Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
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Accession | NC_009636 |
Length | 3,781,904 |
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The map label for this gene is gpmA [H]
Identifier: 150398561
GI number: 150398561
Start: 3574506
End: 3575141
Strand: Direct
Name: gpmA [H]
Synonym: Smed_3372
Alternate gene names: 150398561
Gene position: 3574506-3575141 (Clockwise)
Preceding gene: 150398560
Following gene: 150398564
Centisome position: 94.52
GC content: 62.89
Gene sequence:
>636_bases ATGAGCGGCACACTCGTCCTTGTCCGGCACGGCCAGAGCGACTGGAACCTGAAGAACCTCTTCACCGGCTGGCGCGATCC CGACCTGACCGAGCTCGGCATCGAGGAGGCAATGGCCGGCGGCAAGGCGCTTGCCGACTACGGCATCAAATTCGACATCG CCTTCACCTCGGATCTCATCCGTGCCCAGCGCACCTGCCAGCTGGTGCTGGACGCTGTCGATCAGTCATCGCTCGAAACG ATCCGCGACCAGGCTTTGAACGAGCGCGACTACGGTGATCTTTCCGGCCTCAACAAAGACGATGCACGGGCGAAATGGGG CGAGGAACAGGTCCACATCTGGCGCCGATCCTACGACGTGCCGCCGCCGGGCGGCGAGAGCCTGCGCGACACCGGCGCTC GCGTCTGGCCTTACTATCTCACCGACATCCTGCCTCGCGTGCTTTCCGGTGAAAAGGTTCTGGTCGCCGCCCACGGCAAC TCGCTGCGCTCGCTGGTGATGGTGCTCGACGGCTTGACCAAGGAGCAGATCCTCAAGCTCAACCTCGCGACCGGGGTGCC AATGGTCTACAAGCTCAACGCGGATTCCACCGTCGCATCGAAGGAAGTGCTCGGAGATATGTCAGCGGCGCATTGA
Upstream 100 bases:
>100_bases ATCTGCGGCGATCTGGGGGCGGAGCCAGAAGCCGGGCTTTTACTCCATGCTCGACGTTCTCGGGCTTGACTGACATCCTA ATCACAAAGAGGAAATAGAA
Downstream 100 bases:
>100_bases GAGGGCGGTTGCCCCCTCGTCCCGCTCGCGTCGAGCAGGACTCGAGCGCTCGCTCGCCGCTTGTCCCTTCCCCCGCTTGC GGGAAGAAGGTGCCGGCAGG
Product: phosphoglyceromutase
Products: NA
Alternate protein names: BPG-dependent PGAM; PGAM; Phosphoglyceromutase; dPGM [H]
Number of amino acids: Translated: 211; Mature: 210
Protein sequence:
>211_residues MSGTLVLVRHGQSDWNLKNLFTGWRDPDLTELGIEEAMAGGKALADYGIKFDIAFTSDLIRAQRTCQLVLDAVDQSSLET IRDQALNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDVPPPGGESLRDTGARVWPYYLTDILPRVLSGEKVLVAAHGN SLRSLVMVLDGLTKEQILKLNLATGVPMVYKLNADSTVASKEVLGDMSAAH
Sequences:
>Translated_211_residues MSGTLVLVRHGQSDWNLKNLFTGWRDPDLTELGIEEAMAGGKALADYGIKFDIAFTSDLIRAQRTCQLVLDAVDQSSLET IRDQALNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDVPPPGGESLRDTGARVWPYYLTDILPRVLSGEKVLVAAHGN SLRSLVMVLDGLTKEQILKLNLATGVPMVYKLNADSTVASKEVLGDMSAAH >Mature_210_residues SGTLVLVRHGQSDWNLKNLFTGWRDPDLTELGIEEAMAGGKALADYGIKFDIAFTSDLIRAQRTCQLVLDAVDQSSLETI RDQALNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDVPPPGGESLRDTGARVWPYYLTDILPRVLSGEKVLVAAHGNS LRSLVMVLDGLTKEQILKLNLATGVPMVYKLNADSTVASKEVLGDMSAAH
Specific function: Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate [H]
COG id: COG0588
COG function: function code G; Phosphoglycerate mutase 1
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily [H]
Homologues:
Organism=Homo sapiens, GI50593010, Length=230, Percent_Identity=45.6521739130435, Blast_Score=203, Evalue=1e-52, Organism=Homo sapiens, GI4505753, Length=230, Percent_Identity=48.695652173913, Blast_Score=202, Evalue=1e-52, Organism=Homo sapiens, GI71274132, Length=230, Percent_Identity=45.6521739130435, Blast_Score=188, Evalue=3e-48, Organism=Homo sapiens, GI4502445, Length=235, Percent_Identity=37.0212765957447, Blast_Score=153, Evalue=9e-38, Organism=Homo sapiens, GI40353764, Length=235, Percent_Identity=37.0212765957447, Blast_Score=153, Evalue=9e-38, Organism=Homo sapiens, GI310129614, Length=160, Percent_Identity=50.625, Blast_Score=136, Evalue=1e-32, Organism=Escherichia coli, GI1786970, Length=227, Percent_Identity=46.2555066079295, Blast_Score=190, Evalue=6e-50, Organism=Saccharomyces cerevisiae, GI6322697, Length=216, Percent_Identity=41.2037037037037, Blast_Score=158, Evalue=6e-40, Organism=Saccharomyces cerevisiae, GI6324516, Length=279, Percent_Identity=25.4480286738351, Blast_Score=92, Evalue=4e-20, Organism=Saccharomyces cerevisiae, GI6320183, Length=270, Percent_Identity=25.1851851851852, Blast_Score=87, Evalue=2e-18, Organism=Saccharomyces cerevisiae, GI6324857, Length=163, Percent_Identity=28.8343558282209, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI24646216, Length=231, Percent_Identity=42.8571428571429, Blast_Score=186, Evalue=1e-47, Organism=Drosophila melanogaster, GI85725270, Length=231, Percent_Identity=44.1558441558442, Blast_Score=185, Evalue=2e-47, Organism=Drosophila melanogaster, GI85725272, Length=231, Percent_Identity=44.1558441558442, Blast_Score=185, Evalue=2e-47, Organism=Drosophila melanogaster, GI24650981, Length=231, Percent_Identity=44.1558441558442, Blast_Score=185, Evalue=2e-47, Organism=Drosophila melanogaster, GI28571817, Length=220, Percent_Identity=34.0909090909091, Blast_Score=134, Evalue=6e-32, Organism=Drosophila melanogaster, GI28571815, Length=220, Percent_Identity=34.0909090909091, Blast_Score=133, Evalue=6e-32, Organism=Drosophila melanogaster, GI24648979, Length=220, Percent_Identity=34.0909090909091, Blast_Score=133, Evalue=7e-32,
Paralogues:
None
Copy number: 960 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013078 - InterPro: IPR001345 - InterPro: IPR005952 [H]
Pfam domain/function: PF00300 PGAM [H]
EC number: =5.4.2.1 [H]
Molecular weight: Translated: 23270; Mature: 23138
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: PS00175 PG_MUTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGTLVLVRHGQSDWNLKNLFTGWRDPDLTELGIEEAMAGGKALADYGIKFDIAFTSDLI CCCEEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHCCCEEEEEHHHHHH RAQRTCQLVLDAVDQSSLETIRDQALNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDV HHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCC PPPGGESLRDTGARVWPYYLTDILPRVLSGEKVLVAAHGNSLRSLVMVLDGLTKEQILKL CCCCCCCHHHCCCEEHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCHHHHEEE NLATGVPMVYKLNADSTVASKEVLGDMSAAH ECCCCCCEEEEECCCCHHHHHHHHHHHHCCC >Mature Secondary Structure SGTLVLVRHGQSDWNLKNLFTGWRDPDLTELGIEEAMAGGKALADYGIKFDIAFTSDLI CCEEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHCCCEEEEEHHHHHH RAQRTCQLVLDAVDQSSLETIRDQALNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDV HHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCC PPPGGESLRDTGARVWPYYLTDILPRVLSGEKVLVAAHGNSLRSLVMVLDGLTKEQILKL CCCCCCCHHHCCCEEHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCHHHHEEE NLATGVPMVYKLNADSTVASKEVLGDMSAAH ECCCCCCEEEEECCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA