| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is pykA
Identifier: 170757030
GI number: 170757030
Start: 3676188
End: 3677945
Strand: Reverse
Name: pykA
Synonym: CLD_1136
Alternate gene names: 170757030
Gene position: 3677945-3676188 (Counterclockwise)
Preceding gene: 170757584
Following gene: 170756892
Centisome position: 92.92
GC content: 32.54
Gene sequence:
>1758_bases ATGCAAAAGACTAAAATGATATTTACAATAGGCCCTGCAAGCTCGACAGAAGAAATTGTATCAAAATTAATAGAAGCTGG AATGAGTGTATCAAGACACAATTTTTCTCACGGATCACATCCAGAACACAAAGAAAGAATGATGATGATTAAGAAATTAA GAGAAAAACATAACAAACACATAGCTATTATGTTAGACACCAAAGGACCAGAAATAAGAACAGGTAATTTTTCAGTGGAT AAAGTGGAATTAAAAGAAGGGGCAGAGTTTACAATATATTGTAGAGAAGACATAGTAGGTGATGAAACAAAATGTTCTAT TACTTATGATGAACTATATAAAGATGTAGTTAAAGGAAATAAAATACTGATAGATGATGGATTAGTAGAGCTAGAGGTTC AGTCAGTAGAAGATAATAAAATCCATACAGTAGTTAAAAATTCAGGAACTGTTTCAAATCACAAGGGAGTAAATGTTCCA GGAGTTTCAGTATCACTTCCAGCAGTTACTGAAAAAGATATAGAAGATTTAAAATTTGGATGTGAAGTAGGAGTAGATTT AATAAGTGCATCTTTTATAAGAAAAGCCTCTGATGTATTAGCTATAAGAAAAATATTGGAAGAAAATGGTGGAAATGAAA TACAGATAATCTCTAAGATAGAAAACCAAGAGGGCGTTGACAATATAGATGAGATAATAAAATTTTCTGATGGAATAATG GTAGCTAGAGGAGATATGGGAGTCGAAATTCCTATAGAAGAAGTTCCAATAGTACAAAAAAGAATAATAGAAAAATGTAA TAAGGCAGGTAAGCCTGTAATTACAGCAACTCAAATGTTAGATTCTATGATGAGAAATCCTAGACCAACAAGAGCTGAAG CCTCAGACATAGCCAATGCAATATTTGATGGAACAGATGCCATAATGTTAAGTGGAGAATCAGCAAATGGAAAATATCCA GTAGAAGCTGCAAGAACTATGTCTAGAATAGCTAAAACAGCAGAAGCAAAATTAAATTATGATGCTATATTAAATAAAAT GAGAGAAAGTCATATATTAAATGTTCCTAATGCTATAAGCTTATCAGCGTGTACTACAGCATCAGAATTAAATGCTACAG CTATAATCACAGCAACTCAAAGTGGGCATACTGCAAAAATGGTATCAAAATATAGACCACAATGCCCTATTATAGCAGTA ACACCAAATGAAATAGTTGCTAGAAAGTTAGCATTAAATTGTGGAGTAGTACCACTATTAACGGAAACATTTAATTCTAC AGATGAGCTTATAGATAAATCAGTTAATAAATCTTTAGAAGAAGGATATGTTAAAAATGGCGACTTAGTTGTCATAGCAG GAGGAATACCAGTGTCTTACTCAGGAACAACTAATATGCTAAAAGTTCACATAGTAGGAGATATCTTAGCCCAAGGAAGA GGTTCAGGAACTAGACCAACTTATGGGAATGTAAAGATAGTAAACAATCCTTCAGAAGCAGAAGATATAGTTGAAAGAGA TGACATATTAGTAGTTAAAAATTTAGATAGAAGATATATGACTATTTTAGATAGAGTATCAGGCATAGTGGCTGAAGAAG GTGGAATAACATCACACTTAGCTATAGAATGCATAGCAAGGGATATTCCATTTATATGTAATGCAGGTGGAGCTATGGAT GTTTTAAAAACAGGAACATATGTAACACTTGATACAGTAAGAGGAATAGTATACAACGGAAGAGCTAATATAGTTTAA
Upstream 100 bases:
>100_bases AGCTTTAGCAGTAGAAAGAAGTTTTGACCAAGAATTATATGACATAGCAACTATTTTATCCAAATAATGTAAAAGTTTAG ATTTTGAGGAGGCGTTTTAT
Downstream 100 bases:
>100_bases ATATAATAAAAATTATATACTAAAATAAAGAGTCCATTTAGAAAAATCAAACTTTCTATTCGGGCTCTTAAATTTTATTT TCTTGACACCAAAGTATTAA
Product: pyruvate kinase
Products: NA
Alternate protein names: PK [H]
Number of amino acids: Translated: 585; Mature: 585
Protein sequence:
>585_residues MQKTKMIFTIGPASSTEEIVSKLIEAGMSVSRHNFSHGSHPEHKERMMMIKKLREKHNKHIAIMLDTKGPEIRTGNFSVD KVELKEGAEFTIYCREDIVGDETKCSITYDELYKDVVKGNKILIDDGLVELEVQSVEDNKIHTVVKNSGTVSNHKGVNVP GVSVSLPAVTEKDIEDLKFGCEVGVDLISASFIRKASDVLAIRKILEENGGNEIQIISKIENQEGVDNIDEIIKFSDGIM VARGDMGVEIPIEEVPIVQKRIIEKCNKAGKPVITATQMLDSMMRNPRPTRAEASDIANAIFDGTDAIMLSGESANGKYP VEAARTMSRIAKTAEAKLNYDAILNKMRESHILNVPNAISLSACTTASELNATAIITATQSGHTAKMVSKYRPQCPIIAV TPNEIVARKLALNCGVVPLLTETFNSTDELIDKSVNKSLEEGYVKNGDLVVIAGGIPVSYSGTTNMLKVHIVGDILAQGR GSGTRPTYGNVKIVNNPSEAEDIVERDDILVVKNLDRRYMTILDRVSGIVAEEGGITSHLAIECIARDIPFICNAGGAMD VLKTGTYVTLDTVRGIVYNGRANIV
Sequences:
>Translated_585_residues MQKTKMIFTIGPASSTEEIVSKLIEAGMSVSRHNFSHGSHPEHKERMMMIKKLREKHNKHIAIMLDTKGPEIRTGNFSVD KVELKEGAEFTIYCREDIVGDETKCSITYDELYKDVVKGNKILIDDGLVELEVQSVEDNKIHTVVKNSGTVSNHKGVNVP GVSVSLPAVTEKDIEDLKFGCEVGVDLISASFIRKASDVLAIRKILEENGGNEIQIISKIENQEGVDNIDEIIKFSDGIM VARGDMGVEIPIEEVPIVQKRIIEKCNKAGKPVITATQMLDSMMRNPRPTRAEASDIANAIFDGTDAIMLSGESANGKYP VEAARTMSRIAKTAEAKLNYDAILNKMRESHILNVPNAISLSACTTASELNATAIITATQSGHTAKMVSKYRPQCPIIAV TPNEIVARKLALNCGVVPLLTETFNSTDELIDKSVNKSLEEGYVKNGDLVVIAGGIPVSYSGTTNMLKVHIVGDILAQGR GSGTRPTYGNVKIVNNPSEAEDIVERDDILVVKNLDRRYMTILDRVSGIVAEEGGITSHLAIECIARDIPFICNAGGAMD VLKTGTYVTLDTVRGIVYNGRANIV >Mature_585_residues MQKTKMIFTIGPASSTEEIVSKLIEAGMSVSRHNFSHGSHPEHKERMMMIKKLREKHNKHIAIMLDTKGPEIRTGNFSVD KVELKEGAEFTIYCREDIVGDETKCSITYDELYKDVVKGNKILIDDGLVELEVQSVEDNKIHTVVKNSGTVSNHKGVNVP GVSVSLPAVTEKDIEDLKFGCEVGVDLISASFIRKASDVLAIRKILEENGGNEIQIISKIENQEGVDNIDEIIKFSDGIM VARGDMGVEIPIEEVPIVQKRIIEKCNKAGKPVITATQMLDSMMRNPRPTRAEASDIANAIFDGTDAIMLSGESANGKYP VEAARTMSRIAKTAEAKLNYDAILNKMRESHILNVPNAISLSACTTASELNATAIITATQSGHTAKMVSKYRPQCPIIAV TPNEIVARKLALNCGVVPLLTETFNSTDELIDKSVNKSLEEGYVKNGDLVVIAGGIPVSYSGTTNMLKVHIVGDILAQGR GSGTRPTYGNVKIVNNPSEAEDIVERDDILVVKNLDRRYMTILDRVSGIVAEEGGITSHLAIECIARDIPFICNAGGAMD VLKTGTYVTLDTVRGIVYNGRANIV
Specific function: Glycolysis; final step. [C]
COG id: COG0469
COG function: function code G; Pyruvate kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pyruvate kinase family [H]
Homologues:
Organism=Homo sapiens, GI33286422, Length=487, Percent_Identity=45.5852156057495, Blast_Score=395, Evalue=1e-110, Organism=Homo sapiens, GI33286420, Length=487, Percent_Identity=45.5852156057495, Blast_Score=395, Evalue=1e-110, Organism=Homo sapiens, GI33286418, Length=487, Percent_Identity=45.9958932238193, Blast_Score=391, Evalue=1e-109, Organism=Homo sapiens, GI10835121, Length=489, Percent_Identity=43.558282208589, Blast_Score=379, Evalue=1e-105, Organism=Homo sapiens, GI32967597, Length=489, Percent_Identity=43.558282208589, Blast_Score=378, Evalue=1e-105, Organism=Homo sapiens, GI310128732, Length=288, Percent_Identity=49.3055555555556, Blast_Score=249, Evalue=7e-66, Organism=Homo sapiens, GI310128730, Length=288, Percent_Identity=49.3055555555556, Blast_Score=249, Evalue=7e-66, Organism=Homo sapiens, GI310128736, Length=236, Percent_Identity=46.6101694915254, Blast_Score=187, Evalue=3e-47, Organism=Homo sapiens, GI310128734, Length=236, Percent_Identity=46.6101694915254, Blast_Score=187, Evalue=3e-47, Organism=Homo sapiens, GI310128738, Length=215, Percent_Identity=46.9767441860465, Blast_Score=171, Evalue=2e-42, Organism=Escherichia coli, GI1787965, Length=473, Percent_Identity=49.8942917547569, Blast_Score=457, Evalue=1e-129, Organism=Escherichia coli, GI1788160, Length=477, Percent_Identity=39.622641509434, Blast_Score=314, Evalue=1e-86, Organism=Caenorhabditis elegans, GI17544584, Length=485, Percent_Identity=44.7422680412371, Blast_Score=372, Evalue=1e-103, Organism=Caenorhabditis elegans, GI71984413, Length=486, Percent_Identity=42.3868312757202, Blast_Score=343, Evalue=2e-94, Organism=Caenorhabditis elegans, GI17506829, Length=486, Percent_Identity=42.3868312757202, Blast_Score=343, Evalue=2e-94, Organism=Caenorhabditis elegans, GI71984406, Length=486, Percent_Identity=42.3868312757202, Blast_Score=343, Evalue=2e-94, Organism=Caenorhabditis elegans, GI17506831, Length=486, Percent_Identity=42.3868312757202, Blast_Score=342, Evalue=4e-94, Organism=Saccharomyces cerevisiae, GI6319279, Length=489, Percent_Identity=43.9672801635992, Blast_Score=353, Evalue=3e-98, Organism=Saccharomyces cerevisiae, GI6324923, Length=494, Percent_Identity=40.8906882591093, Blast_Score=346, Evalue=7e-96, Organism=Drosophila melanogaster, GI24648964, Length=482, Percent_Identity=44.8132780082988, Blast_Score=385, Evalue=1e-107, Organism=Drosophila melanogaster, GI28571814, Length=482, Percent_Identity=44.8132780082988, Blast_Score=384, Evalue=1e-106, Organism=Drosophila melanogaster, GI24648966, Length=420, Percent_Identity=47.8571428571429, Blast_Score=354, Evalue=8e-98, Organism=Drosophila melanogaster, GI24581235, Length=481, Percent_Identity=35.1351351351351, Blast_Score=280, Evalue=2e-75, Organism=Drosophila melanogaster, GI24646914, Length=286, Percent_Identity=47.5524475524476, Blast_Score=236, Evalue=3e-62,
Paralogues:
None
Copy number: 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 124 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001697 - InterPro: IPR015813 - InterPro: IPR011037 - InterPro: IPR015794 - InterPro: IPR015793 - InterPro: IPR015795 - InterPro: IPR015806 [H]
Pfam domain/function: PF00224 PK; PF02887 PK_C [H]
EC number: =2.7.1.40 [H]
Molecular weight: Translated: 63650; Mature: 63650
Theoretical pI: Translated: 5.70; Mature: 5.70
Prosite motif: PS00110 PYRUVATE_KINASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKTKMIFTIGPASSTEEIVSKLIEAGMSVSRHNFSHGSHPEHKERMMMIKKLREKHNKH CCCCEEEEEECCCCCHHHHHHHHHHCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHCCCE IAIMLDTKGPEIRTGNFSVDKVELKEGAEFTIYCREDIVGDETKCSITYDELYKDVVKGN EEEEEECCCCEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEEHHHHHHHHHCCC KILIDDGLVELEVQSVEDNKIHTVVKNSGTVSNHKGVNVPGVSVSLPAVTEKDIEDLKFG EEEEECCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHH CEVGVDLISASFIRKASDVLAIRKILEENGGNEIQIISKIENQEGVDNIDEIIKFSDGIM HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHCCCEE VARGDMGVEIPIEEVPIVQKRIIEKCNKAGKPVITATQMLDSMMRNPRPTRAEASDIANA EEECCCCCCCCHHHCCHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCCCCHHHHHHH IFDGTDAIMLSGESANGKYPVEAARTMSRIAKTAEAKLNYDAILNKMRESHILNVPNAIS HHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEE LSACTTASELNATAIITATQSGHTAKMVSKYRPQCPIIAVTPNEIVARKLALNCGVVPLL EHHHCCHHHCCCEEEEEECCCCCHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCCHHHH TETFNSTDELIDKSVNKSLEEGYVKNGDLVVIAGGIPVSYSGTTNMLKVHIVGDILAQGR HHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCEEEEEEEEHHHHCCC GSGTRPTYGNVKIVNNPSEAEDIVERDDILVVKNLDRRYMTILDRVSGIVAEEGGITSHL CCCCCCCCCCEEEECCCCHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHEECCCCCCHHH AIECIARDIPFICNAGGAMDVLKTGTYVTLDTVRGIVYNGRANIV HHHHHHHCCCEEECCCCCHHHHHCCCEEEEECCCCEEECCCCCCC >Mature Secondary Structure MQKTKMIFTIGPASSTEEIVSKLIEAGMSVSRHNFSHGSHPEHKERMMMIKKLREKHNKH CCCCEEEEEECCCCCHHHHHHHHHHCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHCCCE IAIMLDTKGPEIRTGNFSVDKVELKEGAEFTIYCREDIVGDETKCSITYDELYKDVVKGN EEEEEECCCCEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEEHHHHHHHHHCCC KILIDDGLVELEVQSVEDNKIHTVVKNSGTVSNHKGVNVPGVSVSLPAVTEKDIEDLKFG EEEEECCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHH CEVGVDLISASFIRKASDVLAIRKILEENGGNEIQIISKIENQEGVDNIDEIIKFSDGIM HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHCCCEE VARGDMGVEIPIEEVPIVQKRIIEKCNKAGKPVITATQMLDSMMRNPRPTRAEASDIANA EEECCCCCCCCHHHCCHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCCCCHHHHHHH IFDGTDAIMLSGESANGKYPVEAARTMSRIAKTAEAKLNYDAILNKMRESHILNVPNAIS HHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEE LSACTTASELNATAIITATQSGHTAKMVSKYRPQCPIIAVTPNEIVARKLALNCGVVPLL EHHHCCHHHCCCEEEEEECCCCCHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCCHHHH TETFNSTDELIDKSVNKSLEEGYVKNGDLVVIAGGIPVSYSGTTNMLKVHIVGDILAQGR HHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCEEEEEEEEHHHHCCC GSGTRPTYGNVKIVNNPSEAEDIVERDDILVVKNLDRRYMTILDRVSGIVAEEGGITSHL CCCCCCCCCCEEEECCCCHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHEECCCCCCHHH AIECIARDIPFICNAGGAMDVLKTGTYVTLDTVRGIVYNGRANIV HHHHHHHCCCEEECCCCCHHHHHCCCEEEEECCCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11466286; 9625784 [H]