Definition Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence.
Accession NC_000914
Length 536,165

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The map label for this gene is bxrF

Identifier: 16519913

GI number: 16519913

Start: 244618

End: 246882

Strand: Direct

Name: bxrF

Synonym: NGR_a01920

Alternate gene names: 16519913

Gene position: 244618-246882 (Clockwise)

Preceding gene: 16519914

Following gene: 16519911

Centisome position: 45.62

GC content: 61.55

Gene sequence:

>2265_bases
ATGGGCGGGTTAAGCGCGATGCAGCGACGCATCGACTTGTTAGTGGAGGGCGGTGATGAATACGACGCTTGTTCTCATTT
CAGGAGCGTTGTGATGTGGGACAAGAGCCTGCGGCCACCGCTTCCGCGTGCCGAGCCACGGATCCGTGTCCTTCATGACG
ACGTCACTGTCGACCGGTATGGATGGCTTCGCGACCGAGAGAATCCCGACGTCCGCGCGTATCTTGAAGCCGAAAACAGC
TATGCAGAGCAAGCGACAGCTCACCTGAGAAGACTAAAGACTGAGCTCATCGCCGAGATCGAAGGGCGTCAGCCTTGCGA
GGGCGCCACGCCACCGTTCCAAGTTGGGCCGTTTGACTACTTCCAGGGACACGAGCGGGGGCTGCCTCATCCGGTATGGT
GGCGGCGGCCGGTGACCGGAGGTTCGGCCGAGCTTGTCCTCGACCCGAACGCGATACCCGGGGCCGACGTCTTCTATTGG
CTCGGTGTGTTCGAGCCGAGTGACGACGGGCGTTACCTAGCGTTTAGCGTTGATCTCATCGGTGCCGAGCGCTACGAGTT
AAGGGTGCGAGACATGTCCGACGGACGCGATGTCTGGCGAGACGCGGGTAGCGTCGGGCAGGTTGTCTGGGCCGCCGACA
ATCATACGCTCTTTTTCACACGGGAGCGGCCTGACCGGCGGCAACATCATCAGATCGTCCGCTTGAACGTCGGGCGAGGA
AACTCGGAGGTGGTGTTCGAGGAGGCAAACGAGCGACTGGCGGTGCTGGTTCGGCGTTCTCAGAGCGGCGCTTGGTTATT
CCTCGACGTACTTACTACCTCGGACATGTCCTCTTACGTTCAGCGAGGGGCTGCAGAGGTGTGGTGTCTTCCCGCCGACG
AGCCGGGAGGTCAGTGGCGCCGGATCGTGATGCGTGAACTGGGGCACCAGATCTATGCCGAGCACTGGTACGACAGGTTC
CTGTTTCGGGTGGATGATGCTGGACCGTACTGGCGGCTGGTGAGTGCGCCGATAGATGATCCCTCACCGTCGCGGTGGGA
GGAGGTCGTGCCGCATCGAGCGGGCGTGACGATCGACGAGATCCACGTGCTCGAACAGCACTTGGTCCTCCTGGAACGAG
AAGGCCTCCGTCCTCGCCTGATCTCGCGTAATCGAAGCGGGCGGGTTGGCGCTGTGATCGTTCCCGACGAGCCGAGCTGC
ACTATAAGGGTCGGCCTGTCGGCCGGTGGTTGCTATTCGGCCGCACGACATCCGTTCCGAAGCTCGAAGTTGACCTACTC
GGTTAGCTCGTTTGTGACGCCCGACACCTTCATCGAGCATGATTTCGCCAACGACCGATCGGTGGTCCTGTGCGAGGCCC
GCGTTCCCGGGTATGATGCCACTCAATACCTTGCAACGGTCGTAATGGCAGAGGCTGAAGACGGGGTGCAGGTCCCGATC
TCGTTGGTCGCGCGGCGCGATCGAACGAGCCCTGGACCAGTGTTATTGAGTGTGTACGGCTGCTACGGGATACCGAGATT
GCCCTCGTTCCTCGCTTGGCCCTCTTCCATGACGGCGCGTTTGAGCCTGCTCGACCGCGAAGTAGCTTTCGGCATCGTGC
ACGTGCGAGGGGGTGGCGAGCTCGGACGCCCATGGCACGACGCGGCTACCCGCGACCAAAAGCGCATTACTCACACAGAT
CTCATCTCCGCTACCGAGGGGCTTATTGAGCGTGGGTTCGCCACCCGCGACGGCGTCGTTATTGAGGGAAAGAGTGGTGG
CGGGGGTACGGTGCTTGCAACGGCCGTCTTTCGGCCCAACTTGTTCCGCGCCGTGGTTGCCGAGGTCCCACTGGCCGACA
TCATAGATACCCAGCTGGACTCGACAATGCCGTACACGCTAAAGGAAACGGCAGAGTATGGAGATCCCCAGGACGCCTAC
GAGTATCGGTATCTGCGCAGCTACGACCCGTATTACAACCTCAGCCCCGAGCGATCTCTTCCACCTACATACGTCGACGC
CGCGCTCGACGATGGCCAAGTGATCTATTACCAACCTGCTCGTTACGTGGCGCAGCGTCGGTCCTGCGCGACCGATCGCG
ACCCCGATCTTGTCTTCCGCATCCGGATGGTGGGCGGACACAGCGGCCCGTCACATGGGCCTGGCATAGCGGAACAAGCA
GCTTTTCGCATGGCCTGGGTTCTCGACCAGCTCCGAAGTCACGCTCCGCCCCCATCAAGGAAGGCGCGCTCCGCCGCCAG
AAGGTCCACCGATCCAGTGAGATAG

Upstream 100 bases:

>100_bases
ACCTCCTTTGACAACTGACGAGCAGACGCTTCGACGTGGTCTGGACATCCTGCACAAATCTGTGGCCGCAAGCATCTAAA
GCGGATCGCGACTCCGGTTC

Downstream 100 bases:

>100_bases
TGGGCTGTGTCACTGTAGCTGGAGTGGCCGAGATAGGTGGCAGCAACGGCAGCAGCGCCAGGGCGTTGGCGCGTTGTTGA
TGCTCAGGCGGGTCACGGCA

Product: S9A-type peptidase BxrF

Products: Hydrolyzed protein [C]

Alternate protein names: NA

Number of amino acids: Translated: 754; Mature: 753

Protein sequence:

>754_residues
MGGLSAMQRRIDLLVEGGDEYDACSHFRSVVMWDKSLRPPLPRAEPRIRVLHDDVTVDRYGWLRDRENPDVRAYLEAENS
YAEQATAHLRRLKTELIAEIEGRQPCEGATPPFQVGPFDYFQGHERGLPHPVWWRRPVTGGSAELVLDPNAIPGADVFYW
LGVFEPSDDGRYLAFSVDLIGAERYELRVRDMSDGRDVWRDAGSVGQVVWAADNHTLFFTRERPDRRQHHQIVRLNVGRG
NSEVVFEEANERLAVLVRRSQSGAWLFLDVLTTSDMSSYVQRGAAEVWCLPADEPGGQWRRIVMRELGHQIYAEHWYDRF
LFRVDDAGPYWRLVSAPIDDPSPSRWEEVVPHRAGVTIDEIHVLEQHLVLLEREGLRPRLISRNRSGRVGAVIVPDEPSC
TIRVGLSAGGCYSAARHPFRSSKLTYSVSSFVTPDTFIEHDFANDRSVVLCEARVPGYDATQYLATVVMAEAEDGVQVPI
SLVARRDRTSPGPVLLSVYGCYGIPRLPSFLAWPSSMTARLSLLDREVAFGIVHVRGGGELGRPWHDAATRDQKRITHTD
LISATEGLIERGFATRDGVVIEGKSGGGGTVLATAVFRPNLFRAVVAEVPLADIIDTQLDSTMPYTLKETAEYGDPQDAY
EYRYLRSYDPYYNLSPERSLPPTYVDAALDDGQVIYYQPARYVAQRRSCATDRDPDLVFRIRMVGGHSGPSHGPGIAEQA
AFRMAWVLDQLRSHAPPPSRKARSAARRSTDPVR

Sequences:

>Translated_754_residues
MGGLSAMQRRIDLLVEGGDEYDACSHFRSVVMWDKSLRPPLPRAEPRIRVLHDDVTVDRYGWLRDRENPDVRAYLEAENS
YAEQATAHLRRLKTELIAEIEGRQPCEGATPPFQVGPFDYFQGHERGLPHPVWWRRPVTGGSAELVLDPNAIPGADVFYW
LGVFEPSDDGRYLAFSVDLIGAERYELRVRDMSDGRDVWRDAGSVGQVVWAADNHTLFFTRERPDRRQHHQIVRLNVGRG
NSEVVFEEANERLAVLVRRSQSGAWLFLDVLTTSDMSSYVQRGAAEVWCLPADEPGGQWRRIVMRELGHQIYAEHWYDRF
LFRVDDAGPYWRLVSAPIDDPSPSRWEEVVPHRAGVTIDEIHVLEQHLVLLEREGLRPRLISRNRSGRVGAVIVPDEPSC
TIRVGLSAGGCYSAARHPFRSSKLTYSVSSFVTPDTFIEHDFANDRSVVLCEARVPGYDATQYLATVVMAEAEDGVQVPI
SLVARRDRTSPGPVLLSVYGCYGIPRLPSFLAWPSSMTARLSLLDREVAFGIVHVRGGGELGRPWHDAATRDQKRITHTD
LISATEGLIERGFATRDGVVIEGKSGGGGTVLATAVFRPNLFRAVVAEVPLADIIDTQLDSTMPYTLKETAEYGDPQDAY
EYRYLRSYDPYYNLSPERSLPPTYVDAALDDGQVIYYQPARYVAQRRSCATDRDPDLVFRIRMVGGHSGPSHGPGIAEQA
AFRMAWVLDQLRSHAPPPSRKARSAARRSTDPVR
>Mature_753_residues
GGLSAMQRRIDLLVEGGDEYDACSHFRSVVMWDKSLRPPLPRAEPRIRVLHDDVTVDRYGWLRDRENPDVRAYLEAENSY
AEQATAHLRRLKTELIAEIEGRQPCEGATPPFQVGPFDYFQGHERGLPHPVWWRRPVTGGSAELVLDPNAIPGADVFYWL
GVFEPSDDGRYLAFSVDLIGAERYELRVRDMSDGRDVWRDAGSVGQVVWAADNHTLFFTRERPDRRQHHQIVRLNVGRGN
SEVVFEEANERLAVLVRRSQSGAWLFLDVLTTSDMSSYVQRGAAEVWCLPADEPGGQWRRIVMRELGHQIYAEHWYDRFL
FRVDDAGPYWRLVSAPIDDPSPSRWEEVVPHRAGVTIDEIHVLEQHLVLLEREGLRPRLISRNRSGRVGAVIVPDEPSCT
IRVGLSAGGCYSAARHPFRSSKLTYSVSSFVTPDTFIEHDFANDRSVVLCEARVPGYDATQYLATVVMAEAEDGVQVPIS
LVARRDRTSPGPVLLSVYGCYGIPRLPSFLAWPSSMTARLSLLDREVAFGIVHVRGGGELGRPWHDAATRDQKRITHTDL
ISATEGLIERGFATRDGVVIEGKSGGGGTVLATAVFRPNLFRAVVAEVPLADIIDTQLDSTMPYTLKETAEYGDPQDAYE
YRYLRSYDPYYNLSPERSLPPTYVDAALDDGQVIYYQPARYVAQRRSCATDRDPDLVFRIRMVGGHSGPSHGPGIAEQAA
FRMAWVLDQLRSHAPPPSRKARSAARRSTDPVR

Specific function: Cleaves Peptide Bonds On The C-Terminal Side Of Lysyl And Argininyl Residues. [C]

COG id: COG1770

COG function: function code E; Protease II

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S9A family

Homologues:

Organism=Homo sapiens, GI41349456, Length=731, Percent_Identity=21.8878248974008, Blast_Score=139, Evalue=1e-32,
Organism=Homo sapiens, GI284172438, Length=571, Percent_Identity=21.8914185639229, Blast_Score=106, Evalue=8e-23,
Organism=Homo sapiens, GI284172431, Length=571, Percent_Identity=21.8914185639229, Blast_Score=106, Evalue=8e-23,
Organism=Homo sapiens, GI284172420, Length=571, Percent_Identity=21.8914185639229, Blast_Score=106, Evalue=9e-23,
Organism=Homo sapiens, GI284172413, Length=571, Percent_Identity=21.8914185639229, Blast_Score=106, Evalue=9e-23,
Organism=Homo sapiens, GI70778815, Length=571, Percent_Identity=21.8914185639229, Blast_Score=106, Evalue=9e-23,
Organism=Homo sapiens, GI108860686, Length=265, Percent_Identity=28.3018867924528, Blast_Score=91, Evalue=4e-18,
Organism=Homo sapiens, GI108860692, Length=297, Percent_Identity=27.2727272727273, Blast_Score=90, Evalue=7e-18,
Organism=Escherichia coli, GI1788150, Length=701, Percent_Identity=29.6718972895863, Blast_Score=289, Evalue=3e-79,
Organism=Drosophila melanogaster, GI24583414, Length=692, Percent_Identity=22.1098265895954, Blast_Score=152, Evalue=6e-37,
Organism=Drosophila melanogaster, GI221510989, Length=720, Percent_Identity=22.5, Blast_Score=143, Evalue=5e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4QF_RHISN (P55627)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_444033.1
- ProteinModelPortal:   P55627
- MEROPS:   S09.010
- GeneID:   962412
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a01920
- HOGENOM:   HBG293434
- ProtClustDB:   CLSK506527
- GO:   GO:0006508
- InterPro:   IPR001375
- InterPro:   IPR002470
- InterPro:   IPR004106
- PANTHER:   PTHR11757
- PRINTS:   PR00862

Pfam domain/function: PF00326 Peptidase_S9; PF02897 Peptidase_S9_N; SSF50993 Peptidase_S9A_N

EC number: 3.4.21.83 [C]

Molecular weight: Translated: 84715; Mature: 84584

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: ACT_SITE 585-585 ACT_SITE 707-707

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGLSAMQRRIDLLVEGGDEYDACSHFRSVVMWDKSLRPPLPRAEPRIRVLHDDVTVDRY
CCCHHHHHHHHHEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCEECCC
GWLRDRENPDVRAYLEAENSYAEQATAHLRRLKTELIAEIEGRQPCEGATPPFQVGPFDY
CCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
FQGHERGLPHPVWWRRPVTGGSAELVLDPNAIPGADVFYWLGVFEPSDDGRYLAFSVDLI
HCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEE
GAERYELRVRDMSDGRDVWRDAGSVGQVVWAADNHTLFFTRERPDRRQHHQIVRLNVGRG
CCCEEEEEEECCCCCHHHHHCCCCCCEEEEEECCCEEEEECCCCCCCCCCEEEEEEECCC
NSEVVFEEANERLAVLVRRSQSGAWLFLDVLTTSDMSSYVQRGAAEVWCLPADEPGGQWR
CCEEEEECCCCEEEEEEEECCCCCEEEEEEECCCHHHHHHHCCCCEEEEECCCCCCHHHH
RIVMRELGHQIYAEHWYDRFLFRVDDAGPYWRLVSAPIDDPSPSRWEEVVPHRAGVTIDE
HHHHHHHHHHHHHHHHHHEEEEEECCCCCEEEEEECCCCCCCCCHHHHHCCCCCCCCHHH
IHVLEQHLVLLEREGLRPRLISRNRSGRVGAVIVPDEPSCTIRVGLSAGGCYSAARHPFR
HHHHHHHHHHHHCCCCCCHHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHCCCCC
SSKLTYSVSSFVTPDTFIEHDFANDRSVVLCEARVPGYDATQYLATVVMAEAEDGVQVPI
CCCEEEEHHHCCCCCHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCH
SLVARRDRTSPGPVLLSVYGCYGIPRLPSFLAWPSSMTARLSLLDREVAFGIVHVRGGGE
HHHHHCCCCCCCCEEEEEECCCCCCCCCHHHCCCCHHHHHHHHHHHEEEEEEEEEECCCC
LGRPWHDAATRDQKRITHTDLISATEGLIERGFATRDGVVIEGKSGGGGTVLATAVFRPN
CCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEEECCCH
LFRAVVAEVPLADIIDTQLDSTMPYTLKETAEYGDPQDAYEYRYLRSYDPYYNLSPERSL
HHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
PPTYVDAALDDGQVIYYQPARYVAQRRSCATDRDPDLVFRIRMVGGHSGPSHGPGIAEQA
CCHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHH
AFRMAWVLDQLRSHAPPPSRKARSAARRSTDPVR
HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure 
GGLSAMQRRIDLLVEGGDEYDACSHFRSVVMWDKSLRPPLPRAEPRIRVLHDDVTVDRY
CCHHHHHHHHHEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCEECCC
GWLRDRENPDVRAYLEAENSYAEQATAHLRRLKTELIAEIEGRQPCEGATPPFQVGPFDY
CCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
FQGHERGLPHPVWWRRPVTGGSAELVLDPNAIPGADVFYWLGVFEPSDDGRYLAFSVDLI
HCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEE
GAERYELRVRDMSDGRDVWRDAGSVGQVVWAADNHTLFFTRERPDRRQHHQIVRLNVGRG
CCCEEEEEEECCCCCHHHHHCCCCCCEEEEEECCCEEEEECCCCCCCCCCEEEEEEECCC
NSEVVFEEANERLAVLVRRSQSGAWLFLDVLTTSDMSSYVQRGAAEVWCLPADEPGGQWR
CCEEEEECCCCEEEEEEEECCCCCEEEEEEECCCHHHHHHHCCCCEEEEECCCCCCHHHH
RIVMRELGHQIYAEHWYDRFLFRVDDAGPYWRLVSAPIDDPSPSRWEEVVPHRAGVTIDE
HHHHHHHHHHHHHHHHHHEEEEEECCCCCEEEEEECCCCCCCCCHHHHHCCCCCCCCHHH
IHVLEQHLVLLEREGLRPRLISRNRSGRVGAVIVPDEPSCTIRVGLSAGGCYSAARHPFR
HHHHHHHHHHHHCCCCCCHHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHCCCCC
SSKLTYSVSSFVTPDTFIEHDFANDRSVVLCEARVPGYDATQYLATVVMAEAEDGVQVPI
CCCEEEEHHHCCCCCHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCH
SLVARRDRTSPGPVLLSVYGCYGIPRLPSFLAWPSSMTARLSLLDREVAFGIVHVRGGGE
HHHHHCCCCCCCCEEEEEECCCCCCCCCHHHCCCCHHHHHHHHHHHEEEEEEEEEECCCC
LGRPWHDAATRDQKRITHTDLISATEGLIERGFATRDGVVIEGKSGGGGTVLATAVFRPN
CCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEEECCCH
LFRAVVAEVPLADIIDTQLDSTMPYTLKETAEYGDPQDAYEYRYLRSYDPYYNLSPERSL
HHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
PPTYVDAALDDGQVIYYQPARYVAQRRSCATDRDPDLVFRIRMVGGHSGPSHGPGIAEQA
CCHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHH
AFRMAWVLDQLRSHAPPPSRKARSAARRSTDPVR
HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Ca2+ [C]

Kcat value (1/min): 11820 [C]

Specific activity: NA

Km value (mM): 0.23 {tosyl-Arg} 0.33 {N-benzyloxycarbonyl-Lys} 0.31 {N-benzyloxycarbonyl-Lys} 0.92 {benzoyl-Lys} 0.6 {N-benzoyl-Arg} 0.5 {benzoyl-Arg} 0.48 {benzoyl-Arg} 0.25 {benzoyl-Arg} 80 {acetyl-tyrosine} 0.47 {tosyl-Lys-methyl} [C]

Substrates: Protein; H2O [C]

Specific reaction: Protein + H2O = hydrolyzed protein [C]

General reaction: Peptide bond hydrolysis [C]

Inhibitor: Antipain; Aromaticamidines; Benzamidine; Co2+; DFP; Fe2+; Hg2+; L-Arginine; Leupeptin sulfhydryl agents, trypsin inhibitors, 1, 10-phenanthroline; p-Aminobenzamidine; Tosyl -Leuchloromethyl ketone; Zn2+ [C]

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424