Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is tsaA [H]
Identifier: 187735814
GI number: 187735814
Start: 1599129
End: 1599752
Strand: Reverse
Name: tsaA [H]
Synonym: Amuc_1321
Alternate gene names: 187735814
Gene position: 1599752-1599129 (Counterclockwise)
Preceding gene: 187735818
Following gene: 187735813
Centisome position: 60.05
GC content: 57.85
Gene sequence:
>624_bases ATGCTTCTCATAGGAAAACCGGCACCTCATTTCAGCGCTAACGCAGTAGTAAACGGTACCATCGTACCGGATTTCAGCCT TGACCAGTTTAAGGGCAAAAAGTACGTGATCCTGTTCTTCTACCCGAAGGATTTCACCTTCGTGTGCCCTACCGAGCTGA TCGGCTTCCAGGAAGCCCTGGGCGAATTCGAAAAGCGTGACGTGGCCGTCGTCGGCTGCTCCACAGACAGCGAATTCTCC CACTGGGCCTGGATCAACACCCCCCGCAGCCAGGGCGGCATTCAGGGCGTGACCTACCCCATCGTTTCCGACATCAACAA GACCATTTCCGCCGATTACGGCGTGCTGGCCGGAGACGAGGAAATTGACGAAGACGGCAATGTGGAAGTCAACGGGGAAC TGATCGCCTACCGCGGCCTCTTCCTGATTGACAAAGACGGCATCGTCCGCCACCAGCTCATCAACGACTTCCCGCTGGGC CGCTCCATTGATGAAGCCATCCGCGTGGTTGACGCCCTCCAGCACTTCGAACTGTACGGGGAAGTCTGCCCTCTTGGCTG GCACAAGGGAGACGCGGCCATGACCCCGTCCCACGAAGGCGTGGCCTCCTACCTCAGCAAGTAA
Upstream 100 bases:
>100_bases AGAGAAAACAGGCTCTTTTGGAACGAACGGGATATCATTGCCGCTTGACTTTCGTCCGTTTTTTGGAATCATTCTTTTAG AACCAAACCAAAAAACAACC
Downstream 100 bases:
>100_bases GCAGCCCCCCCGGCAATATTTCAAGGCCGCTCCCCTTCCGGGGGAACGGCCTTTTTTCATCCCCGCCTTCCCCTCTTTCC CAACCAGGCGCCATATCCGG
Product: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
Products: NA
Alternate protein names: 26 kDa antigen; Thioredoxin reductase [H]
Number of amino acids: Translated: 207; Mature: 207
Protein sequence:
>207_residues MLLIGKPAPHFSANAVVNGTIVPDFSLDQFKGKKYVILFFYPKDFTFVCPTELIGFQEALGEFEKRDVAVVGCSTDSEFS HWAWINTPRSQGGIQGVTYPIVSDINKTISADYGVLAGDEEIDEDGNVEVNGELIAYRGLFLIDKDGIVRHQLINDFPLG RSIDEAIRVVDALQHFELYGEVCPLGWHKGDAAMTPSHEGVASYLSK
Sequences:
>Translated_207_residues MLLIGKPAPHFSANAVVNGTIVPDFSLDQFKGKKYVILFFYPKDFTFVCPTELIGFQEALGEFEKRDVAVVGCSTDSEFS HWAWINTPRSQGGIQGVTYPIVSDINKTISADYGVLAGDEEIDEDGNVEVNGELIAYRGLFLIDKDGIVRHQLINDFPLG RSIDEAIRVVDALQHFELYGEVCPLGWHKGDAAMTPSHEGVASYLSK >Mature_207_residues MLLIGKPAPHFSANAVVNGTIVPDFSLDQFKGKKYVILFFYPKDFTFVCPTELIGFQEALGEFEKRDVAVVGCSTDSEFS HWAWINTPRSQGGIQGVTYPIVSDINKTISADYGVLAGDEEIDEDGNVEVNGELIAYRGLFLIDKDGIVRHQLINDFPLG RSIDEAIRVVDALQHFELYGEVCPLGWHKGDAAMTPSHEGVASYLSK
Specific function: Directly Reduces Organic Hydroperoxides In Its Reduced Dithiol Form. [C]
COG id: COG0450
COG function: function code O; Peroxiredoxin
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Homo sapiens, GI32189392, Length=204, Percent_Identity=48.0392156862745, Blast_Score=199, Evalue=2e-51, Organism=Homo sapiens, GI4505591, Length=204, Percent_Identity=47.5490196078431, Blast_Score=197, Evalue=5e-51, Organism=Homo sapiens, GI32455266, Length=204, Percent_Identity=47.5490196078431, Blast_Score=197, Evalue=5e-51, Organism=Homo sapiens, GI32455264, Length=204, Percent_Identity=47.5490196078431, Blast_Score=197, Evalue=5e-51, Organism=Homo sapiens, GI5802974, Length=204, Percent_Identity=45.5882352941176, Blast_Score=189, Evalue=2e-48, Organism=Homo sapiens, GI32483377, Length=200, Percent_Identity=46.5, Blast_Score=188, Evalue=2e-48, Organism=Homo sapiens, GI5453549, Length=204, Percent_Identity=45.0980392156863, Blast_Score=184, Evalue=3e-47, Organism=Homo sapiens, GI4758638, Length=196, Percent_Identity=32.6530612244898, Blast_Score=91, Evalue=7e-19, Organism=Homo sapiens, GI33188454, Length=81, Percent_Identity=55.5555555555556, Blast_Score=90, Evalue=1e-18, Organism=Escherichia coli, GI1786822, Length=198, Percent_Identity=29.7979797979798, Blast_Score=94, Evalue=5e-21, Organism=Caenorhabditis elegans, GI193204376, Length=205, Percent_Identity=48.780487804878, Blast_Score=193, Evalue=6e-50, Organism=Caenorhabditis elegans, GI32565831, Length=205, Percent_Identity=48.780487804878, Blast_Score=192, Evalue=7e-50, Organism=Caenorhabditis elegans, GI17554494, Length=201, Percent_Identity=43.7810945273632, Blast_Score=171, Evalue=3e-43, Organism=Caenorhabditis elegans, GI25153706, Length=187, Percent_Identity=26.7379679144385, Blast_Score=76, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6323613, Length=202, Percent_Identity=45.049504950495, Blast_Score=175, Evalue=4e-45, Organism=Saccharomyces cerevisiae, GI6320661, Length=203, Percent_Identity=42.3645320197044, Blast_Score=159, Evalue=2e-40, Organism=Saccharomyces cerevisiae, GI6319407, Length=198, Percent_Identity=32.3232323232323, Blast_Score=100, Evalue=1e-22, Organism=Drosophila melanogaster, GI24656348, Length=205, Percent_Identity=48.2926829268293, Blast_Score=196, Evalue=9e-51, Organism=Drosophila melanogaster, GI17864676, Length=205, Percent_Identity=48.2926829268293, Blast_Score=196, Evalue=9e-51, Organism=Drosophila melanogaster, GI17157991, Length=194, Percent_Identity=48.4536082474227, Blast_Score=192, Evalue=1e-49, Organism=Drosophila melanogaster, GI24641739, Length=194, Percent_Identity=48.4536082474227, Blast_Score=192, Evalue=1e-49, Organism=Drosophila melanogaster, GI17738015, Length=206, Percent_Identity=43.6893203883495, Blast_Score=177, Evalue=6e-45, Organism=Drosophila melanogaster, GI21357347, Length=206, Percent_Identity=43.2038834951456, Blast_Score=172, Evalue=9e-44, Organism=Drosophila melanogaster, GI24581278, Length=193, Percent_Identity=29.0155440414508, Blast_Score=95, Evalue=3e-20, Organism=Drosophila melanogaster, GI17975518, Length=196, Percent_Identity=33.1632653061224, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI24652436, Length=196, Percent_Identity=33.1632653061224, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI24652434, Length=196, Percent_Identity=33.1632653061224, Blast_Score=89, Evalue=2e-18,
Paralogues:
None
Copy number: 300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2250 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 6040 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1580 Molecules/Cell In: Stationary-Phase
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000866 - InterPro: IPR019479 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF10417 1-cysPrx_C; PF00578 AhpC-TSA [H]
EC number: =1.11.1.15 [H]
Molecular weight: Translated: 22829; Mature: 22829
Theoretical pI: Translated: 4.44; Mature: 4.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLIGKPAPHFSANAVVNGTIVPDFSLDQFKGKKYVILFFYPKDFTFVCPTELIGFQEAL CEEECCCCCCCCCCEEEECEECCCCCHHHHCCCEEEEEEEECCCCEEECCHHHHHHHHHH GEFEKRDVAVVGCSTDSEFSHWAWINTPRSQGGIQGVTYPIVSDINKTISADYGVLAGDE HHHHHCCEEEEECCCCCCCCEEEEEECCCCCCCCCCEEHHHHHHHHHHHCCCCCEEECCC EIDEDGNVEVNGELIAYRGLFLIDKDGIVRHQLINDFPLGRSIDEAIRVVDALQHFELYG CCCCCCCEEECCEEEEEEEEEEECCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH EVCPLGWHKGDAAMTPSHEGVASYLSK CCCCCCCCCCCCCCCCCHHHHHHHHCC >Mature Secondary Structure MLLIGKPAPHFSANAVVNGTIVPDFSLDQFKGKKYVILFFYPKDFTFVCPTELIGFQEAL CEEECCCCCCCCCCEEEECEECCCCCHHHHCCCEEEEEEEECCCCEEECCHHHHHHHHHH GEFEKRDVAVVGCSTDSEFSHWAWINTPRSQGGIQGVTYPIVSDINKTISADYGVLAGDE HHHHHCCEEEEECCCCCCCCEEEEEECCCCCCCCCCEEHHHHHHHHHHHCCCCCEEECCC EIDEDGNVEVNGELIAYRGLFLIDKDGIVRHQLINDFPLGRSIDEAIRVVDALQHFELYG CCCCCCCEEECCEEEEEEEEEEECCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH EVCPLGWHKGDAAMTPSHEGVASYLSK CCCCCCCCCCCCCCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9923682; 1987145 [H]