Definition | Lactococcus lactis subsp. lactis Il1403, complete genome. |
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Accession | NC_002662 |
Length | 2,365,589 |
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The map label for this gene is hly
Identifier: 15672479
GI number: 15672479
Start: 497815
End: 498468
Strand: Reverse
Name: hly
Synonym: L97827
Alternate gene names: 15672479
Gene position: 498468-497815 (Counterclockwise)
Preceding gene: 15672485
Following gene: 15672477
Centisome position: 21.07
GC content: 37.92
Gene sequence:
>654_bases ATGGAAGAAACACAAGGTTCAAAAACCTATCAGATTCTCAATGAGATTTTCAATGCAGTTACTCATGGAGCAGGAACTGG TCTAGCAATTGCAGCATTAGTTCTCCTTGTCATTAAAGGTGCCGCATCTGGTTCTGCACTTGAAGTGGTTGCTTTTACAA TCTATGGAGCTTCGTTAGTCATTCTTTTTCTATGTTCAACTTTAGCGCACGGTTTACATTTTACTAAAGCAGTCAAAGTC TTTCGAGTTTTTGACCACAACGGAATTTTCTTTTTGATTGCTGGAACTTATACCCCTTACTGTTTAGTTGCTTTAAACAA TTGGCTAGGTTGGATTGTCCTAGCAGTTATTTGGATATGTTCTATTTTAGGGATTGTTTTAACATCAATATACTTACCAA AATGGGGTAAAACACCAAAATTATCAACCGTTTTATACGTCGTTCTTGGTTGGATGATTTTAATTGTCATTTATCCTTTA TGGAATGCCCTGGATCCCGTAGGTTTCTGGCTTTTAGTCGCTGGTGGCGTTGTTTATTCTGTTGGAGCACTCATCTATCA CTTTAAATTTCCTTTTGCCCATGTGGTATGGCACCTCTTTGTTTTACTGGCTGCAATGCTCATGTTCTTCTCTGTTTACC TTTATGTGGGATAA
Upstream 100 bases:
>100_bases TGGAAAGAGCAAAAAAGGTTGATAATATTATTTTTTTGATTCCAAAAACAAATTAAAAATTGCTCAAAAGCTGAATAAAT CAATAAATTGGAGAGACCAA
Downstream 100 bases:
>100_bases GATAAAAAACCGTTCGGATGAACGGGTTTTTTATTTATAAATACCAGCTATAACATACCCTTCTAGCCTTTTTTGTAAAA TCTCCGATTCTTCCACATAA
Product: hemolysin like protein
Products: NA
Alternate protein names: Hemolysin III; Hly-III [H]
Number of amino acids: Translated: 217; Mature: 217
Protein sequence:
>217_residues MEETQGSKTYQILNEIFNAVTHGAGTGLAIAALVLLVIKGAASGSALEVVAFTIYGASLVILFLCSTLAHGLHFTKAVKV FRVFDHNGIFFLIAGTYTPYCLVALNNWLGWIVLAVIWICSILGIVLTSIYLPKWGKTPKLSTVLYVVLGWMILIVIYPL WNALDPVGFWLLVAGGVVYSVGALIYHFKFPFAHVVWHLFVLLAAMLMFFSVYLYVG
Sequences:
>Translated_217_residues MEETQGSKTYQILNEIFNAVTHGAGTGLAIAALVLLVIKGAASGSALEVVAFTIYGASLVILFLCSTLAHGLHFTKAVKV FRVFDHNGIFFLIAGTYTPYCLVALNNWLGWIVLAVIWICSILGIVLTSIYLPKWGKTPKLSTVLYVVLGWMILIVIYPL WNALDPVGFWLLVAGGVVYSVGALIYHFKFPFAHVVWHLFVLLAAMLMFFSVYLYVG >Mature_217_residues MEETQGSKTYQILNEIFNAVTHGAGTGLAIAALVLLVIKGAASGSALEVVAFTIYGASLVILFLCSTLAHGLHFTKAVKV FRVFDHNGIFFLIAGTYTPYCLVALNNWLGWIVLAVIWICSILGIVLTSIYLPKWGKTPKLSTVLYVVLGWMILIVIYPL WNALDPVGFWLLVAGGVVYSVGALIYHFKFPFAHVVWHLFVLLAAMLMFFSVYLYVG
Specific function: Unknown
COG id: COG1272
COG function: function code R; Predicted membrane protein, hemolysin III homolog
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0073 (Hly-III) family [H]
Homologues:
Organism=Homo sapiens, GI154759275, Length=186, Percent_Identity=31.1827956989247, Blast_Score=68, Evalue=6e-12, Organism=Homo sapiens, GI154759277, Length=206, Percent_Identity=28.6407766990291, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI1789266, Length=213, Percent_Identity=38.9671361502347, Blast_Score=136, Evalue=1e-33, Organism=Caenorhabditis elegans, GI71996356, Length=219, Percent_Identity=31.5068493150685, Blast_Score=68, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004254 - InterPro: IPR005744 [H]
Pfam domain/function: PF03006 HlyIII [H]
EC number: NA
Molecular weight: Translated: 23865; Mature: 23865
Theoretical pI: Translated: 8.75; Mature: 8.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEETQGSKTYQILNEIFNAVTHGAGTGLAIAALVLLVIKGAASGSALEVVAFTIYGASLV CCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH ILFLCSTLAHGLHFTKAVKVFRVFDHNGIFFLIAGTYTPYCLVALNNWLGWIVLAVIWIC HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH SILGIVLTSIYLPKWGKTPKLSTVLYVVLGWMILIVIYPLWNALDPVGFWLLVAGGVVYS HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VGALIYHFKFPFAHVVWHLFVLLAAMLMFFSVYLYVG HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MEETQGSKTYQILNEIFNAVTHGAGTGLAIAALVLLVIKGAASGSALEVVAFTIYGASLV CCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH ILFLCSTLAHGLHFTKAVKVFRVFDHNGIFFLIAGTYTPYCLVALNNWLGWIVLAVIWIC HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH SILGIVLTSIYLPKWGKTPKLSTVLYVVLGWMILIVIYPLWNALDPVGFWLLVAGGVVYS HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VGALIYHFKFPFAHVVWHLFVLLAAMLMFFSVYLYVG HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7495855 [H]