Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is pdxJ
Identifier: 187735701
GI number: 187735701
Start: 1443246
End: 1443986
Strand: Direct
Name: pdxJ
Synonym: Amuc_1207
Alternate gene names: 187735701
Gene position: 1443246-1443986 (Clockwise)
Preceding gene: 187735700
Following gene: 187735702
Centisome position: 54.17
GC content: 59.78
Gene sequence:
>741_bases ATGCTGCTAGGTGTAAATATAGACCACATCGCCACGTTGAGGCAGGCCCGCTACGCGACCATGCTGGATTCCTTCAATGT GGAGCCGAGTGTTTTGGACGCCGCTTATGCGGCGCAAAGGGGCGGGGCGGATTCCATCACCCTCCATGTCCGGGGCGACC GCCGCCACATGCAGGATGCGGATGCCCTGAGCGTCCGGGAGAGCGTGGCCCTTCCCCTGAACCTGGAAATGGGAAATACC CCGGAGATGGTGGATTTTGCCCTGCGGCTGAAACCGGACTATATCTGCATGGTTCCGGAGAAGCGCGAGGAAATCACTAC GGAAGGCGGCCTGGACGCCGTTTTTCATGAAAAGGATCTGGCTCCCACCATGGCAAGAATGGCCGACAACGGCATTCAGG TGAGCCTGTTCATTGATCCGGAAGTGCCCCAGGTGGAGGCTGCCGCCCGCCTGGGCGCCCCCATGATTGAGTTGCATACC GGATGTTTTGCCAACCATTCCGGCAGGGAGCGCACGGAGGAACTGGCCCGTTTGAAACGCGCCGCGGAACTGGCCCATTC CCTGGGTATCCAGGTGAATGCGGGCCATGGCATCAATTACCAGAATCTGGAACAGCTGCTGGCTGGCGTCCCTTACCTGC ATGAGCTGAACATCGGCCATACGATTGTATCCCGCGCTCTTTTTGTGGGGATGGAGCAGGCCGTGAGGGAAATGCGCCAG GCGATCGACCGCCTGAGCTGA
Upstream 100 bases:
>100_bases CGCCGCTGATGCCGCGGGAATTGCCATGGTATTTACGGGACACCGCCATTTCCTCCATTAATTTGAATGTTCGTCCCCGC CCCTTTGTCTTAAAACCGAT
Downstream 100 bases:
>100_bases TTGCGCCGTTTCAATTGATCCCGGTTGCCGGAGTATGAGCCGCATTGCAGGATTGGGAATGGATTTGGCGGATATGGAAC GCGTACGCCAGGCCCTGCGG
Product: pyridoxine 5'-phosphate synthase
Products: NA
Alternate protein names: PNP synthase
Number of amino acids: Translated: 246; Mature: 246
Protein sequence:
>246_residues MLLGVNIDHIATLRQARYATMLDSFNVEPSVLDAAYAAQRGGADSITLHVRGDRRHMQDADALSVRESVALPLNLEMGNT PEMVDFALRLKPDYICMVPEKREEITTEGGLDAVFHEKDLAPTMARMADNGIQVSLFIDPEVPQVEAAARLGAPMIELHT GCFANHSGRERTEELARLKRAAELAHSLGIQVNAGHGINYQNLEQLLAGVPYLHELNIGHTIVSRALFVGMEQAVREMRQ AIDRLS
Sequences:
>Translated_246_residues MLLGVNIDHIATLRQARYATMLDSFNVEPSVLDAAYAAQRGGADSITLHVRGDRRHMQDADALSVRESVALPLNLEMGNT PEMVDFALRLKPDYICMVPEKREEITTEGGLDAVFHEKDLAPTMARMADNGIQVSLFIDPEVPQVEAAARLGAPMIELHT GCFANHSGRERTEELARLKRAAELAHSLGIQVNAGHGINYQNLEQLLAGVPYLHELNIGHTIVSRALFVGMEQAVREMRQ AIDRLS >Mature_246_residues MLLGVNIDHIATLRQARYATMLDSFNVEPSVLDAAYAAQRGGADSITLHVRGDRRHMQDADALSVRESVALPLNLEMGNT PEMVDFALRLKPDYICMVPEKREEITTEGGLDAVFHEKDLAPTMARMADNGIQVSLFIDPEVPQVEAAARLGAPMIELHT GCFANHSGRERTEELARLKRAAELAHSLGIQVNAGHGINYQNLEQLLAGVPYLHELNIGHTIVSRALFVGMEQAVREMRQ AIDRLS
Specific function: Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
COG id: COG0854
COG function: function code H; Pyridoxal phosphate biosynthesis protein
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PNP synthase family
Homologues:
Organism=Escherichia coli, GI1788917, Length=241, Percent_Identity=49.3775933609959, Blast_Score=239, Evalue=8e-65,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): PDXJ_AKKM8 (B2URE7)
Other databases:
- EMBL: CP001071 - RefSeq: YP_001877813.1 - ProteinModelPortal: B2URE7 - SMR: B2URE7 - GeneID: 6273747 - GenomeReviews: CP001071_GR - KEGG: amu:Amuc_1207 - HOGENOM: HBG299314 - OMA: AGHGLNY - ProtClustDB: PRK05265 - GO: GO:0005737 - HAMAP: MF_00279 - InterPro: IPR013785 - InterPro: IPR004569 - Gene3D: G3DSA:3.20.20.70 - TIGRFAMs: TIGR00559
Pfam domain/function: PF03740 PdxJ; SSF63892 PyrdxlP_synth_PdxJ
EC number: =2.6.99.2
Molecular weight: Translated: 27114; Mature: 27114
Theoretical pI: Translated: 5.33; Mature: 5.33
Prosite motif: NA
Important sites: ACT_SITE 49-49 ACT_SITE 76-76 ACT_SITE 196-196 BINDING 6-6 BINDING 17-17 BINDING 51-51 BINDING 56-56 BINDING 106-106 BINDING 197-197
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLGVNIDHIATLRQARYATMLDSFNVEPSVLDAAYAAQRGGADSITLHVRGDRRHMQDA CEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEEECCHHHHCCC DALSVRESVALPLNLEMGNTPEMVDFALRLKPDYICMVPEKREEITTEGGLDAVFHEKDL HHHHHHHHEECEEEECCCCCCHHHHHHEEECCCEEEECCCHHHHHCCCCCCCHHHCCCCC APTMARMADNGIQVSLFIDPEVPQVEAAARLGAPMIELHTGCFANHSGRERTEELARLKR HHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCEEHHCCCCCCCCCHHHHHHHHHHHH AAELAHSLGIQVNAGHGINYQNLEQLLAGVPYLHELNIGHTIVSRALFVGMEQAVREMRQ HHHHHHHCCCEEECCCCCCHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHH AIDRLS HHHHCC >Mature Secondary Structure MLLGVNIDHIATLRQARYATMLDSFNVEPSVLDAAYAAQRGGADSITLHVRGDRRHMQDA CEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEEECCHHHHCCC DALSVRESVALPLNLEMGNTPEMVDFALRLKPDYICMVPEKREEITTEGGLDAVFHEKDL HHHHHHHHEECEEEECCCCCCHHHHHHEEECCCEEEECCCHHHHHCCCCCCCHHHCCCCC APTMARMADNGIQVSLFIDPEVPQVEAAARLGAPMIELHTGCFANHSGRERTEELARLKR HHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCEEHHCCCCCCCCCHHHHHHHHHHHH AAELAHSLGIQVNAGHGINYQNLEQLLAGVPYLHELNIGHTIVSRALFVGMEQAVREMRQ HHHHHHHCCCEEECCCCCCHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHH AIDRLS HHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA