| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is relA [H]
Identifier: 157961010
GI number: 157961010
Start: 1435005
End: 1437212
Strand: Direct
Name: relA [H]
Synonym: Spea_1182
Alternate gene names: 157961010
Gene position: 1435005-1437212 (Clockwise)
Preceding gene: 157961009
Following gene: 157961011
Centisome position: 27.73
GC content: 46.2
Gene sequence:
>2208_bases ATGGTATCTGTTCGTGAAGCACATTTTAGCGACCCTGATTTTCAACTTGAAGAATGGGTGCAACGTTATATTAGTGATGC TTCGGAAGCTCAAATTCTTTTGGCCTTAATTGAGCGGGTCGAACTGCTCGTGGGACAAAAGAAAGACGCGAACGTTACTG TCTTAAAACGTGCGCGCGAGATGATAGAAATTCTTGCGCCGCTGAATATGGATATTGAAACACTGCAGGCCGCCATCTTG TTTGTGGTGTTTGATGCTGGGCTCATTACTCAAGAAGATATTGAAGAAGAGTTTGGCGCTAAGCTAGCCGTGTTGGTGTC GAGTGTTGAGACCATGAACGCTATTGGCGCCCTGAAAGTTGATAATCAGACTCGTAGCGGCGAGCCGCAGATCGATAATA TTCGTAAGATGTTATTGGCGATGGTGGAAGATGTGCGCGCGGTGGTGATTAAACTTGCCGAACGCATCTGTTTACTTCGT GAGATTAAAAATGCCGATGAGGAGGTAAAAGTCCTTGTCGCCCGCGAGATTGCCGATATCTATGCGCCACTGGCTAACCG TCTTGGTATTGGTCAGCTTAAGTGGGAACTAGAGGATATCTCATTCCGTTACCTGCACCCGCAAACTTATAAAGATATCG CCAAGCAGCTCGATGGTAAGCGCCTCGATAGAGAAACCTTTATCGATGACTTCGTCAGCCAGTTGCAGGCGCGACTCGAT AAAGATCTGATCCGCGCAAAGGTCTACGGCCGCCCTAAACATATCTACAGTATCTGGAAGAAGATGAAGGGCAAACAGCT CAAATTTGATGAGCTGTTTGACGTGCGGGCCGTGCGTATCGTGACTGACCGCCTACAAGATTGTTACGGCGCATTAGGCG TAGTGCATACACTTTGGCACCATATTCCACGTGAATTTGATGACTACGTTGCAAACCCTAAGCCAAACGGTTACCAGTCT ATTCATACCGTGGTGGTTGGGCCTGAAGATAAAACAGTCGAAATTCAAATTCGCACCGAGCAGATGCATGAAGATGCTGA GCTTGGGGTTGCGGCGCACTGGAAATATAAAGAAGGTAGCGCCAGCGGTAAACAAAGCGGTTATGAAGAAAAGATTAATT GGCTGCGCAAAATCTTGCAGTGGCAAGAAGATGTGGCCGAAAGCGGTAACTTAGTCGATGAAGTTCGTAGTCAGGTATTT GAAGACCGTGTCTATGTGTTTACTCCAAGCGGCGAAGTGGTTGATTTGCCATTAGGCTCAACGGTACTGGATTTTGCTTA TTACATTCACTCTCATGTGGGTCATAAGTGTATCGGTGCCAAAGTTGATGGCCGCATCGTGCAATTTACTTATCAGGTTG AGACGGGCGAGCGCATAGAGATCATTACCTCTAAGCATCCTAATCCTAAGCGAGATTGGTTAAATCCCAACTTGGGCTAT ATTCGTACTTCTCGTGCAAGGTCAAAAATTCTGCACTGGTTTAAACAGCAAGATAGAGATAAAAATATCATTGCTGGGCG TGAGATGCTTGAAACCGAATTAACCAAGAGTCAGTTGCATATTAAAGATGCGCAATCTGCGGTTGAGCGATTTAATCTAG TTAGTATGGACGATCTGCTCGCGGGGATTGGTGGTGGTGATATTCGCCTTAACCAAGTGGTAAATCATGTTCAGAGTCGC CTGCGGACTAAAGAGCTCAGTGATGAAGAGGTGGTTGAAGATTTAGTCAAGAAGAGCCAAAGCAAGTCGGTTAAAAAGGC CAAAGGCCAAGTTGAGGTTAGCGGCGTTGGTAACTTGATGAGCCATATCGCTAAATGTTGTCAGCCCGTACCAGGCGATG AAATTTTTGGCTTTATTACTAAAGGCCGCGGTATTTCAGTACACAGAGCCGATTGTGACCAAGTTAAAGAGTTAGTTCGG GCCTCACCAGAGCGTTCAGTTGAAGTGGTGTGGGGCGAGAACTATTCCGGTGGCTATAAAATTCGCTTAAGTATTTTGGC TAATGACCGCTCAGGACTGCTGCGAGACTTAACCTCAGTGCTAGCGGCAGAGAAAACCCACGTGATGGCGATGAGTTCGA CCTCTGATGTGAAAACACAAACCGCCACCATAGAGTTAGAGCTTGAACTATATAATCTAGAGGGTTTATCAAAAGTGTTA TCCAAGATAAATCAGGTTGATGGGGTCATGCAGGCCAGAAGACTGTAA
Upstream 100 bases:
>100_bases ACAATAACTGCTGAATGACGAATATAGTGGGTATAAATTAAAAAGATATGGTTAAGCGGCTGTTAACCTCTATCTTGGGT ATGTAAAGGAATTAAATACG
Downstream 100 bases:
>100_bases CTTAAAGATAACGGCAACCATAAGGTTGCCGTTTTTATATGTAATTATTAATCGTGACTTTAGCGTGACAGCGTTAAAGC ACTGTATAGGAAAGTGGAAT
Product: (p)ppGpp synthetase I SpoT/RelA
Products: NA
Alternate protein names: (p)ppGpp synthase; ATP:GTP 3'-pyrophosphotransferase; ppGpp synthase I [H]
Number of amino acids: Translated: 735; Mature: 735
Protein sequence:
>735_residues MVSVREAHFSDPDFQLEEWVQRYISDASEAQILLALIERVELLVGQKKDANVTVLKRAREMIEILAPLNMDIETLQAAIL FVVFDAGLITQEDIEEEFGAKLAVLVSSVETMNAIGALKVDNQTRSGEPQIDNIRKMLLAMVEDVRAVVIKLAERICLLR EIKNADEEVKVLVAREIADIYAPLANRLGIGQLKWELEDISFRYLHPQTYKDIAKQLDGKRLDRETFIDDFVSQLQARLD KDLIRAKVYGRPKHIYSIWKKMKGKQLKFDELFDVRAVRIVTDRLQDCYGALGVVHTLWHHIPREFDDYVANPKPNGYQS IHTVVVGPEDKTVEIQIRTEQMHEDAELGVAAHWKYKEGSASGKQSGYEEKINWLRKILQWQEDVAESGNLVDEVRSQVF EDRVYVFTPSGEVVDLPLGSTVLDFAYYIHSHVGHKCIGAKVDGRIVQFTYQVETGERIEIITSKHPNPKRDWLNPNLGY IRTSRARSKILHWFKQQDRDKNIIAGREMLETELTKSQLHIKDAQSAVERFNLVSMDDLLAGIGGGDIRLNQVVNHVQSR LRTKELSDEEVVEDLVKKSQSKSVKKAKGQVEVSGVGNLMSHIAKCCQPVPGDEIFGFITKGRGISVHRADCDQVKELVR ASPERSVEVVWGENYSGGYKIRLSILANDRSGLLRDLTSVLAAEKTHVMAMSSTSDVKTQTATIELELELYNLEGLSKVL SKINQVDGVMQARRL
Sequences:
>Translated_735_residues MVSVREAHFSDPDFQLEEWVQRYISDASEAQILLALIERVELLVGQKKDANVTVLKRAREMIEILAPLNMDIETLQAAIL FVVFDAGLITQEDIEEEFGAKLAVLVSSVETMNAIGALKVDNQTRSGEPQIDNIRKMLLAMVEDVRAVVIKLAERICLLR EIKNADEEVKVLVAREIADIYAPLANRLGIGQLKWELEDISFRYLHPQTYKDIAKQLDGKRLDRETFIDDFVSQLQARLD KDLIRAKVYGRPKHIYSIWKKMKGKQLKFDELFDVRAVRIVTDRLQDCYGALGVVHTLWHHIPREFDDYVANPKPNGYQS IHTVVVGPEDKTVEIQIRTEQMHEDAELGVAAHWKYKEGSASGKQSGYEEKINWLRKILQWQEDVAESGNLVDEVRSQVF EDRVYVFTPSGEVVDLPLGSTVLDFAYYIHSHVGHKCIGAKVDGRIVQFTYQVETGERIEIITSKHPNPKRDWLNPNLGY IRTSRARSKILHWFKQQDRDKNIIAGREMLETELTKSQLHIKDAQSAVERFNLVSMDDLLAGIGGGDIRLNQVVNHVQSR LRTKELSDEEVVEDLVKKSQSKSVKKAKGQVEVSGVGNLMSHIAKCCQPVPGDEIFGFITKGRGISVHRADCDQVKELVR ASPERSVEVVWGENYSGGYKIRLSILANDRSGLLRDLTSVLAAEKTHVMAMSSTSDVKTQTATIELELELYNLEGLSKVL SKINQVDGVMQARRL >Mature_735_residues MVSVREAHFSDPDFQLEEWVQRYISDASEAQILLALIERVELLVGQKKDANVTVLKRAREMIEILAPLNMDIETLQAAIL FVVFDAGLITQEDIEEEFGAKLAVLVSSVETMNAIGALKVDNQTRSGEPQIDNIRKMLLAMVEDVRAVVIKLAERICLLR EIKNADEEVKVLVAREIADIYAPLANRLGIGQLKWELEDISFRYLHPQTYKDIAKQLDGKRLDRETFIDDFVSQLQARLD KDLIRAKVYGRPKHIYSIWKKMKGKQLKFDELFDVRAVRIVTDRLQDCYGALGVVHTLWHHIPREFDDYVANPKPNGYQS IHTVVVGPEDKTVEIQIRTEQMHEDAELGVAAHWKYKEGSASGKQSGYEEKINWLRKILQWQEDVAESGNLVDEVRSQVF EDRVYVFTPSGEVVDLPLGSTVLDFAYYIHSHVGHKCIGAKVDGRIVQFTYQVETGERIEIITSKHPNPKRDWLNPNLGY IRTSRARSKILHWFKQQDRDKNIIAGREMLETELTKSQLHIKDAQSAVERFNLVSMDDLLAGIGGGDIRLNQVVNHVQSR LRTKELSDEEVVEDLVKKSQSKSVKKAKGQVEVSGVGNLMSHIAKCCQPVPGDEIFGFITKGRGISVHRADCDQVKELVR ASPERSVEVVWGENYSGGYKIRLSILANDRSGLLRDLTSVLAAEKTHVMAMSSTSDVKTQTATIELELELYNLEGLSKVL SKINQVDGVMQARRL
Specific function: In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. This enzyme catalyzes the formation of pppGpp which i
COG id: COG0317
COG function: function code TK; Guanosine polyphosphate pyrophosphohydrolases/synthetases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ACT domain [H]
Homologues:
Organism=Escherichia coli, GI1789147, Length=741, Percent_Identity=58.5695006747638, Blast_Score=880, Evalue=0.0, Organism=Escherichia coli, GI1790082, Length=724, Percent_Identity=31.353591160221, Blast_Score=403, Evalue=1e-113,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR012675 - InterPro: IPR007685 - InterPro: IPR004811 - InterPro: IPR004095 - InterPro: IPR012676 [H]
Pfam domain/function: PF01842 ACT; PF04607 RelA_SpoT; PF02824 TGS [H]
EC number: =2.7.6.5 [H]
Molecular weight: Translated: 83272; Mature: 83272
Theoretical pI: Translated: 6.32; Mature: 6.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSVREAHFSDPDFQLEEWVQRYISDASEAQILLALIERVELLVGQKKDANVTVLKRARE CCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH MIEILAPLNMDIETLQAAILFVVFDAGLITQEDIEEEFGAKLAVLVSSVETMNAIGALKV HHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCEEEE DNQTRSGEPQIDNIRKMLLAMVEDVRAVVIKLAERICLLREIKNADEEVKVLVAREIADI CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH YAPLANRLGIGQLKWELEDISFRYLHPQTYKDIAKQLDGKRLDRETFIDDFVSQLQARLD HHHHHHCCCCCCEEEEEECCEEEEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH KDLIRAKVYGRPKHIYSIWKKMKGKQLKFDELFDVRAVRIVTDRLQDCYGALGVVHTLWH HHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HIPREFDDYVANPKPNGYQSIHTVVVGPEDKTVEIQIRTEQMHEDAELGVAAHWKYKEGS HCCHHHHHHCCCCCCCCCCEEEEEEECCCCCEEEEEEEHHHHCCHHHCCEEEEEEECCCC ASGKQSGYEEKINWLRKILQWQEDVAESGNLVDEVRSQVFEDRVYVFTPSGEVVDLPLGS CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEECCCCCEEECCCCH TVLDFAYYIHSHVGHKCIGAKVDGRIVQFTYQVETGERIEIITSKHPNPKRDWLNPNLGY HHHHHHHHHHHHCCCCEECCCCCCEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCC IRTSRARSKILHWFKQQDRDKNIIAGREMLETELTKSQLHIKDAQSAVERFNLVSMDDLL EECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH AGIGGGDIRLNQVVNHVQSRLRTKELSDEEVVEDLVKKSQSKSVKKAKGQVEVSGVGNLM HCCCCCCEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHH SHIAKCCQPVPGDEIFGFITKGRGISVHRADCDQVKELVRASPERSVEVVWGENYSGGYK HHHHHHCCCCCCCHHEEEEECCCCCEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCEE IRLSILANDRSGLLRDLTSVLAAEKTHVMAMSSTSDVKTQTATIELELELYNLEGLSKVL EEEEEEECCHHHHHHHHHHHHHHHHHHEEEECCCCCCEEEEEEEEEEEEEECHHHHHHHH SKINQVDGVMQARRL HHHHHHHHHHHHHCC >Mature Secondary Structure MVSVREAHFSDPDFQLEEWVQRYISDASEAQILLALIERVELLVGQKKDANVTVLKRARE CCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH MIEILAPLNMDIETLQAAILFVVFDAGLITQEDIEEEFGAKLAVLVSSVETMNAIGALKV HHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCEEEE DNQTRSGEPQIDNIRKMLLAMVEDVRAVVIKLAERICLLREIKNADEEVKVLVAREIADI CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH YAPLANRLGIGQLKWELEDISFRYLHPQTYKDIAKQLDGKRLDRETFIDDFVSQLQARLD HHHHHHCCCCCCEEEEEECCEEEEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH KDLIRAKVYGRPKHIYSIWKKMKGKQLKFDELFDVRAVRIVTDRLQDCYGALGVVHTLWH HHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HIPREFDDYVANPKPNGYQSIHTVVVGPEDKTVEIQIRTEQMHEDAELGVAAHWKYKEGS HCCHHHHHHCCCCCCCCCCEEEEEEECCCCCEEEEEEEHHHHCCHHHCCEEEEEEECCCC ASGKQSGYEEKINWLRKILQWQEDVAESGNLVDEVRSQVFEDRVYVFTPSGEVVDLPLGS CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEECCCCCEEECCCCH TVLDFAYYIHSHVGHKCIGAKVDGRIVQFTYQVETGERIEIITSKHPNPKRDWLNPNLGY HHHHHHHHHHHHCCCCEECCCCCCEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCC IRTSRARSKILHWFKQQDRDKNIIAGREMLETELTKSQLHIKDAQSAVERFNLVSMDDLL EECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH AGIGGGDIRLNQVVNHVQSRLRTKELSDEEVVEDLVKKSQSKSVKKAKGQVEVSGVGNLM HCCCCCCEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHH SHIAKCCQPVPGDEIFGFITKGRGISVHRADCDQVKELVRASPERSVEVVWGENYSGGYK HHHHHHCCCCCCCHHEEEEECCCCCEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCEE IRLSILANDRSGLLRDLTSVLAAEKTHVMAMSSTSDVKTQTATIELELELYNLEGLSKVL EEEEEEECCHHHHHHHHHHHHHHHHHHEEEECCCCCCEEEEEEEEEEEEEECHHHHHHHH SKINQVDGVMQARRL HHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]