEAMVGINVSDLEEQERMQNRGW
Specific function: Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring
COG id: COG0214
COG function: function code H; Pyridoxine biosynthesis enzyme
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pdxS/SNZ family
Homologues:
Organism=Saccharomyces cerevisiae, GI6323743, Length=290, Percent_Identity=63.1034482758621, Blast_Score=372, Evalue=1e-104, Organism=Saccharomyces cerevisiae, GI6321049, Length=293, Percent_Identity=63.8225255972696, Blast_Score=367, Evalue=1e-102, Organism=Saccharomyces cerevisiae, GI6323996, Length=293, Percent_Identity=63.481228668942, Blast_Score=366, Evalue=1e-102,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): PDXS_NATTJ (B2A2Z7)
Other databases:
- EMBL: CP001034 - RefSeq: YP_001916199.1 - ProteinModelPortal: B2A2Z7 - SMR: B2A2Z7 - GeneID: 6314409 - GenomeReviews: CP001034_GR - KEGG: nth:Nther_0012 - HOGENOM: HBG292342 - OMA: ARMSDPD - ProtClustDB: PRK04180 - HAMAP: MF_01824 - InterPro: IPR013785 - InterPro: IPR011060 - InterPro: IPR001852 - Gene3D: G3DSA:3.20.20.70 - PIRSF: PIRSF029271 - TIGRFAMs: TIGR00343
Pfam domain/function: PF01680 SOR_SNZ; SSF51366 RibP_bind_barrel
EC number: NA
Molecular weight: Translated: 31666; Mature: 31666
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: PS01235 PDXS_SNZ_1; PS51129 PDXS_SNZ_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 5.4 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 5.4 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIEKGTETVKKGMAQMQKGGVIMDVTTPEQAKIAEKAGAVAVMALEKVPADIRAGGGVA CCCCHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHCCEEEEHHHHCCCHHHCCCCCC RMADPEVIKKIMDAVSIPVMAKARIGHFVEARILENLGVDYIDESEVLTPADEYYHIDKN CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHEEECCC KFTVPFVCGARNLGEALRRVGEGASMMRTKGEAGTGNVVEAVRHIRTVMDGIRKVQNLPD CEEEEEECCCHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC DELMTEAKNIGAPYDLIKQVKEEGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIF HHHHHHHHHCCCCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEECCCCC KSGDPEKRAKSIVEATLNYDNYDVLADVSSGLGEAMVGINVSDLEEQERMQNRGW CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHCCCHHHHHHHHHHHHCCC >Mature Secondary Structure MNIEKGTETVKKGMAQMQKGGVIMDVTTPEQAKIAEKAGAVAVMALEKVPADIRAGGGVA CCCCHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHCCEEEEHHHHCCCHHHCCCCCC RMADPEVIKKIMDAVSIPVMAKARIGHFVEARILENLGVDYIDESEVLTPADEYYHIDKN CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHEEECCC KFTVPFVCGARNLGEALRRVGEGASMMRTKGEAGTGNVVEAVRHIRTVMDGIRKVQNLPD CEEEEEECCCHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC DELMTEAKNIGAPYDLIKQVKEEGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIF HHHHHHHHHCCCCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEECCCCC KSGDPEKRAKSIVEATLNYDNYDVLADVSSGLGEAMVGINVSDLEEQERMQNRGW CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA