Definition | Clostridium difficile 630 chromosome, complete genome. |
---|---|
Accession | NC_009089 |
Length | 4,290,252 |
Click here to switch to the map view.
The map label for this gene is 126698566
Identifier: 126698566
GI number: 126698566
Start: 1146049
End: 1146936
Strand: Direct
Name: 126698566
Synonym: CD0982
Alternate gene names: NA
Gene position: 1146049-1146936 (Clockwise)
Preceding gene: 126698565
Following gene: 126698567
Centisome position: 26.71
GC content: 25.0
Gene sequence:
>888_bases ATGAAACAGACCAATACAAGTATAAGGCTTCTTACTAAAATTTCAGATTATATAAAGTTAATGAGAATAAAGCAATATAT AAAGAATTTCTTTGTATTTTCAGCTATAATTTTTTCAAACAACATACTAAATATAAATTTATTTTTAAATACGTTTATTG CGTTTGTGTGTTTTTGCCTAATGTCATCATCAGTATATGCACTGAATGATGCTATAGACATGGATAAAGATAAAAAACAT CCTAAAAAATGTAATAGACCAGTGGCAAGTGGAAGAATAAGCAAAAAAAGTGCTAATATACTATTTGTAGTATTAGCTTT AACTTCAGTCTGTTTATCAACAGTTGTTAGTTTTAATCTTTCTATAATTCTCAGTCTCTATTTGATAAACAATATATTAT ATTCTCTTAAACTAAAGAATATAATACTATTAGATGTGTTTTCAATATCTCTTGGTTTTATACTTAGGGTTTATGCAGGA TGTGTAGCCATAAGTGTTAGTTTATCAAATTGGATAATTTTATGTACATTTTTCTTATCTCTGTACTTAGCTCTTGGAAA ACGTAAAAAAGAAATAGAAACTCTAAGAGATGATGCAGTTGAACATAGAAAAATATTGGAAGATTATGACATAGAAAATC TAAATCAAATGATGATAGTTATATTAAGTTCTACAATTGTATGTTATGCATTGTATTCTACAAGTAATCCAGAAAAGCCA CATATGATATTTACAACAATATTTGTAGTTTATGGTGTACTTAGATATAATTATATAATTAACACTACAAATGAAAATAA TCCTACTGATATTGTCCTAAAAGATAATGCTTTAAAAATAAACGTAATCTTATGGATAATTACATGTTTAATAATATTGA TTTTTTAG
Upstream 100 bases:
>100_bases ACTATAGTAATCAGTAATGTCAATGGATTTATAGAAATTTTAAACATAGGGATAAAATCATATCCTGTTTAAAAAATAAT ATTGAAAGGGTAGTAAGTTT
Downstream 100 bases:
>100_bases TGATATTTTTAGTGATAGGATGGGGAAATACTTATGAAAAAAAGTGTATTATTACTTGATGTAGATTATACTGTTATAAA TACTGATAGCATGATAGATT
Product: phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 295; Mature: 295
Protein sequence:
>295_residues MKQTNTSIRLLTKISDYIKLMRIKQYIKNFFVFSAIIFSNNILNINLFLNTFIAFVCFCLMSSSVYALNDAIDMDKDKKH PKKCNRPVASGRISKKSANILFVVLALTSVCLSTVVSFNLSIILSLYLINNILYSLKLKNIILLDVFSISLGFILRVYAG CVAISVSLSNWIILCTFFLSLYLALGKRKKEIETLRDDAVEHRKILEDYDIENLNQMMIVILSSTIVCYALYSTSNPEKP HMIFTTIFVVYGVLRYNYIINTTNENNPTDIVLKDNALKINVILWIITCLIILIF
Sequences:
>Translated_295_residues MKQTNTSIRLLTKISDYIKLMRIKQYIKNFFVFSAIIFSNNILNINLFLNTFIAFVCFCLMSSSVYALNDAIDMDKDKKH PKKCNRPVASGRISKKSANILFVVLALTSVCLSTVVSFNLSIILSLYLINNILYSLKLKNIILLDVFSISLGFILRVYAG CVAISVSLSNWIILCTFFLSLYLALGKRKKEIETLRDDAVEHRKILEDYDIENLNQMMIVILSSTIVCYALYSTSNPEKP HMIFTTIFVVYGVLRYNYIINTTNENNPTDIVLKDNALKINVILWIITCLIILIF >Mature_295_residues MKQTNTSIRLLTKISDYIKLMRIKQYIKNFFVFSAIIFSNNILNINLFLNTFIAFVCFCLMSSSVYALNDAIDMDKDKKH PKKCNRPVASGRISKKSANILFVVLALTSVCLSTVVSFNLSIILSLYLINNILYSLKLKNIILLDVFSISLGFILRVYAG CVAISVSLSNWIILCTFFLSLYLALGKRKKEIETLRDDAVEHRKILEDYDIENLNQMMIVILSSTIVCYALYSTSNPEKP HMIFTTIFVVYGVLRYNYIINTTNENNPTDIVLKDNALKINVILWIITCLIILIF
Specific function: Possible permease/transporter [H]
COG id: COG0382
COG function: function code H; 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023214 - InterPro: IPR000537 [H]
Pfam domain/function: PF01040 UbiA [H]
EC number: NA
Molecular weight: Translated: 33726; Mature: 33726
Theoretical pI: Translated: 9.41; Mature: 9.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQTNTSIRLLTKISDYIKLMRIKQYIKNFFVFSAIIFSNNILNINLFLNTFIAFVCFCL CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHH MSSSVYALNDAIDMDKDKKHPKKCNRPVASGRISKKSANILFVVLALTSVCLSTVVSFNL HCCCCEEEHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH SIILSLYLINNILYSLKLKNIILLDVFSISLGFILRVYAGCVAISVSLSNWIILCTFFLS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHH LYLALGKRKKEIETLRDDAVEHRKILEDYDIENLNQMMIVILSSTIVCYALYSTSNPEKP HHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCC HMIFTTIFVVYGVLRYNYIINTTNENNPTDIVLKDNALKINVILWIITCLIILIF HHHHHHHHHHHHHHHHHEEEECCCCCCCCEEEEECCCEEHHHHHHHHHHHHHHHC >Mature Secondary Structure MKQTNTSIRLLTKISDYIKLMRIKQYIKNFFVFSAIIFSNNILNINLFLNTFIAFVCFCL CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHH MSSSVYALNDAIDMDKDKKHPKKCNRPVASGRISKKSANILFVVLALTSVCLSTVVSFNL HCCCCEEEHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH SIILSLYLINNILYSLKLKNIILLDVFSISLGFILRVYAGCVAISVSLSNWIILCTFFLS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHH LYLALGKRKKEIETLRDDAVEHRKILEDYDIENLNQMMIVILSSTIVCYALYSTSNPEKP HHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCC HMIFTTIFVVYGVLRYNYIINTTNENNPTDIVLKDNALKINVILWIITCLIILIF HHHHHHHHHHHHHHHHHEEEECCCCCCCCEEEEECCCEEHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]