| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is aceE [H]
Identifier: 17546319
GI number: 17546319
Start: 1717310
End: 1720000
Strand: Direct
Name: aceE [H]
Synonym: RSc1600
Alternate gene names: 17546319
Gene position: 1717310-1720000 (Clockwise)
Preceding gene: 17546313
Following gene: 17546320
Centisome position: 46.21
GC content: 64.51
Gene sequence:
>2691_bases ATGTCGGCCGTACCAGAGCAAGTCCTGGGCGCCACGCGCGCCAGCGACGTCGATCCCCAGGAAACCAAGGAATGGCTGGA GGCGCTGCAGGGCGTCATCGGCGCGGAAGGCCCGGACCGTGCAGCGTTCCTGCTCGACAAGCAGCTCGAGTACGCGCGCA TCAACGGCGTGACCTCGCCGCTGCATGCGGAAACCCCCTATATCAATACGATCCCGGTCGAGAACCAGGAGCGCATTCCC GGCGACCAGGAAATCGAGCACCGCATCCGCTCGTTCACGCGCTGGAACGCCATGGCGATGGTCCTGCGCGCCAACAAGGA CACCAACGTCGGCGGCCACATCTCGTCGTTCGCCTCGGCCGCCACGCTGTATGACGTCGGCTACAACCATTTCTGGCATG CCCCGTCGGACAAGCATGGCGGCGACATGGTCTTCGTGCAGGGTCACTCGGCACCGGGCGTGTATTCGCGCGCGTTCCTG CTGGGCCGCCTGTCCGAAGATCAGCTCGACAGCTTCCGCCAGGAAGTGGACGGCAAGGGCATCTCGTCGTATCCGCACCC GTGGCTGATGCCGGATTTCTGGCAGTTCCCGACCGTGTCGATGGGCCTGGGCCCGATCATGGCGATCTACCAGGCGCGCT TCACCAAGTACCTGGCCAGCCGCAGCCTGATCCAGAACTTCGAGAACCGCAAGGTCTGGGCCTTCCTGGGCGACGGCGAG ACCGACGAGCCGGAATCGCTGGGCGCGATCGGCATGGCCGGCCGCGAGAAGCTGGACAACCTGGTCTTCGTGATCAACTG CAACCTGCAGCGCCTGGACGGCCCGGTGCGCGGCAACGGCAAGATCATCCAGGAGCTGGAGAGCGAATTCCGCGGCGCCG GCTGGAACGTCATCAAGGTCATCTGGGGCAGCCGCTGGGATCAACTGCTCGCCCGCGACACCAAGGGCCTGCTGATGAGC CGCATGATGGAATGCGTCGACGGCGAGTACCAGACCTTCAAGTCGAAGAGCGGCGCCTATGTGCGTGAGTTCTTCTTCAA CACGCCGGAACTCAAGGCCATGGTGGCCGACTGGTCCGACGACGACATCTGGGCGCTGAACCGCGGTGGTCATGACCCGC ACAAGATCTTCGCCGCCTTCAAGTCGGCCACCGAGCACAAGGGCCAGCCGACCGTCATCCTCGCTAAGACCATCAAGGGC TATGGCATGGGCGAGGCCGGCGAAGCGATGAACATCGCCCACCAGCAGAAGAAGATGCCGGTGGACGCCATCCGCAAGCT GCGCGACCGCTTCAACATTCCGGTTGCCGACGATCAGCTCGAGCACGTTCCGTACGTCAAGTTCGAAGAAGGCTCGAAGG AACTGGAATACATGCGCCGCGCGCGCATGGACCTGGGCGGCTACCTGCCGGCCCGCCGCCAGAAGGCCGACGCGCTGCAA GTGCCGGCGCTGGCTGCGTTCGACGCGCTGCTCAAGGCCACTGGTGAAGGCCGCGAAGTGTCCACCACGATGGCCTTCGT GCGCATTTTGAACATCCTGCTGAAGGACAAGAACGTCGGCAAGCACGTCGTGCCCATCGTCCCGGATGAGTCGCGCACGT TCGGCATGGAAGGTCTGTTCCGCCAGGTCGGCATCTGGAACCAGGAAGGCCAGAAGTACGTGCCGCAGGACCACGACCAG CTGATGTTCTACAAGGAATCGCAGACGGGTCAGGTGCTGCAGGAGGGCATCAACGAAGCCGGCGCCATGTGCGACTGGAT CGCCGCCGCAACGTCGTACTCGACGCACGGCGTGGCGATGATCCCGTTCTACATCTACTACTCGATGTTCGGCATCCAGC GCATCGGCGACCTCTGCTGGGCCGCCGGCGACATGCGCTCGCGCGGCTTCCTGCTGGGCGGCACCGCAGGCCGCACCACG CTGAACGGCGAGGGTTTGCAGCACGAAGACGGCCACTCGCACGTCTACCACGCCGCCATCCCGAACTGCATCTCGTATGA CCCGACCTTCCAGTATGAACTGGCGGTCGTGATGCAGGACGGCCTGCGCCGGATGTACGTCGAGCAGGAAGACGTCTATT ACTACCTGACGGTGATGAACGAGAACTACGAGCACCCCGAAATGCCGGCGGGTGCCGAGGCCGACATCATCAAGGGCATG TACCTGTTCAAGAAGGGCGTCGAGAACAGCAACGCGCCGCGCGTGCAACTGCTGGGCTCGGGCACGATCTTCCGCGAGGT GATCGCCGCGGCCGAGCTGCTCAAGAAGGACTGGGGCGTCGAGTCCGATCTGTGGGGCTGCCCGAGCTTCACCGAGCTGG CCCGCGAAGGCAATGCCGCAGCGCGCTGGAACCTGCTGCACCCGACCGACGCGCCGCGCGAATCGCACGTCGAGAAGATG CTCAAGGGCGTGCGCGGCCCGGTCATTGCTTCGACCGACTACGTCCGCACCTTCGCCGAGCAGATCCGCGCCTTCGTGCC GCGCCGCTACGTGGTGCTGGGCACCGACGGCTTCGGCCGCTCGGACACCCGCGAAAAGCTGCGCCACTTCTTCGAGGTGG ATCGCTACTGGGTGACGGTCGCGTCGCTCAAGGCGCTCGCCGACGAAGGCGTGCTGCCGCGCGAAAAGGTGGCCGAGGCG CTCAAGAAGTACAACCTCGATCCCAACAAGCCCAACCCGATGACCGTATAA
Upstream 100 bases:
>100_bases GCAAAAGTCGGGCAGGCCTTGCTGCGCCGCGCGTTCGTGCAGCTTGCAAAAGGGCGCCCGCCTCAACAGACGCAACCCTT ATTGCACCAAGGAGACCGCC
Downstream 100 bases:
>100_bases CGGAGCCGCCGGGCGCGCTGCGTGCGTCCGGCCGGGCACCGGCCCCGCCAGGCTGCCTGCATAGTGCATTTGACGGCACG ATGCGGTAGCCTGCCGGGCG
Product: pyruvate dehydrogenase subunit E1
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 896; Mature: 895
Protein sequence:
>896_residues MSAVPEQVLGATRASDVDPQETKEWLEALQGVIGAEGPDRAAFLLDKQLEYARINGVTSPLHAETPYINTIPVENQERIP GDQEIEHRIRSFTRWNAMAMVLRANKDTNVGGHISSFASAATLYDVGYNHFWHAPSDKHGGDMVFVQGHSAPGVYSRAFL LGRLSEDQLDSFRQEVDGKGISSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFTKYLASRSLIQNFENRKVWAFLGDGE TDEPESLGAIGMAGREKLDNLVFVINCNLQRLDGPVRGNGKIIQELESEFRGAGWNVIKVIWGSRWDQLLARDTKGLLMS RMMECVDGEYQTFKSKSGAYVREFFFNTPELKAMVADWSDDDIWALNRGGHDPHKIFAAFKSATEHKGQPTVILAKTIKG YGMGEAGEAMNIAHQQKKMPVDAIRKLRDRFNIPVADDQLEHVPYVKFEEGSKELEYMRRARMDLGGYLPARRQKADALQ VPALAAFDALLKATGEGREVSTTMAFVRILNILLKDKNVGKHVVPIVPDESRTFGMEGLFRQVGIWNQEGQKYVPQDHDQ LMFYKESQTGQVLQEGINEAGAMCDWIAAATSYSTHGVAMIPFYIYYSMFGIQRIGDLCWAAGDMRSRGFLLGGTAGRTT LNGEGLQHEDGHSHVYHAAIPNCISYDPTFQYELAVVMQDGLRRMYVEQEDVYYYLTVMNENYEHPEMPAGAEADIIKGM YLFKKGVENSNAPRVQLLGSGTIFREVIAAAELLKKDWGVESDLWGCPSFTELAREGNAAARWNLLHPTDAPRESHVEKM LKGVRGPVIASTDYVRTFAEQIRAFVPRRYVVLGTDGFGRSDTREKLRHFFEVDRYWVTVASLKALADEGVLPREKVAEA LKKYNLDPNKPNPMTV
Sequences:
>Translated_896_residues MSAVPEQVLGATRASDVDPQETKEWLEALQGVIGAEGPDRAAFLLDKQLEYARINGVTSPLHAETPYINTIPVENQERIP GDQEIEHRIRSFTRWNAMAMVLRANKDTNVGGHISSFASAATLYDVGYNHFWHAPSDKHGGDMVFVQGHSAPGVYSRAFL LGRLSEDQLDSFRQEVDGKGISSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFTKYLASRSLIQNFENRKVWAFLGDGE TDEPESLGAIGMAGREKLDNLVFVINCNLQRLDGPVRGNGKIIQELESEFRGAGWNVIKVIWGSRWDQLLARDTKGLLMS RMMECVDGEYQTFKSKSGAYVREFFFNTPELKAMVADWSDDDIWALNRGGHDPHKIFAAFKSATEHKGQPTVILAKTIKG YGMGEAGEAMNIAHQQKKMPVDAIRKLRDRFNIPVADDQLEHVPYVKFEEGSKELEYMRRARMDLGGYLPARRQKADALQ VPALAAFDALLKATGEGREVSTTMAFVRILNILLKDKNVGKHVVPIVPDESRTFGMEGLFRQVGIWNQEGQKYVPQDHDQ LMFYKESQTGQVLQEGINEAGAMCDWIAAATSYSTHGVAMIPFYIYYSMFGIQRIGDLCWAAGDMRSRGFLLGGTAGRTT LNGEGLQHEDGHSHVYHAAIPNCISYDPTFQYELAVVMQDGLRRMYVEQEDVYYYLTVMNENYEHPEMPAGAEADIIKGM YLFKKGVENSNAPRVQLLGSGTIFREVIAAAELLKKDWGVESDLWGCPSFTELAREGNAAARWNLLHPTDAPRESHVEKM LKGVRGPVIASTDYVRTFAEQIRAFVPRRYVVLGTDGFGRSDTREKLRHFFEVDRYWVTVASLKALADEGVLPREKVAEA LKKYNLDPNKPNPMTV >Mature_895_residues SAVPEQVLGATRASDVDPQETKEWLEALQGVIGAEGPDRAAFLLDKQLEYARINGVTSPLHAETPYINTIPVENQERIPG DQEIEHRIRSFTRWNAMAMVLRANKDTNVGGHISSFASAATLYDVGYNHFWHAPSDKHGGDMVFVQGHSAPGVYSRAFLL GRLSEDQLDSFRQEVDGKGISSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFTKYLASRSLIQNFENRKVWAFLGDGET DEPESLGAIGMAGREKLDNLVFVINCNLQRLDGPVRGNGKIIQELESEFRGAGWNVIKVIWGSRWDQLLARDTKGLLMSR MMECVDGEYQTFKSKSGAYVREFFFNTPELKAMVADWSDDDIWALNRGGHDPHKIFAAFKSATEHKGQPTVILAKTIKGY GMGEAGEAMNIAHQQKKMPVDAIRKLRDRFNIPVADDQLEHVPYVKFEEGSKELEYMRRARMDLGGYLPARRQKADALQV PALAAFDALLKATGEGREVSTTMAFVRILNILLKDKNVGKHVVPIVPDESRTFGMEGLFRQVGIWNQEGQKYVPQDHDQL MFYKESQTGQVLQEGINEAGAMCDWIAAATSYSTHGVAMIPFYIYYSMFGIQRIGDLCWAAGDMRSRGFLLGGTAGRTTL NGEGLQHEDGHSHVYHAAIPNCISYDPTFQYELAVVMQDGLRRMYVEQEDVYYYLTVMNENYEHPEMPAGAEADIIKGMY LFKKGVENSNAPRVQLLGSGTIFREVIAAAELLKKDWGVESDLWGCPSFTELAREGNAAARWNLLHPTDAPRESHVEKML KGVRGPVIASTDYVRTFAEQIRAFVPRRYVVLGTDGFGRSDTREKLRHFFEVDRYWVTVASLKALADEGVLPREKVAEAL KKYNLDPNKPNPMTV
Specific function: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components:pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydroge
COG id: COG2609
COG function: function code C; Pyruvate dehydrogenase complex, dehydrogenase (E1) component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786304, Length=885, Percent_Identity=61.2429378531073, Blast_Score=1115, Evalue=0.0,
Paralogues:
None
Copy number: 1140 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 400 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 6,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004660 - InterPro: IPR009014 - InterPro: IPR015941 - InterPro: IPR005474 [H]
Pfam domain/function: PF00456 Transketolase_N [H]
EC number: =1.2.4.1 [H]
Molecular weight: Translated: 100647; Mature: 100516
Theoretical pI: Translated: 6.18; Mature: 6.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAVPEQVLGATRASDVDPQETKEWLEALQGVIGAEGPDRAAFLLDKQLEYARINGVTSP CCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCC LHAETPYINTIPVENQERIPGDQEIEHRIRSFTRWNAMAMVLRANKDTNVGGHISSFASA CCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHHHH ATLYDVGYNHFWHAPSDKHGGDMVFVQGHSAPGVYSRAFLLGRLSEDQLDSFRQEVDGKG HHHHHCCCCCEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCC ISSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFTKYLASRSLIQNFENRKVWAFLGDGE CCCCCCCCCCCCCCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC TDEPESLGAIGMAGREKLDNLVFVINCNLQRLDGPVRGNGKIIQELESEFRGAGWNVIKV CCCCHHCCCCCCCCHHHHCCEEEEEECCHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEE IWGSRWDQLLARDTKGLLMSRMMECVDGEYQTFKSKSGAYVREFFFNTPELKAMVADWSD ECCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHCCCCHHEEEEECCCC DDIWALNRGGHDPHKIFAAFKSATEHKGQPTVILAKTIKGYGMGEAGEAMNIAHQQKKMP CCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCC VDAIRKLRDRFNIPVADDQLEHVPYVKFEEGSKELEYMRRARMDLGGYLPARRQKADALQ HHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCHHCCCCHHC VPALAAFDALLKATGEGREVSTTMAFVRILNILLKDKNVGKHVVPIVPDESRTFGMEGLF CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHH RQVGIWNQEGQKYVPQDHDQLMFYKESQTGQVLQEGINEAGAMCDWIAAATSYSTHGVAM HHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH IPFYIYYSMFGIQRIGDLCWAAGDMRSRGFLLGGTAGRTTLNGEGLQHEDGHSHVYHAAI HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCEECCCCCCCCCCCCEEEECCC PNCISYDPTFQYELAVVMQDGLRRMYVEQEDVYYYLTVMNENYEHPEMPAGAEADIIKGM CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHH YLFKKGVENSNAPRVQLLGSGTIFREVIAAAELLKKDWGVESDLWGCPSFTELAREGNAA HHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCC ARWNLLHPTDAPRESHVEKMLKGVRGPVIASTDYVRTFAEQIRAFVPRRYVVLGTDGFGR EEEEECCCCCCCHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCC SDTREKLRHFFEVDRYWVTVASLKALADEGVLPREKVAEALKKYNLDPNKPNPMTV CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure SAVPEQVLGATRASDVDPQETKEWLEALQGVIGAEGPDRAAFLLDKQLEYARINGVTSP CCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCC LHAETPYINTIPVENQERIPGDQEIEHRIRSFTRWNAMAMVLRANKDTNVGGHISSFASA CCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHHHH ATLYDVGYNHFWHAPSDKHGGDMVFVQGHSAPGVYSRAFLLGRLSEDQLDSFRQEVDGKG HHHHHCCCCCEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCC ISSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFTKYLASRSLIQNFENRKVWAFLGDGE CCCCCCCCCCCCCCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC TDEPESLGAIGMAGREKLDNLVFVINCNLQRLDGPVRGNGKIIQELESEFRGAGWNVIKV CCCCHHCCCCCCCCHHHHCCEEEEEECCHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEE IWGSRWDQLLARDTKGLLMSRMMECVDGEYQTFKSKSGAYVREFFFNTPELKAMVADWSD ECCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHCCCCHHEEEEECCCC DDIWALNRGGHDPHKIFAAFKSATEHKGQPTVILAKTIKGYGMGEAGEAMNIAHQQKKMP CCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCC VDAIRKLRDRFNIPVADDQLEHVPYVKFEEGSKELEYMRRARMDLGGYLPARRQKADALQ HHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCHHCCCCHHC VPALAAFDALLKATGEGREVSTTMAFVRILNILLKDKNVGKHVVPIVPDESRTFGMEGLF CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHH RQVGIWNQEGQKYVPQDHDQLMFYKESQTGQVLQEGINEAGAMCDWIAAATSYSTHGVAM HHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH IPFYIYYSMFGIQRIGDLCWAAGDMRSRGFLLGGTAGRTTLNGEGLQHEDGHSHVYHAAI HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCEECCCCCCCCCCCCEEEECCC PNCISYDPTFQYELAVVMQDGLRRMYVEQEDVYYYLTVMNENYEHPEMPAGAEADIIKGM CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHH YLFKKGVENSNAPRVQLLGSGTIFREVIAAAELLKKDWGVESDLWGCPSFTELAREGNAA HHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCC ARWNLLHPTDAPRESHVEKMLKGVRGPVIASTDYVRTFAEQIRAFVPRRYVVLGTDGFGR EEEEECCCCCCCHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCC SDTREKLRHFFEVDRYWVTVASLKALADEGVLPREKVAEALKKYNLDPNKPNPMTV CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8021225 [H]