Definition | Parabacteroides distasonis ATCC 8503 chromosome, complete genome. |
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Accession | NC_009615 |
Length | 4,811,379 |
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The map label for this gene is dcp [H]
Identifier: 150008235
GI number: 150008235
Start: 1874610
End: 1876769
Strand: Reverse
Name: dcp [H]
Synonym: BDI_1601
Alternate gene names: 150008235
Gene position: 1876769-1874610 (Counterclockwise)
Preceding gene: 150008236
Following gene: 150008234
Centisome position: 39.01
GC content: 48.19
Gene sequence:
>2160_bases ATGAAACAATTAATTATGGCAGCAGGATTAGCCGTTATGCTTACTGCCTGCGGTACTTCCGAAAAGAAGACCGTGGAGGG TGAGAACCCGTTCTTTGCGGAATATACCACCCCGTTTGGAGTTCCACCTTTTGATCAAATCAAGTTCGAGCACTACAAAC CGGCCCTATTGCAAGGCATGGAAGAGGGACGCAAGGAGATCGAGGCGATCGTGAATAACCCGGAGGAGCCGACGTTCGAG AATACGATTGTCGCTTTGGATGAGCAGGGTGCGTTGCTTCGGAAGGTCCAGATCGTTTTCGGTGGACAGAATAGCGTGAA TACGAATGATGAGATGCAGGCGTTAAGCCGTGAGATGTCGCCGCTATTGTCAAAATATAGTGATGATATCAACTTGAATC CGAAATTATTCGCTCGTGTGAAGGCGGTATACGATAAGAAGGATGAGTTGGGTCTCGATAAGGAGCAAATGAAGTTATTG GAGGAGACTTATAAGGACTTCGTTCGGGGTGGCGCTAATCTTTCCGCTGAGGATCAGGCTAAATTGCGTGAGTTGAATAG CAAGATCTCCATGCTACAGCTTACTTTCGGACAGAATATGCTGAAAGAGACGAACGCTTTTAAATTGGTGATCGACAAGC AGGAGGATCTTTCCGGTCTGCCCGAGACCTTGATCGCTAACGCCGCTCAAGCGGCTAAGGATGCCGGGATGGAAGGCAAA TGGGTATTTACCTTGCAGAACCCGAGCGTGATGCCGTTCTTGCAATATTCCGATAAACGTGAGTTGCGTGAGAAGATGTT CAACGCTTATATCAACCGTGGTAATAATAATAATGAGAACGATAACAAGGAAGTGGTTCGTGATTTGGTTGCCGCTCGTT TGGCGAAAGCGAAGTTGATGGGCTATGATGATTACGCTTCTTTCGTGTTGGAGGATCGTATGGCGAAAAGCTCGGATAAG GTTTATCAATTGTTAGATGAGGTTTGGAAGCCTGCTTTGGCGAAAGCGAAAGAGGAATTGGCCGATATAAACGCCGAGAT CAAGAAAGAAGGCGGCAATTTCGAGGCCGAGGGCTGGGATTGGCGTTATTATTTCGAGAAGGCCAAGAAGGCTAAATTCA ATTTGGATGAGAATGAGGTTCGTCCTTACTTGAAGTTGGATAATGTTCGTGAGGGTGCTTTCTATGTAGCTAATAAGTTA TATGGTATCACGTTCACCCCGATCCGTAATATTCCGTTGCCTTATCCGGAAGCGCAGGCTTTTGAGTGCAAAGATAAGGA TGGCTCTCATTTGGGCGTTATTTATTTCGATTTCTTCCCTCGTGCTAGCAAGCGTGGTGGTGCGTGGTGTGGTTCTTATC GTCCGCAGGCTTATAAGGATGGCAAGCGTGTGGCTCCGGTCGTAACGATCGTTTGTAACTTTAGCCAGCCCGCTCCGGGA CAACCTGCGTTGTTGAGCGCTGATGAGGCGAATACATTGTTCCATGAGTTCGGTCATGGTTTGCACGGCTTGTTCCGTGA CGTGCATTACTCCGGTGTTTCCGGTGTTCCTCGTGATTTCGTGGAGTTGCCTTCACAGGTTATGGAGCATTGGGTATTCG AGCCGGAAGTATTGAAGGTGTACGCTAAGCATTATCAGACCGGCGAGGTGATCCCGGCCGAGTTGATCGAGAAGTTGGAT AAGAGCGGTAAGTACGGACAAGGTTTCGCTACGACGGAGTATCTGGCGGCTTCTTATCTGGATATGGATTTCCATGCGAT CAGTGGTGACGCTGCGGATAAGAAGGTGATCAAGTTCGTTGACCAGACGAATAATGTTCCGGCCAACTTGAACGTGATGG ATTTCGAGCAACAGACGTTAGGCCGTCGTGGTTTGCTGAAACAAATCCCTTCCCGTTACCGTACGACTTACTTCAACCAT ACGATGGGTGGCGGCTACACCGCCGGCTATTATAGCTACATCTGGGCTGAGGTATTGGATTGCGACGCTTTCGAGGCATT CAAGGAAACCGGCGACATCTTTAATCAAGAATGTGCCGATAAATTCCGTAAATATGTCTTGACCCCGGGCGGTATCGACG ACGCTATGGATATGTACAAGAATTTCCGTGGCAAGGAACCGGGTACGGATCCGTTGCTGAAGAATAGAGGACTGAAATAA
Upstream 100 bases:
>100_bases ATTTCCGTGGCAAACAACCTAGCATCGATCCGCTGTTGGAGAACAGAGGGCTAAAATGAGCAGAACAATTTATAACTCAT AAATCAAAAAATCAGTAAAG
Downstream 100 bases:
>100_bases TCTAGAAATGGAGATTTTATAAAGGCGGACCGGTTGGTTCGCCTTTTTTTGTATATGCTCAACCTCCCGGATCTGTATTA CATTTGCTAAGTTTTATCAC
Product: peptidyl-dipeptidase
Products: NA
Alternate protein names: Dipeptidyl carboxypeptidase [H]
Number of amino acids: Translated: 719; Mature: 719
Protein sequence:
>719_residues MKQLIMAAGLAVMLTACGTSEKKTVEGENPFFAEYTTPFGVPPFDQIKFEHYKPALLQGMEEGRKEIEAIVNNPEEPTFE NTIVALDEQGALLRKVQIVFGGQNSVNTNDEMQALSREMSPLLSKYSDDINLNPKLFARVKAVYDKKDELGLDKEQMKLL EETYKDFVRGGANLSAEDQAKLRELNSKISMLQLTFGQNMLKETNAFKLVIDKQEDLSGLPETLIANAAQAAKDAGMEGK WVFTLQNPSVMPFLQYSDKRELREKMFNAYINRGNNNNENDNKEVVRDLVAARLAKAKLMGYDDYASFVLEDRMAKSSDK VYQLLDEVWKPALAKAKEELADINAEIKKEGGNFEAEGWDWRYYFEKAKKAKFNLDENEVRPYLKLDNVREGAFYVANKL YGITFTPIRNIPLPYPEAQAFECKDKDGSHLGVIYFDFFPRASKRGGAWCGSYRPQAYKDGKRVAPVVTIVCNFSQPAPG QPALLSADEANTLFHEFGHGLHGLFRDVHYSGVSGVPRDFVELPSQVMEHWVFEPEVLKVYAKHYQTGEVIPAELIEKLD KSGKYGQGFATTEYLAASYLDMDFHAISGDAADKKVIKFVDQTNNVPANLNVMDFEQQTLGRRGLLKQIPSRYRTTYFNH TMGGGYTAGYYSYIWAEVLDCDAFEAFKETGDIFNQECADKFRKYVLTPGGIDDAMDMYKNFRGKEPGTDPLLKNRGLK
Sequences:
>Translated_719_residues MKQLIMAAGLAVMLTACGTSEKKTVEGENPFFAEYTTPFGVPPFDQIKFEHYKPALLQGMEEGRKEIEAIVNNPEEPTFE NTIVALDEQGALLRKVQIVFGGQNSVNTNDEMQALSREMSPLLSKYSDDINLNPKLFARVKAVYDKKDELGLDKEQMKLL EETYKDFVRGGANLSAEDQAKLRELNSKISMLQLTFGQNMLKETNAFKLVIDKQEDLSGLPETLIANAAQAAKDAGMEGK WVFTLQNPSVMPFLQYSDKRELREKMFNAYINRGNNNNENDNKEVVRDLVAARLAKAKLMGYDDYASFVLEDRMAKSSDK VYQLLDEVWKPALAKAKEELADINAEIKKEGGNFEAEGWDWRYYFEKAKKAKFNLDENEVRPYLKLDNVREGAFYVANKL YGITFTPIRNIPLPYPEAQAFECKDKDGSHLGVIYFDFFPRASKRGGAWCGSYRPQAYKDGKRVAPVVTIVCNFSQPAPG QPALLSADEANTLFHEFGHGLHGLFRDVHYSGVSGVPRDFVELPSQVMEHWVFEPEVLKVYAKHYQTGEVIPAELIEKLD KSGKYGQGFATTEYLAASYLDMDFHAISGDAADKKVIKFVDQTNNVPANLNVMDFEQQTLGRRGLLKQIPSRYRTTYFNH TMGGGYTAGYYSYIWAEVLDCDAFEAFKETGDIFNQECADKFRKYVLTPGGIDDAMDMYKNFRGKEPGTDPLLKNRGLK >Mature_719_residues MKQLIMAAGLAVMLTACGTSEKKTVEGENPFFAEYTTPFGVPPFDQIKFEHYKPALLQGMEEGRKEIEAIVNNPEEPTFE NTIVALDEQGALLRKVQIVFGGQNSVNTNDEMQALSREMSPLLSKYSDDINLNPKLFARVKAVYDKKDELGLDKEQMKLL EETYKDFVRGGANLSAEDQAKLRELNSKISMLQLTFGQNMLKETNAFKLVIDKQEDLSGLPETLIANAAQAAKDAGMEGK WVFTLQNPSVMPFLQYSDKRELREKMFNAYINRGNNNNENDNKEVVRDLVAARLAKAKLMGYDDYASFVLEDRMAKSSDK VYQLLDEVWKPALAKAKEELADINAEIKKEGGNFEAEGWDWRYYFEKAKKAKFNLDENEVRPYLKLDNVREGAFYVANKL YGITFTPIRNIPLPYPEAQAFECKDKDGSHLGVIYFDFFPRASKRGGAWCGSYRPQAYKDGKRVAPVVTIVCNFSQPAPG QPALLSADEANTLFHEFGHGLHGLFRDVHYSGVSGVPRDFVELPSQVMEHWVFEPEVLKVYAKHYQTGEVIPAELIEKLD KSGKYGQGFATTEYLAASYLDMDFHAISGDAADKKVIKFVDQTNNVPANLNVMDFEQQTLGRRGLLKQIPSRYRTTYFNH TMGGGYTAGYYSYIWAEVLDCDAFEAFKETGDIFNQECADKFRKYVLTPGGIDDAMDMYKNFRGKEPGTDPLLKNRGLK
Specific function: Removes dipeptides from the C-termini of N-blocked tripeptides, tetrapeptides and larger peptides [H]
COG id: COG0339
COG function: function code E; Zn-dependent oligopeptidases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M3 family [H]
Homologues:
Organism=Homo sapiens, GI4507491, Length=656, Percent_Identity=28.5060975609756, Blast_Score=288, Evalue=1e-77, Organism=Homo sapiens, GI14149738, Length=656, Percent_Identity=30.4878048780488, Blast_Score=267, Evalue=2e-71, Organism=Homo sapiens, GI156105687, Length=690, Percent_Identity=24.9275362318841, Blast_Score=158, Evalue=2e-38, Organism=Escherichia coli, GI1787819, Length=694, Percent_Identity=40.3458213256484, Blast_Score=526, Evalue=1e-150, Organism=Escherichia coli, GI1789913, Length=692, Percent_Identity=33.8150289017341, Blast_Score=398, Evalue=1e-112, Organism=Caenorhabditis elegans, GI71999758, Length=586, Percent_Identity=19.1126279863481, Blast_Score=75, Evalue=1e-13, Organism=Caenorhabditis elegans, GI32565901, Length=583, Percent_Identity=19.8970840480274, Blast_Score=74, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6319793, Length=674, Percent_Identity=28.9317507418398, Blast_Score=237, Evalue=4e-63, Organism=Saccharomyces cerevisiae, GI6322715, Length=721, Percent_Identity=24.2718446601942, Blast_Score=134, Evalue=4e-32, Organism=Drosophila melanogaster, GI21356111, Length=715, Percent_Identity=21.5384615384615, Blast_Score=158, Evalue=2e-38, Organism=Drosophila melanogaster, GI20129717, Length=705, Percent_Identity=23.1205673758865, Blast_Score=142, Evalue=8e-34,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001567 [H]
Pfam domain/function: PF01432 Peptidase_M3 [H]
EC number: =3.4.15.5 [H]
Molecular weight: Translated: 81273; Mature: 81273
Theoretical pI: Translated: 5.21; Mature: 5.21
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQLIMAAGLAVMLTACGTSEKKTVEGENPFFAEYTTPFGVPPFDQIKFEHYKPALLQGM CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCHHHCCHHHCCHHHHHHH EEGRKEIEAIVNNPEEPTFENTIVALDEQGALLRKVQIVFGGQNSVNTNDEMQALSREMS HHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHH PLLSKYSDDINLNPKLFARVKAVYDKKDELGLDKEQMKLLEETYKDFVRGGANLSAEDQA HHHHHCCCCCCCCHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHH KLRELNSKISMLQLTFGQNMLKETNAFKLVIDKQEDLSGLPETLIANAAQAAKDAGMEGK HHHHHHHHHHHEEEHHHHHHHHCCCCEEEEEECCHHHCCCCHHHHHHHHHHHHHCCCCCE WVFTLQNPSVMPFLQYSDKRELREKMFNAYINRGNNNNENDNKEVVRDLVAARLAKAKLM EEEEECCCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC GYDDYASFVLEDRMAKSSDKVYQLLDEVWKPALAKAKEELADINAEIKKEGGNFEAEGWD CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCC WRYYFEKAKKAKFNLDENEVRPYLKLDNVREGAFYVANKLYGITFTPIRNIPLPYPEAQA HHHHHHHHHHCCCCCCHHHCCCCEEECCCCCCHHHHHHHHCCEEECCCCCCCCCCCCCCC FECKDKDGSHLGVIYFDFFPRASKRGGAWCGSYRPQAYKDGKRVAPVVTIVCNFSQPAPG EECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCEEEEEEEECCCCCCC QPALLSADEANTLFHEFGHGLHGLFRDVHYSGVSGVPRDFVELPSQVMEHWVFEPEVLKV CCCEEECCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHH YAKHYQTGEVIPAELIEKLDKSGKYGQGFATTEYLAASYLDMDFHAISGDAADKKVIKFV HHHHCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEECCCCCHHHHHHHHH DQTNNVPANLNVMDFEQQTLGRRGLLKQIPSRYRTTYFNHTMGGGYTAGYYSYIWAEVLD HHCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC CDAFEAFKETGDIFNQECADKFRKYVLTPGGIDDAMDMYKNFRGKEPGTDPLLKNRGLK CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCC >Mature Secondary Structure MKQLIMAAGLAVMLTACGTSEKKTVEGENPFFAEYTTPFGVPPFDQIKFEHYKPALLQGM CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCHHHCCHHHCCHHHHHHH EEGRKEIEAIVNNPEEPTFENTIVALDEQGALLRKVQIVFGGQNSVNTNDEMQALSREMS HHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHH PLLSKYSDDINLNPKLFARVKAVYDKKDELGLDKEQMKLLEETYKDFVRGGANLSAEDQA HHHHHCCCCCCCCHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHH KLRELNSKISMLQLTFGQNMLKETNAFKLVIDKQEDLSGLPETLIANAAQAAKDAGMEGK HHHHHHHHHHHEEEHHHHHHHHCCCCEEEEEECCHHHCCCCHHHHHHHHHHHHHCCCCCE WVFTLQNPSVMPFLQYSDKRELREKMFNAYINRGNNNNENDNKEVVRDLVAARLAKAKLM EEEEECCCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC GYDDYASFVLEDRMAKSSDKVYQLLDEVWKPALAKAKEELADINAEIKKEGGNFEAEGWD CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCC WRYYFEKAKKAKFNLDENEVRPYLKLDNVREGAFYVANKLYGITFTPIRNIPLPYPEAQA HHHHHHHHHHCCCCCCHHHCCCCEEECCCCCCHHHHHHHHCCEEECCCCCCCCCCCCCCC FECKDKDGSHLGVIYFDFFPRASKRGGAWCGSYRPQAYKDGKRVAPVVTIVCNFSQPAPG EECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCEEEEEEEECCCCCCC QPALLSADEANTLFHEFGHGLHGLFRDVHYSGVSGVPRDFVELPSQVMEHWVFEPEVLKV CCCEEECCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHH YAKHYQTGEVIPAELIEKLDKSGKYGQGFATTEYLAASYLDMDFHAISGDAADKKVIKFV HHHHCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEECCCCCHHHHHHHHH DQTNNVPANLNVMDFEQQTLGRRGLLKQIPSRYRTTYFNHTMGGGYTAGYYSYIWAEVLD HHCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC CDAFEAFKETGDIFNQECADKFRKYVLTPGGIDDAMDMYKNFRGKEPGTDPLLKNRGLK CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8226676; 9097039; 9278503 [H]