Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is dapL [H]
Identifier: 187735679
GI number: 187735679
Start: 1420055
End: 1421650
Strand: Direct
Name: dapL [H]
Synonym: Amuc_1185
Alternate gene names: 187735679
Gene position: 1420055-1421650 (Clockwise)
Preceding gene: 187735676
Following gene: 187735680
Centisome position: 53.3
GC content: 55.76
Gene sequence:
>1596_bases ATGTCCCTAGAAGTTCCGGTTTCAAAAGCAGGACTGACGCAGAACGGGGACGAAGCTTGCCGGCTTCTTCAGGGCCATGA TGCCCCGCAGAATGAAGAGGTTCCCTTGCTGGGCATCCGCCTGCCCGTTCTTAGGAATTTTGCCGGGAAGAAGCTCAGGA GAATCTGGCAGGACAGGATGTCGGCGAGGTGCGTGGACCCTCAAAAGGGCAGGAGCAGCCGCTTTTACACGGCGGAAACT GCGGCAGGGGGGGAAGCTGCGCCGTTTCGTGACGCAGGGAAGGACGGCATGCCGGAACGGGGCCTTGATTCCGTCCCGTT CCGGGTATGGAATGAGGCGCTTACTATTAAAACCATGCCTAACATTAACGATAACTTCCTCAAGTTGCAGGCGGGATATT TGTTCCCGGAAATAGGGCGCCGCGTGAATGCGTTTGCCGAATCCCATCCGGAGGCGGCCAAAAGGCTGATTCGCTGCGGC ATCGGCGATGTGACGGAGCCGCTTCCCATGGCGGCTATTGAAGCCATGCACCGGGCCGTGGATGATTTGTCCACTCATGA ACGTTTTCACGGCTATGGGCCGGAGCAGGGGTATTTCTGGCTGAGGGAGGCAATTGCCAAAAAAGCCTATCAGGCCCACG GCGTGCATGTGGAAGTGGATGAGATTTACGTGTCTGACGGAGCCAAATGCGACACGGGAAACATTCTGGATATTTTCGGG CCCGGCAACAGAATCGCCGTGCCGGATCCGGTTTATCCCGTGTATGTGGATACCAATGTCATGGCCGGGAATACCGGGAG TTCCAGCCCGGATGGTTCTTATGAAGGGCTGGTGTATCTGCCGTGCACTCCGGAAAATAATTTTGTGCCGCAATTGCCTG ATGAGCATGTGGATTTGATTTACCTGTGCTTCCCGAACAATCCTACCGGGGCCGTAGCTTCCCGGAATGAACTGCTGAAA TGGGTGGAATACGCCCGGGCGAACCGTGCCATTATCCTTTATGATTCCGCTTATGAGGCTTTCATACAGGATTCTTCCAT TCCCAGATCCATTTTTGAAATTCCCGGCGCGCGGGATTGCGCCATTGAGTTCCGTTCCTTCTCCAAGCAAGGAGGCTTTA CAGGGGTGCGCTGCGGTTATGTGGTGATTCCCAAGGAATTGCACGGATATGATTCCGAAGGGAACAAGGTTTCTATCAGC CGACTCTGGAGCCGCCGCACCAGCACGAAATTCAACGGCGCTTCCTATATTGTCCAGCGGGGTGCCGCGGCTTTGTTCAC CATGGAGGGCATGGCCCAGACTGCCGCGCTCATCAGCCATTACCTGGGGAATGCTTCGCTTCTGCTGAATGCCTGCCGTC AGGCGGGCATGCGCGTGTGGGGCGGGGAAAACGCCCCTTATGTATGGGTACAGTGTCCGGACGGTCTGGACAGCTGGCAA ATGTTTGACAAGATGCTGCATGAGGCGAATGTGGTTATTACGCCTGGTTCCGGTTTTGGTTCCAGGGGGGAAGGGTTCTT CCGCATTTCCGCGTTTAATTCACGGGAAAACGTGGATGAAGTCTGCCGCCGCATCCACAGCCTGTTTGCCAGATAG
Upstream 100 bases:
>100_bases CCGCGGACGTCAATGATTTCCATTTCATTCATGATCATAAGATTTCTTTTTGTCCTTTTTAGACAGGGAAACAGGCTTTC CCGTTCCGGAGAAGCATGTC
Downstream 100 bases:
>100_bases AAGGGCGTTTTCAGACAGATGTCCAGGCCGCGGTGCAAAACACCGCGGCCTGTGTATTTCTTTCCGGGTGGGTTGATGAC CGTGGCATTGTATTTCCTGC
Product: L,L-diaminopimelate aminotransferase
Products: NA
Alternate protein names: DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase [H]
Number of amino acids: Translated: 531; Mature: 530
Protein sequence:
>531_residues MSLEVPVSKAGLTQNGDEACRLLQGHDAPQNEEVPLLGIRLPVLRNFAGKKLRRIWQDRMSARCVDPQKGRSSRFYTAET AAGGEAAPFRDAGKDGMPERGLDSVPFRVWNEALTIKTMPNINDNFLKLQAGYLFPEIGRRVNAFAESHPEAAKRLIRCG IGDVTEPLPMAAIEAMHRAVDDLSTHERFHGYGPEQGYFWLREAIAKKAYQAHGVHVEVDEIYVSDGAKCDTGNILDIFG PGNRIAVPDPVYPVYVDTNVMAGNTGSSSPDGSYEGLVYLPCTPENNFVPQLPDEHVDLIYLCFPNNPTGAVASRNELLK WVEYARANRAIILYDSAYEAFIQDSSIPRSIFEIPGARDCAIEFRSFSKQGGFTGVRCGYVVIPKELHGYDSEGNKVSIS RLWSRRTSTKFNGASYIVQRGAAALFTMEGMAQTAALISHYLGNASLLLNACRQAGMRVWGGENAPYVWVQCPDGLDSWQ MFDKMLHEANVVITPGSGFGSRGEGFFRISAFNSRENVDEVCRRIHSLFAR
Sequences:
>Translated_531_residues MSLEVPVSKAGLTQNGDEACRLLQGHDAPQNEEVPLLGIRLPVLRNFAGKKLRRIWQDRMSARCVDPQKGRSSRFYTAET AAGGEAAPFRDAGKDGMPERGLDSVPFRVWNEALTIKTMPNINDNFLKLQAGYLFPEIGRRVNAFAESHPEAAKRLIRCG IGDVTEPLPMAAIEAMHRAVDDLSTHERFHGYGPEQGYFWLREAIAKKAYQAHGVHVEVDEIYVSDGAKCDTGNILDIFG PGNRIAVPDPVYPVYVDTNVMAGNTGSSSPDGSYEGLVYLPCTPENNFVPQLPDEHVDLIYLCFPNNPTGAVASRNELLK WVEYARANRAIILYDSAYEAFIQDSSIPRSIFEIPGARDCAIEFRSFSKQGGFTGVRCGYVVIPKELHGYDSEGNKVSIS RLWSRRTSTKFNGASYIVQRGAAALFTMEGMAQTAALISHYLGNASLLLNACRQAGMRVWGGENAPYVWVQCPDGLDSWQ MFDKMLHEANVVITPGSGFGSRGEGFFRISAFNSRENVDEVCRRIHSLFAR >Mature_530_residues SLEVPVSKAGLTQNGDEACRLLQGHDAPQNEEVPLLGIRLPVLRNFAGKKLRRIWQDRMSARCVDPQKGRSSRFYTAETA AGGEAAPFRDAGKDGMPERGLDSVPFRVWNEALTIKTMPNINDNFLKLQAGYLFPEIGRRVNAFAESHPEAAKRLIRCGI GDVTEPLPMAAIEAMHRAVDDLSTHERFHGYGPEQGYFWLREAIAKKAYQAHGVHVEVDEIYVSDGAKCDTGNILDIFGP GNRIAVPDPVYPVYVDTNVMAGNTGSSSPDGSYEGLVYLPCTPENNFVPQLPDEHVDLIYLCFPNNPTGAVASRNELLKW VEYARANRAIILYDSAYEAFIQDSSIPRSIFEIPGARDCAIEFRSFSKQGGFTGVRCGYVVIPKELHGYDSEGNKVSISR LWSRRTSTKFNGASYIVQRGAAALFTMEGMAQTAALISHYLGNASLLLNACRQAGMRVWGGENAPYVWVQCPDGLDSWQM FDKMLHEANVVITPGSGFGSRGEGFFRISAFNSRENVDEVCRRIHSLFAR
Specific function: Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate, a reaction that requires three enzymes in E.coli
COG id: COG0436
COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. LL-diaminopimelate aminotransferase subfamily [H]
Homologues:
Organism=Escherichia coli, GI1788722, Length=346, Percent_Identity=28.6127167630058, Blast_Score=122, Evalue=5e-29, Organism=Escherichia coli, GI1788627, Length=247, Percent_Identity=27.9352226720648, Blast_Score=77, Evalue=3e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004839 - InterPro: IPR019942 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00155 Aminotran_1_2 [H]
EC number: =2.6.1.83 [H]
Molecular weight: Translated: 58734; Mature: 58603
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLEVPVSKAGLTQNGDEACRLLQGHDAPQNEEVPLLGIRLPVLRNFAGKKLRRIWQDRM CCCCCCCHHCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHH SARCVDPQKGRSSRFYTAETAAGGEAAPFRDAGKDGMPERGLDSVPFRVWNEALTIKTMP HCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEEECC NINDNFLKLQAGYLFPEIGRRVNAFAESHPEAAKRLIRCGIGDVTEPLPMAAIEAMHRAV CCCCCEEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH DDLSTHERFHGYGPEQGYFWLREAIAKKAYQAHGVHVEVDEIYVSDGAKCDTGNILDIFG HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCEEEEEC PGNRIAVPDPVYPVYVDTNVMAGNTGSSSPDGSYEGLVYLPCTPENNFVPQLPDEHVDLI CCCEECCCCCCEEEEEECEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEE YLCFPNNPTGAVASRNELLKWVEYARANRAIILYDSAYEAFIQDSSIPRSIFEIPGARDC EEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCHHHHHCCCCCHH AIEFRSFSKQGGFTGVRCGYVVIPKELHGYDSEGNKVSISRLWSRRTSTKFNGASYIVQR HHHHHHHHCCCCCCEEEEEEEEECHHHCCCCCCCCEEEHHHHHHHHCCCCCCCHHHHHHC GAAALFTMEGMAQTAALISHYLGNASLLLNACRQAGMRVWGGENAPYVWVQCPDGLDSWQ CCHHEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEECCCCCCEEEEECCCCCCHHH MFDKMLHEANVVITPGSGFGSRGEGFFRISAFNSRENVDEVCRRIHSLFAR HHHHHHHHCCEEEECCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure SLEVPVSKAGLTQNGDEACRLLQGHDAPQNEEVPLLGIRLPVLRNFAGKKLRRIWQDRM CCCCCCHHCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHH SARCVDPQKGRSSRFYTAETAAGGEAAPFRDAGKDGMPERGLDSVPFRVWNEALTIKTMP HCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEEECC NINDNFLKLQAGYLFPEIGRRVNAFAESHPEAAKRLIRCGIGDVTEPLPMAAIEAMHRAV CCCCCEEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH DDLSTHERFHGYGPEQGYFWLREAIAKKAYQAHGVHVEVDEIYVSDGAKCDTGNILDIFG HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCEEEEEC PGNRIAVPDPVYPVYVDTNVMAGNTGSSSPDGSYEGLVYLPCTPENNFVPQLPDEHVDLI CCCEECCCCCCEEEEEECEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEE YLCFPNNPTGAVASRNELLKWVEYARANRAIILYDSAYEAFIQDSSIPRSIFEIPGARDC EEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCHHHHHCCCCCHH AIEFRSFSKQGGFTGVRCGYVVIPKELHGYDSEGNKVSISRLWSRRTSTKFNGASYIVQR HHHHHHHHCCCCCCEEEEEEEEECHHHCCCCCCCCEEEHHHHHHHHCCCCCCCHHHHHHC GAAALFTMEGMAQTAALISHYLGNASLLLNACRQAGMRVWGGENAPYVWVQCPDGLDSWQ CCHHEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEECCCCCCEEEEECCCCCCHHH MFDKMLHEANVVITPGSGFGSRGEGFFRISAFNSRENVDEVCRRIHSLFAR HHHHHHHHCCEEEECCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA