Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is nuoD
Identifier: 187736103
GI number: 187736103
Start: 1939768
End: 1941012
Strand: Reverse
Name: nuoD
Synonym: Amuc_1614
Alternate gene names: 187736103
Gene position: 1941012-1939768 (Counterclockwise)
Preceding gene: 187736105
Following gene: 187736102
Centisome position: 72.86
GC content: 56.14
Gene sequence:
>1245_bases ATGAAGACGAGCACCAAAACTTTCGCCATTGCAGATACAGCCGCTAACGCAGACTATCTCACCAATACATCCGAACCGCT CGGAGAAACGATGACCCTGAATGTGGGCCCCTCCCACCCCGCCACCCACGGCGTGCTGCGCCTAGTGCTGGAACTTGATG GTGAAGAAATCATCAGCTGTGATCCGGTGGTTGGCCATCTGCACCGCGGAATGGAAAAAATAGGCGAAACCATCCAGTAC AACCAATTTGTTCCCTACACCGACCGTTTTGACTACCTGGCCCCCCTGTCCAACAACATCGCCTATGCCTGCGCGGTGGA AAAACTGCTGGGATGGGAACTGCCGCCCCGCGGACAGGCCCTGCGCGTACTGGCCCTGGAACTTTCCCGCTTTTCCTCCC ACATCCTGGGCGTAGGCGTGTACGGCATGGACGTAGGCGCCATGACCGTTTTCCTGTACTGTTATGAGGAACGTGAAAAA ATCCATAATTTTTACGAACAGCTCACTGGGGCGCGCTTTACTTCCTCCTATACCCGCATCGGCGGACAGACGCGTGATGT TCCCAATGAAATGCTCAAGGAAGTGCTCGTCTTCTGCGATGAAGCGGCCAAAACCCTTGATGAAACGGAAGCCCTCCTGC TCAAAAACAAAATCTTCATTGACCGTCTTCAGGGCGTAGGCGTCATCAGCCGTGAAAAAGCGCTTTCCTGGGGTATTACG GGGGCCAACCTGCGAGCCAGCGGCATTAAGCGGGACCTGCGCAAACTCACCCCCTATCTGGGATATGAAAATTACGAATT CGACGTCCCCGTAGGCGAACACGGAGACTGCTACGACCGTTTTACCGTGCGCATTGAAGAAATGCGCCAGTCCCTGCGCA TCATCCGCCAAGTCATTGAAACCATGCCGGACGGCCCCATCAACATGGTGGACACCAAAGGCACGCTGCCTGAAAAGAAA AAAGTCCTGACGGACATGGAATCCCTGATTCGCCAGTTCATGACGACGACCATGGGGGTGAACGCCCCTGCCGGGCAGGT TTACTTTGCCGCGGAAAACCCGAAGGGAGAGCTGGGTTTCTTCCTGGACTCCAAGGGGGGCGGGCTTCCCAACCGCCTGC GCATGCGCTCCCCCTCCTTCTGCAACCTGTCCATCCTGCCGGAACTGATGAAAGGCCACCTGGTTTCCGACGTTCCGGCC ATTCTCGGCTCCTTCGACTTCGTGATGGGCGAATGCGACCGTTAA
Upstream 100 bases:
>100_bases CCGGAATGCCAAAAAAACTGACATTTGGCTTGCCCGCATGGTGTGAAGTGGCATAATCATCCGGCACCATTATCAGGTTC AGCCAGGCACGGACATCCAC
Downstream 100 bases:
>100_bases ACACCCGCCACTTTCATCCACTTCAACGCAAACACCAAACTTTTTCCCCATGTCCGATTACGCTGAAAACGCCATCGACG CGACTATCGCCCACCAGCCC
Product: NADH dehydrogenase I, D subunit
Products: NA
Alternate protein names: NADH dehydrogenase I subunit D; NDH-1 subunit D
Number of amino acids: Translated: 414; Mature: 414
Protein sequence:
>414_residues MKTSTKTFAIADTAANADYLTNTSEPLGETMTLNVGPSHPATHGVLRLVLELDGEEIISCDPVVGHLHRGMEKIGETIQY NQFVPYTDRFDYLAPLSNNIAYACAVEKLLGWELPPRGQALRVLALELSRFSSHILGVGVYGMDVGAMTVFLYCYEEREK IHNFYEQLTGARFTSSYTRIGGQTRDVPNEMLKEVLVFCDEAAKTLDETEALLLKNKIFIDRLQGVGVISREKALSWGIT GANLRASGIKRDLRKLTPYLGYENYEFDVPVGEHGDCYDRFTVRIEEMRQSLRIIRQVIETMPDGPINMVDTKGTLPEKK KVLTDMESLIRQFMTTTMGVNAPAGQVYFAAENPKGELGFFLDSKGGGLPNRLRMRSPSFCNLSILPELMKGHLVSDVPA ILGSFDFVMGECDR
Sequences:
>Translated_414_residues MKTSTKTFAIADTAANADYLTNTSEPLGETMTLNVGPSHPATHGVLRLVLELDGEEIISCDPVVGHLHRGMEKIGETIQY NQFVPYTDRFDYLAPLSNNIAYACAVEKLLGWELPPRGQALRVLALELSRFSSHILGVGVYGMDVGAMTVFLYCYEEREK IHNFYEQLTGARFTSSYTRIGGQTRDVPNEMLKEVLVFCDEAAKTLDETEALLLKNKIFIDRLQGVGVISREKALSWGIT GANLRASGIKRDLRKLTPYLGYENYEFDVPVGEHGDCYDRFTVRIEEMRQSLRIIRQVIETMPDGPINMVDTKGTLPEKK KVLTDMESLIRQFMTTTMGVNAPAGQVYFAAENPKGELGFFLDSKGGGLPNRLRMRSPSFCNLSILPELMKGHLVSDVPA ILGSFDFVMGECDR >Mature_414_residues MKTSTKTFAIADTAANADYLTNTSEPLGETMTLNVGPSHPATHGVLRLVLELDGEEIISCDPVVGHLHRGMEKIGETIQY NQFVPYTDRFDYLAPLSNNIAYACAVEKLLGWELPPRGQALRVLALELSRFSSHILGVGVYGMDVGAMTVFLYCYEEREK IHNFYEQLTGARFTSSYTRIGGQTRDVPNEMLKEVLVFCDEAAKTLDETEALLLKNKIFIDRLQGVGVISREKALSWGIT GANLRASGIKRDLRKLTPYLGYENYEFDVPVGEHGDCYDRFTVRIEEMRQSLRIIRQVIETMPDGPINMVDTKGTLPEKK KVLTDMESLIRQFMTTTMGVNAPAGQVYFAAENPKGELGFFLDSKGGGLPNRLRMRSPSFCNLSILPELMKGHLVSDVPA ILGSFDFVMGECDR
Specific function: NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocat
COG id: COG0649
COG function: function code C; NADH:ubiquinone oxidoreductase 49 kD subunit 7
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the complex I 49 kDa subunit family
Homologues:
Organism=Homo sapiens, GI4758786, Length=386, Percent_Identity=47.9274611398964, Blast_Score=365, Evalue=1e-101, Organism=Homo sapiens, GI260898743, Length=380, Percent_Identity=47.3684210526316, Blast_Score=353, Evalue=1e-97, Organism=Escherichia coli, GI145693162, Length=385, Percent_Identity=42.8571428571429, Blast_Score=332, Evalue=3e-92, Organism=Escherichia coli, GI1789076, Length=384, Percent_Identity=28.6458333333333, Blast_Score=147, Evalue=2e-36, Organism=Escherichia coli, GI1788832, Length=388, Percent_Identity=28.6082474226804, Blast_Score=147, Evalue=2e-36, Organism=Caenorhabditis elegans, GI17555284, Length=409, Percent_Identity=42.5427872860636, Blast_Score=358, Evalue=2e-99, Organism=Caenorhabditis elegans, GI17568379, Length=409, Percent_Identity=42.7872860635697, Blast_Score=357, Evalue=6e-99, Organism=Drosophila melanogaster, GI24638644, Length=384, Percent_Identity=46.6145833333333, Blast_Score=375, Evalue=1e-104, Organism=Drosophila melanogaster, GI221459469, Length=385, Percent_Identity=44.6753246753247, Blast_Score=354, Evalue=5e-98,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NUOD_AKKM8 (B2ULZ0)
Other databases:
- EMBL: CP001071 - RefSeq: YP_001878215.1 - ProteinModelPortal: B2ULZ0 - SMR: B2ULZ0 - GeneID: 6275404 - GenomeReviews: CP001071_GR - KEGG: amu:Amuc_1614 - HOGENOM: HBG459705 - OMA: GVFIQGN - ProtClustDB: CLSK2335533 - GO: GO:0006810 - HAMAP: MF_01358 - InterPro: IPR010219 - InterPro: IPR001135 - InterPro: IPR022885 - TIGRFAMs: TIGR01962
Pfam domain/function: PF00346 Complex1_49kDa
EC number: =1.6.99.5
Molecular weight: Translated: 46176; Mature: 46176
Theoretical pI: Translated: 5.34; Mature: 5.34
Prosite motif: PS00535 COMPLEX1_49K
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTSTKTFAIADTAANADYLTNTSEPLGETMTLNVGPSHPATHGVLRLVLELDGEEIISC CCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEC DPVVGHLHRGMEKIGETIQYNQFVPYTDRFDYLAPLSNNIAYACAVEKLLGWELPPRGQA CHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCHHCCCCCCEEHHHHHHHHHCCCCCCCCCH LRVLALELSRFSSHILGVGVYGMDVGAMTVFLYCYEEREKIHNFYEQLTGARFTSSYTRI HHHHHHHHHHHHHHHHEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC GGQTRDVPNEMLKEVLVFCDEAAKTLDETEALLLKNKIFIDRLQGVGVISREKALSWGIT CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHCCCC GANLRASGIKRDLRKLTPYLGYENYEFDVPVGEHGDCYDRFTVRIEEMRQSLRIIRQVIE CCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH TMPDGPINMVDTKGTLPEKKKVLTDMESLIRQFMTTTMGVNAPAGQVYFAAENPKGELGF HCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEE FLDSKGGGLPNRLRMRSPSFCNLSILPELMKGHLVSDVPAILGSFDFVMGECDR EEECCCCCCCCHHCCCCCCCCCHHHHHHHHHCHHHHHHHHHHCCHHHHHCCCCC >Mature Secondary Structure MKTSTKTFAIADTAANADYLTNTSEPLGETMTLNVGPSHPATHGVLRLVLELDGEEIISC CCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEC DPVVGHLHRGMEKIGETIQYNQFVPYTDRFDYLAPLSNNIAYACAVEKLLGWELPPRGQA CHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCHHCCCCCCEEHHHHHHHHHCCCCCCCCCH LRVLALELSRFSSHILGVGVYGMDVGAMTVFLYCYEEREKIHNFYEQLTGARFTSSYTRI HHHHHHHHHHHHHHHHEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC GGQTRDVPNEMLKEVLVFCDEAAKTLDETEALLLKNKIFIDRLQGVGVISREKALSWGIT CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHCCCC GANLRASGIKRDLRKLTPYLGYENYEFDVPVGEHGDCYDRFTVRIEEMRQSLRIIRQVIE CCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH TMPDGPINMVDTKGTLPEKKKVLTDMESLIRQFMTTTMGVNAPAGQVYFAAENPKGELGF HCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEE FLDSKGGGLPNRLRMRSPSFCNLSILPELMKGHLVSDVPAILGSFDFVMGECDR EEECCCCCCCCHHCCCCCCCCCHHHHHHHHHCHHHHHHHHHHCCHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA