Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is srrA [H]
Identifier: 187736215
GI number: 187736215
Start: 2110233
End: 2110937
Strand: Reverse
Name: srrA [H]
Synonym: Amuc_1728
Alternate gene names: 187736215
Gene position: 2110937-2110233 (Counterclockwise)
Preceding gene: 187736216
Following gene: 187736214
Centisome position: 79.24
GC content: 63.26
Gene sequence:
>705_bases ATGAGTGATTCAGCCTATACCATTCTGATTGCGGAGGACGACGACAGCATCAGGCATGCCCTGACGGACGTTCTGACCGC ATCCGGCTACGAAGTGCTGGCTCTGGAAGAAGGCCTGGCCGCCATCCATGCCGTGCGGGAACGCAATTTCGACCTCGCCC TGCTGGACGTGGCCATGCCGGGCGCGGACGGATTCCAGGTGCTGCAGGTCATGTCTGAGGAACGCCCCGGAACGCCTGTC ATCATGCTCACGGCCCGTGGAGAGGAGGAAGACCGCGTGCAGGGGCTCAAGCTGGGGGCGGACGACTATATTGTCAAACC GTTCAGCATCCGGGAACTGCTCGCCCGCATCGAGGCCGTTCTGCGCAGGTCTCCGGAACGGCCGCGCCAGCTCCGGGAAA TCAGGATCCCCGGCGCCACCCTGGACAGCGCCAACCGCCTGATCACCTTTAAAGACGGGAGGGAAACCTCCCTGACCGCG CGGGAATTCGAATTCCTCACCTATATGGCCACCCACCCCAACCGCGTTATCACGAGGGACGAACTGCTCCGGCGCGTATG GGACGTGGACCCGCGCCTGACGGATACGCGCTCCGTGGAAATGACCGTCATGCGTCTCCGGGACAAGCTCGGGGCCGCCT CCGCCTCCCCCCTGGAGACGCTTAGAAGCCAGGGCTACCGCTGGAATTCATCCTTCGTTTCCTGA
Upstream 100 bases:
>100_bases CCCCCCCCCCGGGAAGACGGCCTGTTATGGCATTGTTACTGAAAGGGCGCAGGTTTCTCTATACAACAGGGGAAATATTG TGGTTTTATAGAATCAAACG
Downstream 100 bases:
>100_bases TCCGTGAACCGGCGCATACGCATCATTCTGCTGGCAATCAGCCTGCTGCTGGTCATCGGCACGCTCGGATGGCTCACCCA TGTTCTGCTGGTGCAGGCGG
Product: two component transcriptional regulator, winged helix family
Products: NA
Alternate protein names: Staphylococcal respiratory response protein A [H]
Number of amino acids: Translated: 234; Mature: 233
Protein sequence:
>234_residues MSDSAYTILIAEDDDSIRHALTDVLTASGYEVLALEEGLAAIHAVRERNFDLALLDVAMPGADGFQVLQVMSEERPGTPV IMLTARGEEEDRVQGLKLGADDYIVKPFSIRELLARIEAVLRRSPERPRQLREIRIPGATLDSANRLITFKDGRETSLTA REFEFLTYMATHPNRVITRDELLRRVWDVDPRLTDTRSVEMTVMRLRDKLGAASASPLETLRSQGYRWNSSFVS
Sequences:
>Translated_234_residues MSDSAYTILIAEDDDSIRHALTDVLTASGYEVLALEEGLAAIHAVRERNFDLALLDVAMPGADGFQVLQVMSEERPGTPV IMLTARGEEEDRVQGLKLGADDYIVKPFSIRELLARIEAVLRRSPERPRQLREIRIPGATLDSANRLITFKDGRETSLTA REFEFLTYMATHPNRVITRDELLRRVWDVDPRLTDTRSVEMTVMRLRDKLGAASASPLETLRSQGYRWNSSFVS >Mature_233_residues SDSAYTILIAEDDDSIRHALTDVLTASGYEVLALEEGLAAIHAVRERNFDLALLDVAMPGADGFQVLQVMSEERPGTPVI MLTARGEEEDRVQGLKLGADDYIVKPFSIRELLARIEAVLRRSPERPRQLREIRIPGATLDSANRLITFKDGRETSLTAR EFEFLTYMATHPNRVITRDELLRRVWDVDPRLTDTRSVEMTVMRLRDKLGAASASPLETLRSQGYRWNSSFVS
Specific function: Member of the two-component regulatory system srrA/srrB, which is involved in the global regulation of staphylococcal virulence factors in response to environmental oxygen levels. SrrA binds to the agr, spa and tst promoters and represses their transcript
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1786599, Length=233, Percent_Identity=39.9141630901288, Blast_Score=148, Evalue=3e-37, Organism=Escherichia coli, GI1786784, Length=220, Percent_Identity=34.0909090909091, Blast_Score=132, Evalue=3e-32, Organism=Escherichia coli, GI1790860, Length=222, Percent_Identity=36.4864864864865, Blast_Score=128, Evalue=3e-31, Organism=Escherichia coli, GI87082012, Length=228, Percent_Identity=35.0877192982456, Blast_Score=127, Evalue=8e-31, Organism=Escherichia coli, GI1788394, Length=226, Percent_Identity=34.5132743362832, Blast_Score=124, Evalue=7e-30, Organism=Escherichia coli, GI1789809, Length=227, Percent_Identity=33.920704845815, Blast_Score=119, Evalue=1e-28, Organism=Escherichia coli, GI1790863, Length=229, Percent_Identity=29.6943231441048, Blast_Score=113, Evalue=9e-27, Organism=Escherichia coli, GI2367329, Length=228, Percent_Identity=38.1578947368421, Blast_Score=111, Evalue=4e-26, Organism=Escherichia coli, GI1789402, Length=219, Percent_Identity=33.3333333333333, Blast_Score=111, Evalue=5e-26, Organism=Escherichia coli, GI1787375, Length=220, Percent_Identity=29.5454545454545, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1790552, Length=221, Percent_Identity=32.1266968325792, Blast_Score=108, Evalue=3e-25, Organism=Escherichia coli, GI1787229, Length=226, Percent_Identity=31.4159292035398, Blast_Score=104, Evalue=6e-24, Organism=Escherichia coli, GI1786911, Length=224, Percent_Identity=32.1428571428571, Blast_Score=100, Evalue=7e-23, Organism=Escherichia coli, GI145693140, Length=232, Percent_Identity=29.3103448275862, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1788550, Length=128, Percent_Identity=34.375, Blast_Score=83, Evalue=1e-17, Organism=Escherichia coli, GI1790299, Length=135, Percent_Identity=32.5925925925926, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1790437, Length=124, Percent_Identity=36.2903225806452, Blast_Score=74, Evalue=6e-15, Organism=Escherichia coli, GI1788713, Length=144, Percent_Identity=31.25, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1788905, Length=124, Percent_Identity=30.6451612903226, Blast_Score=61, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011006 - InterPro: IPR001867 - InterPro: IPR001789 - InterPro: IPR011991 [H]
Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]
EC number: NA
Molecular weight: Translated: 26390; Mature: 26259
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDSAYTILIAEDDDSIRHALTDVLTASGYEVLALEEGLAAIHAVRERNFDLALLDVAMP CCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCCCEEEEEEECC GADGFQVLQVMSEERPGTPVIMLTARGEEEDRVQGLKLGADDYIVKPFSIRELLARIEAV CCCHHHHHHHHHCCCCCCCEEEEEECCCCHHHHCCEEECCCCEEECCHHHHHHHHHHHHH LRRSPERPRQLREIRIPGATLDSANRLITFKDGRETSLTAREFEFLTYMATHPNRVITRD HHCCCCCCHHHHEEECCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHEEECCCCCEECHH ELLRRVWDVDPRLTDTRSVEMTVMRLRDKLGAASASPLETLRSQGYRWNSSFVS HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCC >Mature Secondary Structure SDSAYTILIAEDDDSIRHALTDVLTASGYEVLALEEGLAAIHAVRERNFDLALLDVAMP CCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCCCEEEEEEECC GADGFQVLQVMSEERPGTPVIMLTARGEEEDRVQGLKLGADDYIVKPFSIRELLARIEAV CCCHHHHHHHHHCCCCCCCEEEEEECCCCHHHHCCEEECCCCEEECCHHHHHHHHHHHHH LRRSPERPRQLREIRIPGATLDSANRLITFKDGRETSLTAREFEFLTYMATHPNRVITRD HHCCCCCCHHHHEEECCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHEEECCCCCEECHH ELLRRVWDVDPRLTDTRSVEMTVMRLRDKLGAASASPLETLRSQGYRWNSSFVS HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA