| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is trxA [C]
Identifier: 187735197
GI number: 187735197
Start: 816498
End: 816815
Strand: Reverse
Name: trxA [C]
Synonym: Amuc_0691
Alternate gene names: 187735197
Gene position: 816815-816498 (Counterclockwise)
Preceding gene: 187735198
Following gene: 187735196
Centisome position: 30.66
GC content: 50.94
Gene sequence:
>318_bases ATGGCAAACGTATTTTCTGAAGCAAATTTTGAGGATGAAGTTCTGAAGTCCGACATTCCTGTGCTTGTCGATTTCTGGGC TACATGGTGCGGTCCCTGCCGCATGATCGCCCCGATTATTGACCAGCTTTCTACGGAATTGGCCGGTAAGATCAAAGTGG GCAAAGTGGATGTGGACGCCAACAACGGACTGGCCGCCACCTATGGCGTGCGCACTATCCCCACTCTTCTGATTATCAAG GACGGGGAAATCATGGATACGATGGTGGGAGCTTCTTCCAAGGACGCTATCATGCAGCGTTTGCGTCCGTTCATGTAA
Upstream 100 bases:
>100_bases AAACGGCCGATGACGTTTCTGCTGAAGAGTCTTCCGATGATGGCGCCGATGCGGAAGAATAAGTGAACGTAATGATTGTT GAAATACTCTAAGCGGTACT
Downstream 100 bases:
>100_bases ATCATCGGACTGGTTTATTCATTCAAACCGGCCTGCTGCGGAATTTACTGCGGCAGGCCGGTTTTTTTACCGGGCAGCAT TATTAGAAAAGGACGGATGG
Product: thioredoxin
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 105; Mature: 104
Protein sequence:
>105_residues MANVFSEANFEDEVLKSDIPVLVDFWATWCGPCRMIAPIIDQLSTELAGKIKVGKVDVDANNGLAATYGVRTIPTLLIIK DGEIMDTMVGASSKDAIMQRLRPFM
Sequences:
>Translated_105_residues MANVFSEANFEDEVLKSDIPVLVDFWATWCGPCRMIAPIIDQLSTELAGKIKVGKVDVDANNGLAATYGVRTIPTLLIIK DGEIMDTMVGASSKDAIMQRLRPFM >Mature_104_residues ANVFSEANFEDEVLKSDIPVLVDFWATWCGPCRMIAPIIDQLSTELAGKIKVGKVDVDANNGLAATYGVRTIPTLLIIKD GEIMDTMVGASSKDAIMQRLRPFM
Specific function: Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions [H]
COG id: COG0526
COG function: function code OC; Thiol-disulfide isomerase and thioredoxins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Homo sapiens, GI21361403, Length=95, Percent_Identity=37.8947368421053, Blast_Score=89, Evalue=9e-19, Organism=Homo sapiens, GI21361657, Length=100, Percent_Identity=35, Blast_Score=68, Evalue=1e-12, Organism=Homo sapiens, GI5031973, Length=74, Percent_Identity=40.5405405405405, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI87082331, Length=97, Percent_Identity=50.5154639175258, Blast_Score=111, Evalue=1e-26, Organism=Escherichia coli, GI1788936, Length=83, Percent_Identity=45.7831325301205, Blast_Score=97, Evalue=2e-22, Organism=Escherichia coli, GI87081747, Length=94, Percent_Identity=31.9148936170213, Blast_Score=65, Evalue=1e-12, Organism=Caenorhabditis elegans, GI212646193, Length=92, Percent_Identity=35.8695652173913, Blast_Score=74, Evalue=1e-14, Organism=Caenorhabditis elegans, GI71998175, Length=71, Percent_Identity=47.887323943662, Blast_Score=72, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17509965, Length=78, Percent_Identity=38.4615384615385, Blast_Score=72, Evalue=7e-14, Organism=Caenorhabditis elegans, GI71980562, Length=98, Percent_Identity=33.6734693877551, Blast_Score=70, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17507705, Length=82, Percent_Identity=36.5853658536585, Blast_Score=69, Evalue=4e-13, Organism=Caenorhabditis elegans, GI71980565, Length=81, Percent_Identity=38.2716049382716, Blast_Score=69, Evalue=5e-13, Organism=Caenorhabditis elegans, GI115532380, Length=68, Percent_Identity=45.5882352941176, Blast_Score=67, Evalue=1e-12, Organism=Caenorhabditis elegans, GI115532378, Length=68, Percent_Identity=45.5882352941176, Blast_Score=67, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17556044, Length=99, Percent_Identity=32.3232323232323, Blast_Score=67, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17510299, Length=96, Percent_Identity=37.5, Blast_Score=67, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17544108, Length=68, Percent_Identity=44.1176470588235, Blast_Score=65, Evalue=6e-12, Organism=Caenorhabditis elegans, GI25144092, Length=85, Percent_Identity=36.4705882352941, Blast_Score=63, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17549970, Length=74, Percent_Identity=37.8378378378378, Blast_Score=62, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6323072, Length=92, Percent_Identity=41.304347826087, Blast_Score=72, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6321648, Length=87, Percent_Identity=36.7816091954023, Blast_Score=66, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6319925, Length=79, Percent_Identity=32.9113924050633, Blast_Score=60, Evalue=6e-11, Organism=Drosophila melanogaster, GI28573567, Length=97, Percent_Identity=35.0515463917526, Blast_Score=89, Evalue=5e-19, Organism=Drosophila melanogaster, GI24639826, Length=80, Percent_Identity=40, Blast_Score=80, Evalue=2e-16, Organism=Drosophila melanogaster, GI24664269, Length=72, Percent_Identity=48.6111111111111, Blast_Score=78, Evalue=9e-16, Organism=Drosophila melanogaster, GI21358065, Length=95, Percent_Identity=41.0526315789474, Blast_Score=77, Evalue=3e-15, Organism=Drosophila melanogaster, GI17648013, Length=74, Percent_Identity=43.2432432432432, Blast_Score=76, Evalue=5e-15, Organism=Drosophila melanogaster, GI24583090, Length=74, Percent_Identity=43.2432432432432, Blast_Score=76, Evalue=5e-15, Organism=Drosophila melanogaster, GI19921434, Length=74, Percent_Identity=41.8918918918919, Blast_Score=70, Evalue=3e-13, Organism=Drosophila melanogaster, GI24639068, Length=88, Percent_Identity=32.9545454545455, Blast_Score=66, Evalue=5e-12,
Paralogues:
None
Copy number: 3,500 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005746 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR017937 - InterPro: IPR013766 - InterPro: IPR012335 [H]
Pfam domain/function: PF00085 Thioredoxin [H]
EC number: NA
Molecular weight: Translated: 11491; Mature: 11359
Theoretical pI: Translated: 4.40; Mature: 4.40
Prosite motif: PS00194 THIOREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 5.7 %Met (Translated Protein) 7.6 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 4.8 %Met (Mature Protein) 6.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANVFSEANFEDEVLKSDIPVLVDFWATWCGPCRMIAPIIDQLSTELAGKIKVGKVDVDA CCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEEECEEEECC NNGLAATYGVRTIPTLLIIKDGEIMDTMVGASSKDAIMQRLRPFM CCCEEEECCCCCCCEEEEEECCCHHHHHHCCCCHHHHHHHHCCCC >Mature Secondary Structure ANVFSEANFEDEVLKSDIPVLVDFWATWCGPCRMIAPIIDQLSTELAGKIKVGKVDVDA CCCCCCCCCHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEEECEEEECC NNGLAATYGVRTIPTLLIIKDGEIMDTMVGASSKDAIMQRLRPFM CCCEEEECCCCCCCEEEEEECCCHHHHHHCCCCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Reduction reactions; participates in dithiol-disulfide exchange reactions [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7021558 [H]