Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is glgB [H]
Identifier: 187736238
GI number: 187736238
Start: 2132696
End: 2134732
Strand: Direct
Name: glgB [H]
Synonym: Amuc_1751
Alternate gene names: 187736238
Gene position: 2132696-2134732 (Clockwise)
Preceding gene: 187736237
Following gene: 187736246
Centisome position: 80.05
GC content: 59.94
Gene sequence:
>2037_bases ATGAGAAGACCCCCGATACCCGGCTTGGTGATGGCGGACGGATGGCTCCAGCCGTATTCCCGCCAGATACGCGACCGCCA GCGTCTGTTTGACCTGAAAATGAAGAGGATCAATCAGCGCGCCGGCTCTCTGGAGGAATACGCGCGCGGATACCGCTATT ACGGTTTCAACAGAGACGCGGAGACGGGGGCGTGGACATACCGGGAATGGGCTCCCGCCGCCCGCAGGGTGTCCCTGATT GGGGATTTTAACGGCTGGAACCGGGAGAGCCACCCGCTGGAGCGGAATGAGCGCGGCGTGTGGGAAATTACGCTGCCGCC TGATGCGCTGGCCCACGGGCAGAAGGTGAAGGTGCACGTGGTCGGTGCGGACGGCACGGGCAGAGATCGCATTCCCGCAT GGATTACCAGGACCGTCCAGGATCCGACCACTTATGATTTTGCCGGGGAGATCTGGATGCCGGAACACCCCTATGAATGG CGGAATAACGGTTTTGATCCCTCCCGGGTGGAAGTTCCGTTCGTGTATGAAGCGCATGTAGGCATGGGCGGGGAAGAAGG GCGCGTGCATACGTACCGCGAGTTTGCGGACGAGGTTCTCCCCCGGATCGCCAGGCTGGGTTACAATACCGTCCAGCTGA TGGCGATCCAGGAGCACCCCTATTACGGTTCCTTCGGCTACCACGTTTCTTCCTTTTTCGCCCCTTCCTCCCGTTTCGGC GAGCCGGAGGACCTGAAGTACCTGATAGACCAGGCGCACGGCCTGGGCATCGCCGTGCTGCTGGACGTGGTGCATTCCCA CGCCGTGAAGAACGAGGCGGAAGGGCTGAACAATTTTGACGGTTCCGGAGGCATGTATTTCCTGCCCGGGGAGCGCGGCC GCCATCCGGACTGGGATTCCTGTTGTTTTGATTATGGCCGGGACGAGGTGATTGAATTCCTCCTGTCCAATGTCCGCTGG TGGCTGGAAGAGTTCCGTTTTGACGGCTTCCGTTTTGACGGCGTGACATCTATGCTGTATTTCCACCGCGGGCATGAGCC GTTCGGGGATTTGGGCGCCTACTTCGGCTCTTCCGTGGATCTGGATGCCGTGGCTTATCTGCAGCTGGCCGCCACGCTGA TTCAGCGGGTGAAGCCGGGCGCCATAGCGATTGCTGAGGACATGTCCGGCATGCCGGGATTGTGCCGCCCGGTGGACGAA GGGGGGATTGGTTTTTCCCACCGTCTGGCCATGGGCATTCCCGATTACTGGATTAAGCTGCTCAAGGAGAAAAAGGATGA GGAATGGAGCATGGGCGATATGTGGCACACGCTGACCAACAGGCGCTACGGCGAGCCGCATGTGGCCTATTGCGAGAGCC ATGACCAGGCCCTGGTGGGGGACAAGACTCTGGCGTTCCGCCTGATGGATGCGGAAATGTACTGGAAAATGGCCGTGGAC CAGCAGAGCCTCATTATTGACCGCGGCATGGCGCTGCACAAGATGATCCGCCTGGTGACGTTGGCTACCGGGGGGGAAGG CTGGCTGAATTTCATGGGCAACGAATTCGGGCATCCGGAATGGATTGATTTTCCGCGCGAAGGCAACGGCTGGTCTTACG AATACTGCCGCCGCCAGTGGTCCCTGGTGGACAATCCTTCCCTCAGGTTCAAGTTCCTGAATGCCTTTGACCAGGCGATG GTCCGCCTGGCGCAGGAAGCCCGCCTGCTGAATAATCCGCCGCCTTTCCCGCTTAATATTGACGAGACCAACCATGTCAT GGCATTCCACCGCGGCGGTCTGTTGTTTGTGTTCAACTGGTCCGGAGACAGGGCTATCATGGATTACATGCTGCCCGTTC CCCAGAAGGGGGAATGGCGGGTAGTGCTGGATACGGACAACGCCCGTTTCGGCGGTTTCGGGAGGCAGGATGTTTCCATG CCGCATTTTACGGATGGGGAGGGGAATCTTTCCCTGTACCTGCTGCCGCGTACGGCCCTGGTCCTGAAGAGGGTAGGTTC CGCCGTCATGGCCCGCCACCCGGGGCGGGAGGATTAG
Upstream 100 bases:
>100_bases CCCGGGCGCGATTAAAGGGCCGCGCCCTTTTCTTCCCCCGCAGGGAGAAGCCCTTCTTTCTTCCTTGACCCTGCTGATTG AGGAGGGGTATCATCAGATA
Downstream 100 bases:
>100_bases CGTGCAATTCCAAAAACGGACGGTTTACTTATCCGTTCGTGAAAGGGAGCGTAGTGCGGGGCTGCGTACGGAACGCGGGA TGGATATGCGCTGTTACTCC
Product: glycoside hydrolase family 13 domain protein
Products: NA
Alternate protein names: 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase; Glycogen-branching enzyme; BE [H]
Number of amino acids: Translated: 678; Mature: 678
Protein sequence:
>678_residues MRRPPIPGLVMADGWLQPYSRQIRDRQRLFDLKMKRINQRAGSLEEYARGYRYYGFNRDAETGAWTYREWAPAARRVSLI GDFNGWNRESHPLERNERGVWEITLPPDALAHGQKVKVHVVGADGTGRDRIPAWITRTVQDPTTYDFAGEIWMPEHPYEW RNNGFDPSRVEVPFVYEAHVGMGGEEGRVHTYREFADEVLPRIARLGYNTVQLMAIQEHPYYGSFGYHVSSFFAPSSRFG EPEDLKYLIDQAHGLGIAVLLDVVHSHAVKNEAEGLNNFDGSGGMYFLPGERGRHPDWDSCCFDYGRDEVIEFLLSNVRW WLEEFRFDGFRFDGVTSMLYFHRGHEPFGDLGAYFGSSVDLDAVAYLQLAATLIQRVKPGAIAIAEDMSGMPGLCRPVDE GGIGFSHRLAMGIPDYWIKLLKEKKDEEWSMGDMWHTLTNRRYGEPHVAYCESHDQALVGDKTLAFRLMDAEMYWKMAVD QQSLIIDRGMALHKMIRLVTLATGGEGWLNFMGNEFGHPEWIDFPREGNGWSYEYCRRQWSLVDNPSLRFKFLNAFDQAM VRLAQEARLLNNPPPFPLNIDETNHVMAFHRGGLLFVFNWSGDRAIMDYMLPVPQKGEWRVVLDTDNARFGGFGRQDVSM PHFTDGEGNLSLYLLPRTALVLKRVGSAVMARHPGRED
Sequences:
>Translated_678_residues MRRPPIPGLVMADGWLQPYSRQIRDRQRLFDLKMKRINQRAGSLEEYARGYRYYGFNRDAETGAWTYREWAPAARRVSLI GDFNGWNRESHPLERNERGVWEITLPPDALAHGQKVKVHVVGADGTGRDRIPAWITRTVQDPTTYDFAGEIWMPEHPYEW RNNGFDPSRVEVPFVYEAHVGMGGEEGRVHTYREFADEVLPRIARLGYNTVQLMAIQEHPYYGSFGYHVSSFFAPSSRFG EPEDLKYLIDQAHGLGIAVLLDVVHSHAVKNEAEGLNNFDGSGGMYFLPGERGRHPDWDSCCFDYGRDEVIEFLLSNVRW WLEEFRFDGFRFDGVTSMLYFHRGHEPFGDLGAYFGSSVDLDAVAYLQLAATLIQRVKPGAIAIAEDMSGMPGLCRPVDE GGIGFSHRLAMGIPDYWIKLLKEKKDEEWSMGDMWHTLTNRRYGEPHVAYCESHDQALVGDKTLAFRLMDAEMYWKMAVD QQSLIIDRGMALHKMIRLVTLATGGEGWLNFMGNEFGHPEWIDFPREGNGWSYEYCRRQWSLVDNPSLRFKFLNAFDQAM VRLAQEARLLNNPPPFPLNIDETNHVMAFHRGGLLFVFNWSGDRAIMDYMLPVPQKGEWRVVLDTDNARFGGFGRQDVSM PHFTDGEGNLSLYLLPRTALVLKRVGSAVMARHPGRED >Mature_678_residues MRRPPIPGLVMADGWLQPYSRQIRDRQRLFDLKMKRINQRAGSLEEYARGYRYYGFNRDAETGAWTYREWAPAARRVSLI GDFNGWNRESHPLERNERGVWEITLPPDALAHGQKVKVHVVGADGTGRDRIPAWITRTVQDPTTYDFAGEIWMPEHPYEW RNNGFDPSRVEVPFVYEAHVGMGGEEGRVHTYREFADEVLPRIARLGYNTVQLMAIQEHPYYGSFGYHVSSFFAPSSRFG EPEDLKYLIDQAHGLGIAVLLDVVHSHAVKNEAEGLNNFDGSGGMYFLPGERGRHPDWDSCCFDYGRDEVIEFLLSNVRW WLEEFRFDGFRFDGVTSMLYFHRGHEPFGDLGAYFGSSVDLDAVAYLQLAATLIQRVKPGAIAIAEDMSGMPGLCRPVDE GGIGFSHRLAMGIPDYWIKLLKEKKDEEWSMGDMWHTLTNRRYGEPHVAYCESHDQALVGDKTLAFRLMDAEMYWKMAVD QQSLIIDRGMALHKMIRLVTLATGGEGWLNFMGNEFGHPEWIDFPREGNGWSYEYCRRQWSLVDNPSLRFKFLNAFDQAM VRLAQEARLLNNPPPFPLNIDETNHVMAFHRGGLLFVFNWSGDRAIMDYMLPVPQKGEWRVVLDTDNARFGGFGRQDVSM PHFTDGEGNLSLYLLPRTALVLKRVGSAVMARHPGRED
Specific function: Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position [H]
COG id: COG0296
COG function: function code G; 1,4-alpha-glucan branching enzyme
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 13 family [H]
Homologues:
Organism=Homo sapiens, GI189458812, Length=676, Percent_Identity=50.1479289940828, Blast_Score=652, Evalue=0.0, Organism=Escherichia coli, GI1789839, Length=661, Percent_Identity=29.1981845688351, Blast_Score=196, Evalue=3e-51, Organism=Caenorhabditis elegans, GI17554896, Length=679, Percent_Identity=47.2754050073638, Blast_Score=610, Evalue=1e-174, Organism=Caenorhabditis elegans, GI32564391, Length=602, Percent_Identity=48.671096345515, Blast_Score=563, Evalue=1e-160, Organism=Saccharomyces cerevisiae, GI6320826, Length=694, Percent_Identity=48.9913544668588, Blast_Score=613, Evalue=1e-176, Organism=Drosophila melanogaster, GI28573410, Length=679, Percent_Identity=48.7481590574374, Blast_Score=629, Evalue=1e-180,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006407 - InterPro: IPR006048 - InterPro: IPR013780 - InterPro: IPR006047 - InterPro: IPR004193 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR013783 - InterPro: IPR014756 [H]
Pfam domain/function: PF00128 Alpha-amylase; PF02806 Alpha-amylase_C; PF02922 CBM_48 [H]
EC number: =2.4.1.18 [H]
Molecular weight: Translated: 77762; Mature: 77762
Theoretical pI: Translated: 6.09; Mature: 6.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRPPIPGLVMADGWLQPYSRQIRDRQRLFDLKMKRINQRAGSLEEYARGYRYYGFNRDA CCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCEEECCCCCC ETGAWTYREWAPAARRVSLIGDFNGWNRESHPLERNERGVWEITLPPDALAHGQKVKVHV CCCCEEHHHHCCHHHEEEEEECCCCCCCCCCCCCCCCCCEEEEECCHHHHCCCCEEEEEE VGADGTGRDRIPAWITRTVQDPTTYDFAGEIWMPEHPYEWRNNGFDPSRVEVPFVYEAHV EECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEEEEEEECC GMGGEEGRVHTYREFADEVLPRIARLGYNTVQLMAIQEHPYYGSFGYHVSSFFAPSSRFG CCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHCCCCCCCC EPEDLKYLIDQAHGLGIAVLLDVVHSHAVKNEAEGLNNFDGSGGMYFLPGERGRHPDWDS CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCHHH CCFDYGRDEVIEFLLSNVRWWLEEFRFDGFRFDGVTSMLYFHRGHEPFGDLGAYFGSSVD HHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCCCCHHHHHHHCCCCCC LDAVAYLQLAATLIQRVKPGAIAIAEDMSGMPGLCRPVDEGGIGFSHRLAMGIPDYWIKL HHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHEECCCHHHHHHH LKEKKDEEWSMGDMWHTLTNRRYGEPHVAYCESHDQALVGDKTLAFRLMDAEMYWKMAVD HHHCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCEEECCCEEEEEEECHHHHHHHHCC QQSLIIDRGMALHKMIRLVTLATGGEGWLNFMGNEFGHPEWIDFPREGNGWSYEYCRRQW CHHHHHHCCHHHHHHHHHHHEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH SLVDNPSLRFKFLNAFDQAMVRLAQEARLLNNPPPFPLNIDETNHVMAFHRGGLLFVFNW CCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCEEEEECCCEEEEEEC SGDRAIMDYMLPVPQKGEWRVVLDTDNARFGGFGRQDVSMPHFTDGEGNLSLYLLPRTAL CCCHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEECCCCCEEEEECCHHHH VLKRVGSAVMARHPGRED HHHHHHHHHHHCCCCCCC >Mature Secondary Structure MRRPPIPGLVMADGWLQPYSRQIRDRQRLFDLKMKRINQRAGSLEEYARGYRYYGFNRDA CCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCEEECCCCCC ETGAWTYREWAPAARRVSLIGDFNGWNRESHPLERNERGVWEITLPPDALAHGQKVKVHV CCCCEEHHHHCCHHHEEEEEECCCCCCCCCCCCCCCCCCEEEEECCHHHHCCCCEEEEEE VGADGTGRDRIPAWITRTVQDPTTYDFAGEIWMPEHPYEWRNNGFDPSRVEVPFVYEAHV EECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEEEEEEECC GMGGEEGRVHTYREFADEVLPRIARLGYNTVQLMAIQEHPYYGSFGYHVSSFFAPSSRFG CCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHCCCCCCCC EPEDLKYLIDQAHGLGIAVLLDVVHSHAVKNEAEGLNNFDGSGGMYFLPGERGRHPDWDS CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCHHH CCFDYGRDEVIEFLLSNVRWWLEEFRFDGFRFDGVTSMLYFHRGHEPFGDLGAYFGSSVD HHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCCCCHHHHHHHCCCCCC LDAVAYLQLAATLIQRVKPGAIAIAEDMSGMPGLCRPVDEGGIGFSHRLAMGIPDYWIKL HHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHEECCCHHHHHHH LKEKKDEEWSMGDMWHTLTNRRYGEPHVAYCESHDQALVGDKTLAFRLMDAEMYWKMAVD HHHCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCEEECCCEEEEEEECHHHHHHHHCC QQSLIIDRGMALHKMIRLVTLATGGEGWLNFMGNEFGHPEWIDFPREGNGWSYEYCRRQW CHHHHHHCCHHHHHHHHHHHEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH SLVDNPSLRFKFLNAFDQAMVRLAQEARLLNNPPPFPLNIDETNHVMAFHRGGLLFVFNW CCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCEEEEECCCEEEEEEC SGDRAIMDYMLPVPQKGEWRVVLDTDNARFGGFGRQDVSMPHFTDGEGNLSLYLLPRTAL CCCHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEECCCCCEEEEECCHHHH VLKRVGSAVMARHPGRED HHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA