Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is recR [H]
Identifier: 187735818
GI number: 187735818
Start: 1603615
End: 1604223
Strand: Reverse
Name: recR [H]
Synonym: Amuc_1325
Alternate gene names: 187735818
Gene position: 1604223-1603615 (Counterclockwise)
Preceding gene: 187735819
Following gene: 187735814
Centisome position: 60.22
GC content: 63.38
Gene sequence:
>609_bases ATGAATAATCTGGACTATCCCATCCCCGTGCTTGAACTGGTAACCGCCCTGAAACAGCTTCCGGGCATCGGCACCCGCGG CGCGGAACGCATGGCCCTGTGGATGCTCCAGGGGCACATGGGAGAAGCGGAGGCGATTGCCCGCACCATCGGCCAGGCGG CGGAACACGTTACGCCCTGCCCCGTCTGCGGCTTCTTCAGCACGGAAGGGGAGCCCTGCGCCGCCTGCCGGGATGAAGAA CGGGACAGCCGCCTCATCTGCGTGGTGGAACAGGCCACGGACGTCATCCCCATTGAACGCAGCAGCGCCTACCGCGGATT GTACCACTGCCTGGGCGGCAAGCTTTCCCCTCTGGATGATGTGGAGCCGGAAGACCTCAACATTCAATCCCTGGTGGAAC GCGTCTCCCGGCAGCCTGATTGCGAAGTCATTCTGGCAACAGGCTCTGACGTGGAAGGGGAGGCAACGGCCACCTACCTC CACCATCTGCTCAAAGAAATGGATTGCAGGATATCCCGCCCTGCCCAGGGGCTGCCTGCCGGCTCCGGCCTCAGCCACGC GGACACGCTGACGCTGATGAAGGCTCTGGAAGGACGCACCCGGCTGTAA
Upstream 100 bases:
>100_bases GCCGTCCCATGCCTGCTTTCCGCAGGGAGCGCGGGCGCGCTCGCCATCCTCTGGCCCCAAACGCCCCCTGTCCGGCGTCA TTCCGAACCTCCTTCCGCTC
Downstream 100 bases:
>100_bases AGGAAAGCCCTTTCCGCATCCATCCCGGCATGGGGACGGTTCCGTCTTTACAGCGGTTTTCCTGCACCGGGCAAAACGCC TCTTTCCCCCCATAATGAAG
Product: recombination protein RecR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 202; Mature: 202
Protein sequence:
>202_residues MNNLDYPIPVLELVTALKQLPGIGTRGAERMALWMLQGHMGEAEAIARTIGQAAEHVTPCPVCGFFSTEGEPCAACRDEE RDSRLICVVEQATDVIPIERSSAYRGLYHCLGGKLSPLDDVEPEDLNIQSLVERVSRQPDCEVILATGSDVEGEATATYL HHLLKEMDCRISRPAQGLPAGSGLSHADTLTLMKALEGRTRL
Sequences:
>Translated_202_residues MNNLDYPIPVLELVTALKQLPGIGTRGAERMALWMLQGHMGEAEAIARTIGQAAEHVTPCPVCGFFSTEGEPCAACRDEE RDSRLICVVEQATDVIPIERSSAYRGLYHCLGGKLSPLDDVEPEDLNIQSLVERVSRQPDCEVILATGSDVEGEATATYL HHLLKEMDCRISRPAQGLPAGSGLSHADTLTLMKALEGRTRL >Mature_202_residues MNNLDYPIPVLELVTALKQLPGIGTRGAERMALWMLQGHMGEAEAIARTIGQAAEHVTPCPVCGFFSTEGEPCAACRDEE RDSRLICVVEQATDVIPIERSSAYRGLYHCLGGKLSPLDDVEPEDLNIQSLVERVSRQPDCEVILATGSDVEGEATATYL HHLLKEMDCRISRPAQGLPAGSGLSHADTLTLMKALEGRTRL
Specific function: May play a role in DNA repair. It seems to be involved in an recBC-independent recombinational process of DNA repair. It may act with recF and recO [H]
COG id: COG0353
COG function: function code L; Recombinational DNA repair protein (RecF pathway)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain [H]
Homologues:
Organism=Escherichia coli, GI1786678, Length=196, Percent_Identity=38.7755102040816, Blast_Score=127, Evalue=5e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003583 - InterPro: IPR000093 - InterPro: IPR006171 - InterPro: IPR015967 [H]
Pfam domain/function: PF02132 RecR; PF01751 Toprim [H]
EC number: NA
Molecular weight: Translated: 21938; Mature: 21938
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 6.9 %Cys+Met (Translated Protein) 4.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 6.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNLDYPIPVLELVTALKQLPGIGTRGAERMALWMLQGHMGEAEAIARTIGQAAEHVTPC CCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC PVCGFFSTEGEPCAACRDEERDSRLICVVEQATDVIPIERSSAYRGLYHCLGGKLSPLDD CCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEECCCCCHHHHHHHHHHCCCCCCCCC VEPEDLNIQSLVERVSRQPDCEVILATGSDVEGEATATYLHHLLKEMDCRISRPAQGLPA CCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC GSGLSHADTLTLMKALEGRTRL CCCCCHHHHHHHHHHHCCCCCC >Mature Secondary Structure MNNLDYPIPVLELVTALKQLPGIGTRGAERMALWMLQGHMGEAEAIARTIGQAAEHVTPC CCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC PVCGFFSTEGEPCAACRDEERDSRLICVVEQATDVIPIERSSAYRGLYHCLGGKLSPLDD CCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEECCCCCHHHHHHHHHHCCCCCCCCC VEPEDLNIQSLVERVSRQPDCEVILATGSDVEGEATATYLHHLLKEMDCRISRPAQGLPA CCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC GSGLSHADTLTLMKALEGRTRL CCCCCHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA