Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is intE [C]
Identifier: 187735871
GI number: 187735871
Start: 1642372
End: 1643622
Strand: Reverse
Name: intE [C]
Synonym: Amuc_1378
Alternate gene names: 187735871
Gene position: 1643622-1642372 (Counterclockwise)
Preceding gene: 187735872
Following gene: 187735861
Centisome position: 61.7
GC content: 51.88
Gene sequence:
>1251_bases ATGGCCTCCATCTATAAAAAGCCGAACAGCCCTTACTGGTACGCACAATACCGCGTGAGAACCGCTACAGGCTGGAAACT GGTCCGGCTGTCAACCAAAATCAAGCATACCCCCGCCACGGTAACAAGGGAAGTAAAAGAAGCCGCAGAGTCCATGGGGA AGCAGCTGAACGTCCTGACCAGGGAACAGGCTATGACCAAGGCACAACGCCTGGCGGACGCCCTTGAATCAACGGCGCGG GCAAACCTGCCGGCCTATCAATTACGCCGGGCCATTTCCGCATTGTCCACGGAATTGACCGGAGAATCTATGGAAATGCC CTCTGTCAAATTATGGCTTGATGACCACATGCGGCGCATTACGCGCAATGGGCTTAAACCCGCATCCATAGCGAACTACA AACAAGCCTTTGACAAATTTCGCGCCTCAATGGGAGAACGTATCAACCTGCCTCTGGATCGCATTACTCCTCTGATGCTG GACGATTTCAAAAACCATCTTCTTTCCCGTGTCTCACCATCTACCGCCAATATTGCTCTTACGCTGGTTTCCGCGGCGTT CCAGGCGGCAGTTGATTATAAAATTATTGAAACCAACCCCTTTACGGCGATTACCAAGCCTCACAAGGGGAAAGCCGTCA AACGGCGGAAATTCGAATTGGAAGAGCTTGAAAAGGTAATGGCCGCATGCAATCCGGAATGGCGCTCCATGGTGAAAACG TGCCTCTATACGGGCGGTCAAAGATTGGGAGACGTGGCAACGCTCCGGTGGTCCCAGGTTGACGAGAAACGAGGCGTTAT CCGGATGACCACGCAGAAAAAGGGAAAGCCTCTGATGATTCCGATTTTTCCGGCGCTGAAAAAACACCTGCAGCAACGGA AGAAAGAAGCTCCTGGGGACTTCCTGCATCCTGAATGCGCGAATATTTTTGAAAGCAAGGGATCCGGACGCCTGTCAAAT ATCTTTAGCCACATCCTGTACCAGTGTGGCCTTATTGCCAAAGACCCTCTGGCTGCAGGCAAAAAATACAAAAAGCAGGA AGGAAACGGCACAGAGACGCGGCGCCACGTCAATGAATTGTCCTTCCACAGCCTCCGCTATACGGCAACAACCATGTTAC ATGACGCCGGTGTTCCCCCTGCTCTTGTGCAAGCCATTGTGGGGCACGATTCCCGGGAAGTCCATGAAGGATACATCGAC TTTGGAGCCAAGGAGTTTACACAAGCCCTTGAAAAGCTTCCCAAATTGTAG
Upstream 100 bases:
>100_bases CTCTAAACAAAGCTCTTACGAAATTTCAGAAAACACAAAAACATCTTGAAACATGGTGATACAACTTGCAAAAAGAGCAC ACTATTGATACCACTAAATC
Downstream 100 bases:
>100_bases CACTACCTTAAATAGTGATATCATGTTTTAAACCTCCCTGTAAGTCGTGGCGGCAGCGTCCCATTTCAGGTCAATGTAAC CAATCTCCCCGAAGCGGTTC
Product: integrase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 416; Mature: 415
Protein sequence:
>416_residues MASIYKKPNSPYWYAQYRVRTATGWKLVRLSTKIKHTPATVTREVKEAAESMGKQLNVLTREQAMTKAQRLADALESTAR ANLPAYQLRRAISALSTELTGESMEMPSVKLWLDDHMRRITRNGLKPASIANYKQAFDKFRASMGERINLPLDRITPLML DDFKNHLLSRVSPSTANIALTLVSAAFQAAVDYKIIETNPFTAITKPHKGKAVKRRKFELEELEKVMAACNPEWRSMVKT CLYTGGQRLGDVATLRWSQVDEKRGVIRMTTQKKGKPLMIPIFPALKKHLQQRKKEAPGDFLHPECANIFESKGSGRLSN IFSHILYQCGLIAKDPLAAGKKYKKQEGNGTETRRHVNELSFHSLRYTATTMLHDAGVPPALVQAIVGHDSREVHEGYID FGAKEFTQALEKLPKL
Sequences:
>Translated_416_residues MASIYKKPNSPYWYAQYRVRTATGWKLVRLSTKIKHTPATVTREVKEAAESMGKQLNVLTREQAMTKAQRLADALESTAR ANLPAYQLRRAISALSTELTGESMEMPSVKLWLDDHMRRITRNGLKPASIANYKQAFDKFRASMGERINLPLDRITPLML DDFKNHLLSRVSPSTANIALTLVSAAFQAAVDYKIIETNPFTAITKPHKGKAVKRRKFELEELEKVMAACNPEWRSMVKT CLYTGGQRLGDVATLRWSQVDEKRGVIRMTTQKKGKPLMIPIFPALKKHLQQRKKEAPGDFLHPECANIFESKGSGRLSN IFSHILYQCGLIAKDPLAAGKKYKKQEGNGTETRRHVNELSFHSLRYTATTMLHDAGVPPALVQAIVGHDSREVHEGYID FGAKEFTQALEKLPKL >Mature_415_residues ASIYKKPNSPYWYAQYRVRTATGWKLVRLSTKIKHTPATVTREVKEAAESMGKQLNVLTREQAMTKAQRLADALESTARA NLPAYQLRRAISALSTELTGESMEMPSVKLWLDDHMRRITRNGLKPASIANYKQAFDKFRASMGERINLPLDRITPLMLD DFKNHLLSRVSPSTANIALTLVSAAFQAAVDYKIIETNPFTAITKPHKGKAVKRRKFELEELEKVMAACNPEWRSMVKTC LYTGGQRLGDVATLRWSQVDEKRGVIRMTTQKKGKPLMIPIFPALKKHLQQRKKEAPGDFLHPECANIFESKGSGRLSNI FSHILYQCGLIAKDPLAAGKKYKKQEGNGTETRRHVNELSFHSLRYTATTMLHDAGVPPALVQAIVGHDSREVHEGYIDF GAKEFTQALEKLPKL
Specific function: Integrase From The Cryptic Lambdoic Prophage E14. Integrase Is Necessary For Integration Of The Phage Into The Host Genome By Site-Specific Recombination. In Conjunction With Excisionase, Integrase Is Also Necessary For Excision Of The Prophage From The
COG id: COG0582
COG function: function code L; Integrase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46903; Mature: 46772
Theoretical pI: Translated: 10.48; Mature: 10.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASIYKKPNSPYWYAQYRVRTATGWKLVRLSTKIKHTPATVTREVKEAAESMGKQLNVLT CCCCCCCCCCCEEEEEEEEEECCCEEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH REQAMTKAQRLADALESTARANLPAYQLRRAISALSTELTGESMEMPSVKLWLDDHMRRI HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHH TRNGLKPASIANYKQAFDKFRASMGERINLPLDRITPLMLDDFKNHLLSRVSPSTANIAL HHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH TLVSAAFQAAVDYKIIETNPFTAITKPHKGKAVKRRKFELEELEKVMAACNPEWRSMVKT HHHHHHHHHHHCEEEEECCCCEEECCCCCCCHHHHHHCCHHHHHHHHHHCCHHHHHHHHH CLYTGGQRLGDVATLRWSQVDEKRGVIRMTTQKKGKPLMIPIFPALKKHLQQRKKEAPGD HHHHCCHHHCHHHHHHHHHHHHHCCEEEEECCCCCCEEEEECHHHHHHHHHHHHHCCCCC FLHPECANIFESKGSGRLSNIFSHILYQCGLIAKDPLAAGKKYKKQEGNGTETRRHVNEL CCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHCHHHHHCCCCCHHHHHHHHHH SFHSLRYTATTMLHDAGVPPALVQAIVGHDSREVHEGYIDFGAKEFTQALEKLPKL HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCC >Mature Secondary Structure ASIYKKPNSPYWYAQYRVRTATGWKLVRLSTKIKHTPATVTREVKEAAESMGKQLNVLT CCCCCCCCCCEEEEEEEEEECCCEEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH REQAMTKAQRLADALESTARANLPAYQLRRAISALSTELTGESMEMPSVKLWLDDHMRRI HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHH TRNGLKPASIANYKQAFDKFRASMGERINLPLDRITPLMLDDFKNHLLSRVSPSTANIAL HHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH TLVSAAFQAAVDYKIIETNPFTAITKPHKGKAVKRRKFELEELEKVMAACNPEWRSMVKT HHHHHHHHHHHCEEEEECCCCEEECCCCCCCHHHHHHCCHHHHHHHHHHCCHHHHHHHHH CLYTGGQRLGDVATLRWSQVDEKRGVIRMTTQKKGKPLMIPIFPALKKHLQQRKKEAPGD HHHHCCHHHCHHHHHHHHHHHHHCCEEEEECCCCCCEEEEECHHHHHHHHHHHHHCCCCC FLHPECANIFESKGSGRLSNIFSHILYQCGLIAKDPLAAGKKYKKQEGNGTETRRHVNEL CCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHCHHHHHCCCCCHHHHHHHHHH SFHSLRYTATTMLHDAGVPPALVQAIVGHDSREVHEGYIDFGAKEFTQALEKLPKL HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA