Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is 187736216
Identifier: 187736216
GI number: 187736216
Start: 2111042
End: 2111488
Strand: Reverse
Name: 187736216
Synonym: Amuc_1729
Alternate gene names: NA
Gene position: 2111488-2111042 (Counterclockwise)
Preceding gene: 187736217
Following gene: 187736215
Centisome position: 79.26
GC content: 57.94
Gene sequence:
>447_bases ATGGCTTCAACAACGCTGACGCCGCACGGCCACCGTACCGGAGGTGGACGTACGGGTCAGAACACCGCCCTCCGCATGTC CACCTCCACGAAAATCATTGTCGGCATCGTGATCGTCGTCGTTATGGCGCTCACTTCCTTCTGGGGTGTTTACGCTCCTT CTTTTTCGGAAGCCTATATACTGCCCGTCCAGATGACGGCGGCTGACGGAACACCGCTTGGCGACTTCCAGTGCCGTCCT GTACCCGGGGAAAACGGAAAGACGCTCCTGGTCTTCCGGGATGCGGATTTCCTGCGCCAGACTACGGGCGGCATGGTGCA TTCCAAAATCATCCTTTCCTACAAAGGCACGCCGTTCTTTGAAGGAATTGTCCCCGGTCCCATGGAGGCCATTGAAATTC CCTCCGGCAGCCTTCCTCCCCCCTTACGGGAACTCCGGCATCACTAA
Upstream 100 bases:
>100_bases GCTGGCTGGATGAACGGGAAACAGTTCTGGAGACTCTAATATCCATCCGGCGCGCCGGGGCCGATATGATCCTTACGTAT TACGCCCCCCAGGCCGCCGA
Downstream 100 bases:
>100_bases GCCCCCCCCCCCCCGGGAAGACGGCCTGTTATGGCATTGTTACTGAAAGGGCGCAGGTTTCTCTATACAACAGGGGAAAT ATTGTGGTTTTATAGAATCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 148; Mature: 147
Protein sequence:
>148_residues MASTTLTPHGHRTGGGRTGQNTALRMSTSTKIIVGIVIVVVMALTSFWGVYAPSFSEAYILPVQMTAADGTPLGDFQCRP VPGENGKTLLVFRDADFLRQTTGGMVHSKIILSYKGTPFFEGIVPGPMEAIEIPSGSLPPPLRELRHH
Sequences:
>Translated_148_residues MASTTLTPHGHRTGGGRTGQNTALRMSTSTKIIVGIVIVVVMALTSFWGVYAPSFSEAYILPVQMTAADGTPLGDFQCRP VPGENGKTLLVFRDADFLRQTTGGMVHSKIILSYKGTPFFEGIVPGPMEAIEIPSGSLPPPLRELRHH >Mature_147_residues ASTTLTPHGHRTGGGRTGQNTALRMSTSTKIIVGIVIVVVMALTSFWGVYAPSFSEAYILPVQMTAADGTPLGDFQCRPV PGENGKTLLVFRDADFLRQTTGGMVHSKIILSYKGTPFFEGIVPGPMEAIEIPSGSLPPPLRELRHH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15878; Mature: 15746
Theoretical pI: Translated: 9.16; Mature: 9.16
Prosite motif: PS00041 HTH_ARAC_FAMILY_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASTTLTPHGHRTGGGRTGQNTALRMSTSTKIIVGIVIVVVMALTSFWGVYAPSFSEAYI CCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE LPVQMTAADGTPLGDFQCRPVPGENGKTLLVFRDADFLRQTTGGMVHSKIILSYKGTPFF EEEEEECCCCCCCCCCEECCCCCCCCCEEEEEECCHHHHHHCCCEEEEEEEEEECCCCCC EGIVPGPMEAIEIPSGSLPPPLRELRHH CCCCCCCCCEEECCCCCCCCCHHHHCCC >Mature Secondary Structure ASTTLTPHGHRTGGGRTGQNTALRMSTSTKIIVGIVIVVVMALTSFWGVYAPSFSEAYI CCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE LPVQMTAADGTPLGDFQCRPVPGENGKTLLVFRDADFLRQTTGGMVHSKIILSYKGTPFF EEEEEECCCCCCCCCCEECCCCCCCCCEEEEEECCHHHHHHCCCEEEEEEEEEECCCCCC EGIVPGPMEAIEIPSGSLPPPLRELRHH CCCCCCCCCEEECCCCCCCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA