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The map label for this gene is cph1 [H]

Identifier: 154246385

GI number: 154246385

Start: 2730234

End: 2732399

Strand: Direct

Name: cph1 [H]

Synonym: Xaut_2444

Alternate gene names: 154246385

Gene position: 2730234-2732399 (Clockwise)

Preceding gene: 154246383

Following gene: 154246386

Centisome position: 51.43

GC content: 72.9

Gene sequence:

>2166_bases
ATGGAAGACGCGACCTCCCGCCGCCCGGCCCGCTCCGATCTCGACCCTCTTACCGTGTGCGACCGCGAGCCGATCCACAG
GCCGGGCGCCATCCAGCCCCACGGCCTGCTGCTGGTGGCCGATTCGCGCACCCTCAAGGTGGTCGCCGCGGCGGGCGACG
TGGAGGGCCGGCTCGCCGCCGACTGGGCCGGGCGCGACCTCGGGGCGCTGCTCGGCCGCGACGTGGCCGCCCTGCTCGGC
GCGGCGGCGGTGGGCACGGTGCGGGTCGGGCGGGTGGCGGGACGGGACGAGACCTTCGAGGTGCAGATCCATGCCTCCGG
CCGGGGCCTGCTGGTGGAACTGGAGCCCGCCGGCGCGCCGCTGGCGGCCGCGGATATCCTCGCCGGTCTCGATGCCTCCG
CCACCCGGTTCGAGCAGGCGCCCGACCTGCGCGCCCTGTGCGCGGAGGCGGCGCAGGCGTTCCGCCGGATCACCGGCTTC
GACCGGGTGATGATCTACCAGTTCCGCGAGGACGAGGCCGGCGTGGTGCTGGCGGAGGCCAAGGCGCCGGAGATGGGCTC
CTTCCTCAACCACCACTTCCCCGGCGGCGACGTGCCCCGGCAGGCGCGCGCGCTATATGTGCGCAACCGCGTGCGCGTCA
TCCCCGACGTGGCCTACGTGCCCGCGCCGCTGCGGCCCGCCGCGACCGACGGCGCTGGGCCCGACTGGAGCGATCTGGAC
ATGAGCGACCTCGGGCTGCGCTCGGTCTCGCCCATCCATGTGCAATATCTGAAGAACATGGGGGTGGGGGCCTCGGCCTC
GGTGTCCATCGTGAAGGATGGGCAACTGTGGGGGCTGGTGGCCTGCCATCACCGCACGGCGCGGCTGTTGCCCTACGAGC
TGCGCCTCGCCTGCCAGTCGCTGGCGGGCAACCTTGCCCGGCAGATCCGCGCCAAGGTGGACGCGGTACTCTATCGCGAG
CGCATCCGGCTGCGCGCCGCCGAGGACGCGCTGGCCGACGCGCTCGCCGGTGACTTCGCGGTGGAGGACGTGCTCGACCG
GCACGGCGACGACCTGTGCCGGGCGCTGAGCGCCGACGGCTTCGCCGCCGTGGCCGGGTCCATGCTCCTGACCAAGGGCC
GCTGTCCGGATGAGGAAACCGTCCGGCGCATCGCGCAATGGGTGGAGACGCAGGCGCAGGTGCGCGCCTTCAGCACCCAC
GCCCTGTCCGAGCACCTGCCCGCCGATTCCGGCGCGGTGGACGCGCGGGCGAGCGGGCTGCTCGCCCTGACCGTGCCGGG
CGAAGAGCCGCTGGTCCTGCTGTGGTTCCGCGCTGAGCAGGTGGAGGTGGTGAACTGGGCCGGCAACCCGCACAAGGCCT
CGTCCGCCGATCCGCAGGCGGAGCTGACGCCGCGCGCCTCCTTCGCGGCCTGGAGCGAGACCGTGCGCGGGCGGTCGCGC
CGCTGGACGCTGGTGGAGACCGAGACCGCCCAGCGCCTCGCCCACACTTTGCTTCAGGCCCGCCAGCAGCGCCGGATCCG
CGAGCTGAACCGCCAGCTCTCCGCCACCGTGGTCGAGAACGAGCGCCTGCTCCAGTACAAGGACCACCTCATGAACGAGG
TGAACCACCGGGTGCAGAACAGCCTGCAACTGGTGGCCTCCTTCCTGCGGCTGCAGGCGCGGACCCTGGGCGACGCCCCC
GCGCGCGACGCGCTCGCCGAGGCCGAGCGCCGCATCGCCGCCGTGGGCCTCGTCCACCGACAGCTCTATGGCGGCGAACA
GGTGGAGACGGTGGACCTGTCGCGCTACCTCACGGACCTGTCGCACGAAGTCACCAATTCCCTCGGGGCTGAGTGGCGCG
CGCACCTGATGCTCGACCTCGCGCCGGTGCTGATGGCCGCCGACCGCGCGGTGCGGCTCGGCCTCATCCTCACCGAGCTG
GTGCTGAACACGGCCAAATATGCCTATCTGGGCGCGCCGGGGCCCCTGATCCTCGCCCTCGACCAGAACCGCGACCGCTT
CCGGCTGGTGGTGGCCGACCGGGGCGCCGGCAAGACCGGAGCGCGGCAGGGCTTCGGCACCGTCATTCTCAACGCCATGG
TCCAGAGCCTCAACGGCACGCTGGAGGACCTCGACAACGCCCCCGGCCTGCGCACCGTCGTCACCGCGCCGATCGGCATC
GGCTAG

Upstream 100 bases:

>100_bases
CGGTAGAGCCTCCGCTTGCCATGCCCGCCGGGCCCACCGAGCCGAAGGTCGATGCGTACGCCGTTCATGCCCTACCGCCA
CCGATGCAAAGCCTGAGTTG

Downstream 100 bases:

>100_bases
GGCCGCCGGGATGGATGCGGTGGATGCGCCCGCCCTCGGCCGCGCGGCCCGCCTGAAGGCGGAAACGGCGGCGGTCCATG
GCCGGCTCGATGCCCGGATC

Product: multi-sensor signal transduction histidine kinase

Products: NA

Alternate protein names: Bacteriophytochrome cph1; Light-regulated histidine kinase 1 [H]

Number of amino acids: Translated: 721; Mature: 721

Protein sequence:

>721_residues
MEDATSRRPARSDLDPLTVCDREPIHRPGAIQPHGLLLVADSRTLKVVAAAGDVEGRLAADWAGRDLGALLGRDVAALLG
AAAVGTVRVGRVAGRDETFEVQIHASGRGLLVELEPAGAPLAAADILAGLDASATRFEQAPDLRALCAEAAQAFRRITGF
DRVMIYQFREDEAGVVLAEAKAPEMGSFLNHHFPGGDVPRQARALYVRNRVRVIPDVAYVPAPLRPAATDGAGPDWSDLD
MSDLGLRSVSPIHVQYLKNMGVGASASVSIVKDGQLWGLVACHHRTARLLPYELRLACQSLAGNLARQIRAKVDAVLYRE
RIRLRAAEDALADALAGDFAVEDVLDRHGDDLCRALSADGFAAVAGSMLLTKGRCPDEETVRRIAQWVETQAQVRAFSTH
ALSEHLPADSGAVDARASGLLALTVPGEEPLVLLWFRAEQVEVVNWAGNPHKASSADPQAELTPRASFAAWSETVRGRSR
RWTLVETETAQRLAHTLLQARQQRRIRELNRQLSATVVENERLLQYKDHLMNEVNHRVQNSLQLVASFLRLQARTLGDAP
ARDALAEAERRIAAVGLVHRQLYGGEQVETVDLSRYLTDLSHEVTNSLGAEWRAHLMLDLAPVLMAADRAVRLGLILTEL
VLNTAKYAYLGAPGPLILALDQNRDRFRLVVADRGAGKTGARQGFGTVILNAMVQSLNGTLEDLDNAPGLRTVVTAPIGI
G

Sequences:

>Translated_721_residues
MEDATSRRPARSDLDPLTVCDREPIHRPGAIQPHGLLLVADSRTLKVVAAAGDVEGRLAADWAGRDLGALLGRDVAALLG
AAAVGTVRVGRVAGRDETFEVQIHASGRGLLVELEPAGAPLAAADILAGLDASATRFEQAPDLRALCAEAAQAFRRITGF
DRVMIYQFREDEAGVVLAEAKAPEMGSFLNHHFPGGDVPRQARALYVRNRVRVIPDVAYVPAPLRPAATDGAGPDWSDLD
MSDLGLRSVSPIHVQYLKNMGVGASASVSIVKDGQLWGLVACHHRTARLLPYELRLACQSLAGNLARQIRAKVDAVLYRE
RIRLRAAEDALADALAGDFAVEDVLDRHGDDLCRALSADGFAAVAGSMLLTKGRCPDEETVRRIAQWVETQAQVRAFSTH
ALSEHLPADSGAVDARASGLLALTVPGEEPLVLLWFRAEQVEVVNWAGNPHKASSADPQAELTPRASFAAWSETVRGRSR
RWTLVETETAQRLAHTLLQARQQRRIRELNRQLSATVVENERLLQYKDHLMNEVNHRVQNSLQLVASFLRLQARTLGDAP
ARDALAEAERRIAAVGLVHRQLYGGEQVETVDLSRYLTDLSHEVTNSLGAEWRAHLMLDLAPVLMAADRAVRLGLILTEL
VLNTAKYAYLGAPGPLILALDQNRDRFRLVVADRGAGKTGARQGFGTVILNAMVQSLNGTLEDLDNAPGLRTVVTAPIGI
G
>Mature_721_residues
MEDATSRRPARSDLDPLTVCDREPIHRPGAIQPHGLLLVADSRTLKVVAAAGDVEGRLAADWAGRDLGALLGRDVAALLG
AAAVGTVRVGRVAGRDETFEVQIHASGRGLLVELEPAGAPLAAADILAGLDASATRFEQAPDLRALCAEAAQAFRRITGF
DRVMIYQFREDEAGVVLAEAKAPEMGSFLNHHFPGGDVPRQARALYVRNRVRVIPDVAYVPAPLRPAATDGAGPDWSDLD
MSDLGLRSVSPIHVQYLKNMGVGASASVSIVKDGQLWGLVACHHRTARLLPYELRLACQSLAGNLARQIRAKVDAVLYRE
RIRLRAAEDALADALAGDFAVEDVLDRHGDDLCRALSADGFAAVAGSMLLTKGRCPDEETVRRIAQWVETQAQVRAFSTH
ALSEHLPADSGAVDARASGLLALTVPGEEPLVLLWFRAEQVEVVNWAGNPHKASSADPQAELTPRASFAAWSETVRGRSR
RWTLVETETAQRLAHTLLQARQQRRIRELNRQLSATVVENERLLQYKDHLMNEVNHRVQNSLQLVASFLRLQARTLGDAP
ARDALAEAERRIAAVGLVHRQLYGGEQVETVDLSRYLTDLSHEVTNSLGAEWRAHLMLDLAPVLMAADRAVRLGLILTEL
VLNTAKYAYLGAPGPLILALDQNRDRFRLVVADRGAGKTGARQGFGTVILNAMVQSLNGTLEDLDNAPGLRTVVTAPIGI
G

Specific function: Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. Has also a slight blue shift

COG id: COG4251

COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR000014
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 78020; Mature: 78020

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: PS50046 PHYTOCHROME_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDATSRRPARSDLDPLTVCDREPIHRPGAIQPHGLLLVADSRTLKVVAAAGDVEGRLAA
CCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCEEE
DWAGRDLGALLGRDVAALLGAAAVGTVRVGRVAGRDETFEVQIHASGRGLLVELEPAGAP
CCCCCHHHHHHHHHHHHHHHHHHHHHEEECEECCCCCEEEEEEEECCCEEEEEECCCCCC
LAAADILAGLDASATRFEQAPDLRALCAEAAQAFRRITGFDRVMIYQFREDEAGVVLAEA
HHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEC
KAPEMGSFLNHHFPGGDVPRQARALYVRNRVRVIPDVAYVPAPLRPAATDGAGPDWSDLD
CCCCHHHHHHCCCCCCCCCHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCC
MSDLGLRSVSPIHVQYLKNMGVGASASVSIVKDGQLWGLVACHHRTARLLPYELRLACQS
HHHCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCHHHHCHHHHHHHHHH
LAGNLARQIRAKVDAVLYRERIRLRAAEDALADALAGDFAVEDVLDRHGDDLCRALSADG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC
FAAVAGSMLLTKGRCPDEETVRRIAQWVETQAQVRAFSTHALSEHLPADSGAVDARASGL
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE
LALTVPGEEPLVLLWFRAEQVEVVNWAGNPHKASSADPQAELTPRASFAAWSETVRGRSR
EEEEECCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
RWTLVETETAQRLAHTLLQARQQRRIRELNRQLSATVVENERLLQYKDHLMNEVNHRVQN
EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
SLQLVASFLRLQARTLGDAPARDALAEAERRIAAVGLVHRQLYGGEQVETVDLSRYLTDL
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHH
SHEVTNSLGAEWRAHLMLDLAPVLMAADRAVRLGLILTELVLNTAKYAYLGAPGPLILAL
HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEE
DQNRDRFRLVVADRGAGKTGARQGFGTVILNAMVQSLNGTLEDLDNAPGLRTVVTAPIGI
ECCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCEEEEECCCCC
G
C
>Mature Secondary Structure
MEDATSRRPARSDLDPLTVCDREPIHRPGAIQPHGLLLVADSRTLKVVAAAGDVEGRLAA
CCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCEEE
DWAGRDLGALLGRDVAALLGAAAVGTVRVGRVAGRDETFEVQIHASGRGLLVELEPAGAP
CCCCCHHHHHHHHHHHHHHHHHHHHHEEECEECCCCCEEEEEEEECCCEEEEEECCCCCC
LAAADILAGLDASATRFEQAPDLRALCAEAAQAFRRITGFDRVMIYQFREDEAGVVLAEA
HHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEC
KAPEMGSFLNHHFPGGDVPRQARALYVRNRVRVIPDVAYVPAPLRPAATDGAGPDWSDLD
CCCCHHHHHHCCCCCCCCCHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCC
MSDLGLRSVSPIHVQYLKNMGVGASASVSIVKDGQLWGLVACHHRTARLLPYELRLACQS
HHHCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCHHHHCHHHHHHHHHH
LAGNLARQIRAKVDAVLYRERIRLRAAEDALADALAGDFAVEDVLDRHGDDLCRALSADG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC
FAAVAGSMLLTKGRCPDEETVRRIAQWVETQAQVRAFSTHALSEHLPADSGAVDARASGL
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE
LALTVPGEEPLVLLWFRAEQVEVVNWAGNPHKASSADPQAELTPRASFAAWSETVRGRSR
EEEEECCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
RWTLVETETAQRLAHTLLQARQQRRIRELNRQLSATVVENERLLQYKDHLMNEVNHRVQN
EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
SLQLVASFLRLQARTLGDAPARDALAEAERRIAAVGLVHRQLYGGEQVETVDLSRYLTDL
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHH
SHEVTNSLGAEWRAHLMLDLAPVLMAADRAVRLGLILTELVLNTAKYAYLGAPGPLILAL
HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEE
DQNRDRFRLVVADRGAGKTGARQGFGTVILNAMVQSLNGTLEDLDNAPGLRTVVTAPIGI
ECCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCEEEEECCCCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 9109482; 9278513; 10828948 [H]