Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736237
Identifier: 187736237
GI number: 187736237
Start: 2131594
End: 2132610
Strand: Direct
Name: 187736237
Synonym: Amuc_1750
Alternate gene names: NA
Gene position: 2131594-2132610 (Clockwise)
Preceding gene: 187736234
Following gene: 187736238
Centisome position: 80.01
GC content: 56.93
Gene sequence:
>1017_bases ATGAAGCTGCCATCATTCATTACCGCCGGAAGGACTGGAAAATTAGTAAGGGGAAAGCATTGGTGGGTGACGGAAGTCCG GTGCTGCGGCCTGAAAGTGCTTTCTTCCTGCACGGATAGGAAAAAGCGTTTCATCCGTTTTTTCGGTATTCCATGCGGAC GGTTCAAGGTGGGCCGGGAAGGTGAAGCCTCCCAATTGGGCAAACTGGTAAAAGCTACCGTTCGGGCCGAGGAGATGCCC CAGGCGTCCGGAGTGCTGAGGATTGTGCAGCAGGCCATGACCTGTTTTTTGAATGAAGTGGCCGGAATTCTTGAGGAGGG CGGTTATCCGTACTGGCTTGATTTCGGGACGCTGCTGGGCGCGGTGCGGCACCGGGGCTTTATCCCCTGGGATGACGACC TGGATATTTCCATGCTGCGTGAAGATTATGAAAGGTTGAGGGCGAACGCCGCCGGGCTTTTCGGTTCGCGCGGTTTCTCC GTCAGTATGGATCCGTTCATCCAGATAGGGTTGCCGGGCACGTTGTGCAATGTGGACATTTTCCCGTATGACACGGCCCC TGCCGCGTGGTCTCCGGATGCTCCTGAAGAAAGGGAGTGGCTGCTGCGCGGTTACAAGGCATCCGGAATGCTTGATTATG AGGCAGATTCCTCCTGCCGCTACCGGACGCGGTGTTCTTATGAGGAAAAGATGGCGATCCGGGACCGGGTGGTGATGGGA GGACGGCGGCCGGCGGATGGAGGAAACATTTTCCTGGGATTTGAGATTCCTTTTGCCGGCCCGTGCCGCCATTCCTTCCG CCATGAATGGCTGTTTCCGCTTTCCCGCGTTCGGTTTGAGGGGAGGGATTTCCCGGCCCCCAGGATTCCTGAAATGGTGT TGTACGGCCAGTACGGGGACTGGGGAGTGCTGCCGGATTCTCCCCCTGTGCATTTTGATTTGAACCACATTTCCAAGGAG GTTCTGGCCAGGATGATGTACATGCGTGATACGGGGCGCCTTCCCGGGCGCGATTAA
Upstream 100 bases:
>100_bases TGACTTGTAAAAAGTGGGGGATAAGGTTCTGATTCTGCCGGATGTGCTTTCCTGGAAAAATGAATCATATCCTGCGTGTT TTTGACCCAATTTATCTGCG
Downstream 100 bases:
>100_bases AGGGCCGCGCCCTTTTCTTCCCCCGCAGGGAGAAGCCCTTCTTTCTTCCTTGACCCTGCTGATTGAGGAGGGGTATCATC AGATAATGAGAAGACCCCCG
Product: LPS biosynthesis protein-like protein
Products: NA
Alternate protein names: Lipooligosaccharide Cholinephosphotransferase; LicD2 Protein; 2-C-Methyl-D-Erythritol 4-Phosphate Cytidylyltransferase; LPS Biosynthesis Protein; LPS Biosynthesis Protein-Like Protein; LicD-Family Phosphotransferase; Cholinephosphotransferase; LICD Protein Family
Number of amino acids: Translated: 338; Mature: 338
Protein sequence:
>338_residues MKLPSFITAGRTGKLVRGKHWWVTEVRCCGLKVLSSCTDRKKRFIRFFGIPCGRFKVGREGEASQLGKLVKATVRAEEMP QASGVLRIVQQAMTCFLNEVAGILEEGGYPYWLDFGTLLGAVRHRGFIPWDDDLDISMLREDYERLRANAAGLFGSRGFS VSMDPFIQIGLPGTLCNVDIFPYDTAPAAWSPDAPEEREWLLRGYKASGMLDYEADSSCRYRTRCSYEEKMAIRDRVVMG GRRPADGGNIFLGFEIPFAGPCRHSFRHEWLFPLSRVRFEGRDFPAPRIPEMVLYGQYGDWGVLPDSPPVHFDLNHISKE VLARMMYMRDTGRLPGRD
Sequences:
>Translated_338_residues MKLPSFITAGRTGKLVRGKHWWVTEVRCCGLKVLSSCTDRKKRFIRFFGIPCGRFKVGREGEASQLGKLVKATVRAEEMP QASGVLRIVQQAMTCFLNEVAGILEEGGYPYWLDFGTLLGAVRHRGFIPWDDDLDISMLREDYERLRANAAGLFGSRGFS VSMDPFIQIGLPGTLCNVDIFPYDTAPAAWSPDAPEEREWLLRGYKASGMLDYEADSSCRYRTRCSYEEKMAIRDRVVMG GRRPADGGNIFLGFEIPFAGPCRHSFRHEWLFPLSRVRFEGRDFPAPRIPEMVLYGQYGDWGVLPDSPPVHFDLNHISKE VLARMMYMRDTGRLPGRD >Mature_338_residues MKLPSFITAGRTGKLVRGKHWWVTEVRCCGLKVLSSCTDRKKRFIRFFGIPCGRFKVGREGEASQLGKLVKATVRAEEMP QASGVLRIVQQAMTCFLNEVAGILEEGGYPYWLDFGTLLGAVRHRGFIPWDDDLDISMLREDYERLRANAAGLFGSRGFS VSMDPFIQIGLPGTLCNVDIFPYDTAPAAWSPDAPEEREWLLRGYKASGMLDYEADSSCRYRTRCSYEEKMAIRDRVVMG GRRPADGGNIFLGFEIPFAGPCRHSFRHEWLFPLSRVRFEGRDFPAPRIPEMVLYGQYGDWGVLPDSPPVHFDLNHISKE VLARMMYMRDTGRLPGRD
Specific function: Unknown
COG id: COG3475
COG function: function code M; LPS biosynthesis protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38383; Mature: 38383
Theoretical pI: Translated: 8.47; Mature: 8.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLPSFITAGRTGKLVRGKHWWVTEVRCCGLKVLSSCTDRKKRFIRFFGIPCGRFKVGRE CCCCCCEECCCCCCEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCC GEASQLGKLVKATVRAEEMPQASGVLRIVQQAMTCFLNEVAGILEEGGYPYWLDFGTLLG CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHH AVRHRGFIPWDDDLDISMLREDYERLRANAAGLFGSRGFSVSMDPFIQIGLPGTLCNVDI HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEECCCCEEEEEEE FPYDTAPAAWSPDAPEEREWLLRGYKASGMLDYEADSSCRYRTRCSYEEKMAIRDRVVMG ECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCHHCCCHHHHHHHHHHHHCC GRRPADGGNIFLGFEIPFAGPCRHSFRHEWLFPLSRVRFEGRDFPAPRIPEMVLYGQYGD CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCHHHHHEECCCCCCCCCCCCEEEEECCCC WGVLPDSPPVHFDLNHISKEVLARMMYMRDTGRLPGRD CCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MKLPSFITAGRTGKLVRGKHWWVTEVRCCGLKVLSSCTDRKKRFIRFFGIPCGRFKVGRE CCCCCCEECCCCCCEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCC GEASQLGKLVKATVRAEEMPQASGVLRIVQQAMTCFLNEVAGILEEGGYPYWLDFGTLLG CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHH AVRHRGFIPWDDDLDISMLREDYERLRANAAGLFGSRGFSVSMDPFIQIGLPGTLCNVDI HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEECCCCEEEEEEE FPYDTAPAAWSPDAPEEREWLLRGYKASGMLDYEADSSCRYRTRCSYEEKMAIRDRVVMG ECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCHHCCCHHHHHHHHHHHHCC GRRPADGGNIFLGFEIPFAGPCRHSFRHEWLFPLSRVRFEGRDFPAPRIPEMVLYGQYGD CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCHHHHHEECCCCCCCCCCCCEEEEECCCC WGVLPDSPPVHFDLNHISKEVLARMMYMRDTGRLPGRD CCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA