Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is ruvA [H]
Identifier: 187735908
GI number: 187735908
Start: 1694530
End: 1695192
Strand: Direct
Name: ruvA [H]
Synonym: Amuc_1416
Alternate gene names: 187735908
Gene position: 1694530-1695192 (Clockwise)
Preceding gene: 187735907
Following gene: 187735909
Centisome position: 63.61
GC content: 59.28
Gene sequence:
>663_bases ATGACGGAAGCGGTTCCGGAGGATGCGTTTTTAGCTTGCGCGCGGGCCGGATTGTGTCACGTTAAGGGTATGATAGCTTT TCTGCGCGGCACGGTGGCGGAATCATATCCCCAGCGGTTGATCCTGGATGTTCATGGGGTGGGGTATGAAGTGATTGTGC CCCTGTCCACGTTTGACAGGCTGAATCCCCTTCCCGGCAGAGAGCTGACGCTGAAAACCTACCTGCATGTCCGGGAGAAC ATGCAGGTGCTGTACGGTTTTGCCACGGATGCGGAAAGGGATATTTTCCTGCTGCTGATTGAACGTGTTTCCGGAATCGG CCCGGCAACGGCGATTGCCATTTTGGGTTCCCTGTCCGTGGAGCAGTTCAAGCAGGCGGTTGTGGGCGGAGATGTTTCCG GCATTGCTCGGGCCAAGGGGGTGGGCAAGAAGACGGCGGAACGCATCGTCCTGGAACTGAAGGATAAAGTGGGCCTGGCC GCCACGTGGGAAGCCCAGGCCCAGGGCGCTACTTCCCAGGCCGCCGGGGACGCGGAATTGGCGCTGATTGCGCTCGGGTT CAAGCAGGTGGAATCCCGCAAGGCGATAGCCGCCCATCTGAAGGACCATCCGGATGCAGACGTGGACGAGCTCATACGCG CCGCTTTGCGTTCCATGAATTGA
Upstream 100 bases:
>100_bases AATACAGGTGCAGGATGAAAACAGCCCGTGGACTGCGCGTGCGCTGCTTTTACCACCGGGAGGATCTGGAACATGTCAGG CTGCACGTGCTCCAGAAAAG
Downstream 100 bases:
>100_bases AGGAGCTTCCGGAGGAAGGAAGGTGTTTTTGCAAGTTTTTGATTTTCATGAGGGAACATGTCCGCCTGGCGGAGTGTTCC CTGTTTGCGGAAGCTGGGGG
Product: Holliday junction DNA helicase RuvA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 220; Mature: 219
Protein sequence:
>220_residues MTEAVPEDAFLACARAGLCHVKGMIAFLRGTVAESYPQRLILDVHGVGYEVIVPLSTFDRLNPLPGRELTLKTYLHVREN MQVLYGFATDAERDIFLLLIERVSGIGPATAIAILGSLSVEQFKQAVVGGDVSGIARAKGVGKKTAERIVLELKDKVGLA ATWEAQAQGATSQAAGDAELALIALGFKQVESRKAIAAHLKDHPDADVDELIRAALRSMN
Sequences:
>Translated_220_residues MTEAVPEDAFLACARAGLCHVKGMIAFLRGTVAESYPQRLILDVHGVGYEVIVPLSTFDRLNPLPGRELTLKTYLHVREN MQVLYGFATDAERDIFLLLIERVSGIGPATAIAILGSLSVEQFKQAVVGGDVSGIARAKGVGKKTAERIVLELKDKVGLA ATWEAQAQGATSQAAGDAELALIALGFKQVESRKAIAAHLKDHPDADVDELIRAALRSMN >Mature_219_residues TEAVPEDAFLACARAGLCHVKGMIAFLRGTVAESYPQRLILDVHGVGYEVIVPLSTFDRLNPLPGRELTLKTYLHVRENM QVLYGFATDAERDIFLLLIERVSGIGPATAIAILGSLSVEQFKQAVVGGDVSGIARAKGVGKKTAERIVLELKDKVGLAA TWEAQAQGATSQAAGDAELALIALGFKQVESRKAIAAHLKDHPDADVDELIRAALRSMN
Specific function: The ruvA-ruvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is an helicase that mediates the Holliday
COG id: COG0632
COG function: function code L; Holliday junction resolvasome, DNA-binding subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ruvA family [H]
Homologues:
Organism=Escherichia coli, GI1788168, Length=205, Percent_Identity=39.5121951219512, Blast_Score=130, Evalue=9e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011114 - InterPro: IPR013849 - InterPro: IPR003583 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR000085 - InterPro: IPR010994 [H]
Pfam domain/function: PF07499 RuvA_C; PF01330 RuvA_N [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 23560; Mature: 23428
Theoretical pI: Translated: 6.36; Mature: 6.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEAVPEDAFLACARAGLCHVKGMIAFLRGTVAESYPQRLILDVHGVGYEVIVPLSTFDR CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCEEEEEECHHHHH LNPLPGRELTLKTYLHVRENMQVLYGFATDAERDIFLLLIERVSGIGPATAIAILGSLSV CCCCCCCCEEHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCH EQFKQAVVGGDVSGIARAKGVGKKTAERIVLELKDKVGLAATWEAQAQGATSQAAGDAEL HHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCHHHCCCCCCCCCCCCE ALIALGFKQVESRKAIAAHLKDHPDADVDELIRAALRSMN EHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC >Mature Secondary Structure TEAVPEDAFLACARAGLCHVKGMIAFLRGTVAESYPQRLILDVHGVGYEVIVPLSTFDR CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCEEEEEECHHHHH LNPLPGRELTLKTYLHVRENMQVLYGFATDAERDIFLLLIERVSGIGPATAIAILGSLSV CCCCCCCCEEHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCH EQFKQAVVGGDVSGIARAKGVGKKTAERIVLELKDKVGLAATWEAQAQGATSQAAGDAEL HHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCHHHCCCCCCCCCCCCE ALIALGFKQVESRKAIAAHLKDHPDADVDELIRAALRSMN EHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA