Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
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Accession | NC_008825 |
Length | 4,044,195 |
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The map label for this gene is 124265590
Identifier: 124265590
GI number: 124265590
Start: 431960
End: 434377
Strand: Direct
Name: 124265590
Synonym: Mpe_A0397
Alternate gene names: NA
Gene position: 431960-434377 (Clockwise)
Preceding gene: 124265588
Following gene: 124265591
Centisome position: 10.68
GC content: 65.51
Gene sequence:
>2418_bases ATGGAAAAGATTGACCTGCGACGCAAGCTGGCGCGATTTGCACTGGGGAACCGGTGGGCGATCCTGGTGGTGATGGGGCT GATCACGGCGTTCTTTGCGGTGGGCCTGGTGCGCGTGGACGTGAAGACCATCTTCTCGGACCTGTTCCCGAAGAACCACC CCTTCGTGCAGGTCTACAAGGACCACCCCAACTTCGGCAATCCGCTGACCGTCACGCTGATGATCAAGCGTGTCGATGGC AAGGACGTGTTCCAGGCCGACACGCTCGAGAAGATCTGGCGCATCTCGCGCGACATCGACCTCACGCCCGGGGTCGACCA CGACCAGATCCTCTCCATCGCCACCTCCAAGGCGCGCTACACCGTCATCACCCCCGACGGCATCTTCTCGCAGCCCATCA TGGACGACGAGCTGCCCAAGACGGCAGAGCAGCTCGCCGAGATCCGCCGCCGCGTCGACGAATCCCCCGGAGCCAACACC TTCCTCGTGTCCTCCGACGGCACCGCCACCATCGTCAACGCCACCTTCATCGAACAATCCGTCGACTACGGCAAGGTCTT CGACGCCGTCCAGGCCATCGTCAAGAACGAGACCGACGCTGCGCACGAGATCCACGCGGCCGGCTTCCCCGTCATGACCG GGTGGATCTACGCCTTCGGCGACAACACCCTCGAGATCTTCGCGATCACCCTGATCCTGATGTTCGGCGTGCTCGCCTTC CACATGCGCAACGTCGCCGGCATCCTCGTGCCCGTGCTCGTCAGCGCCGTCTCGGCCATCTGGGGCTTCGGCCTCGTCGG CTGGCTCGGCCTGCCCGTCGAGCCCCTGCTCATGGTCGTGCCGCTGCTGCTCATCGCCCGCTGCTTCAGCCACTGCGTGC AAGCCACCGAGCGCTACTTCGAACTCCTGCACGACGGCCACCCCAAGGACAAGGCCGCCGAACTCTCCCTCGTCTCCCTC GTCTACCCCGGCACCCTGGGCATCTTCACCGACGTGTGCGGCCTGCTCCTCGTCGCCCTCGCGCCCATCCCGGCCATGGA GCGCTTCGCCCTCTTCACCGGCCTGTGGGCGCTCAACCTCGTCCCCTGCAGCGTCTTCCTCACCCCCATCCTGCTCAGCC TCATGCCGAGGCCGAACAACATCGAGCACCTGCTCGGCAACGACCAGCACAGCGGCCCCGTCCAGCGCGGCATCCAGGGC ACGCTCGGCGGCTTCGCTGCCCTCTCCACCGGACGCAACGCCCGCTACACCGGCATCGTCTTCATCGTCCTCGGCATCGT CGCCGTCTTCCTCATGCTGCGCGTGCAGGTCGGCAACCCCGTCGAAGGCACCAACCTGCTGCGCTACGACTCCAAGTTCA ACCTCGCCGTGCGCGAGATCAACCAGCACTTCCCCGGCTCCATGACCATGGAAGTCGTGTTCGAAGGCAAGGGCAACGCC CGCATCGTGCGCCAGAGCGACACCCTCACCACGATGCGCGACCTCCAGCACTGCCTGGAGAGCAGCCCCAACCCGCCCAC GGCCACCCTGTCCTTCGCCGACCTCGCGCCCGAAGCCAACCGCGTCTTCAGCGGCGGCAACCCCAAGTGGTCGCCGCTCG ACAACGACGATGCCTCCGCCTCGGCCGCCGTCACCGGCCTCATGGCCGGCACCAACGCCAAGGCCTTCCTGCACGTCACC GACTTCGAACAGAAGAACGGCACCGTCTCGCTCTGGTACTCCAACAACAAGCAAGAGACGGTGGACACCGCGCTGGCCCA GGCCCGTGCCTGCGTCGAGAAAGTCGGCCCCGAGCACCCCACCTTCACCATCCGGCTGGCCTCCGGGGCGATCGCGCTGC AGCAATCCATCAACGACACCGTGGTGCGCTACGAAAGCCGCATCCTGCTGGCCTTGAACCTCGTCATCCTGATCGGCTGC TCGCTCGCCTACCGCTCCATCGTCGCGGGCCTGCTGCTGCTCATCCCGGTGAACCTGGCCAACGCCATGCTCACCGCCTC CATGTCGCTCGCCGGCGTCGGCCTGGACGTCAACTCGCTGCCCATCCTGGCCATCGGCATCGGGGTCGGCATCGACTACG GCATCTACCTCATGACGCGCATCTGCGAGGAATACCAGGTGGCCAACAAGGACCTGGGCGTGGCGATCCGGGTGGCGCTC AAGACCTGCGGCAAGGCCATCTTCTTCACCGCCTCGCTGATGACGATCGGGCTGGCGCCGTGGTACTTCCTGTCGGAGCT CAAGTTCCTCTCCGACACCGGGCTGCTGCTGGTGATCCTGATGCTCATCAACATGGTGCTGGCGCTGGTGCTGCTGCCGC TGCTGGTGTACCTGATCAAGCCCAAGTTCCTCGACAGCGACATGTCGGCCCTGTCCGAATCCCTGGAGAAGAAGCCTCAG ACGGCGGTGCCTGCCTGA
Upstream 100 bases:
>100_bases TGCCGCTGCGCGATGCAGCGGTCGCTGCGCGCGCTGGCCGCCCCGGGAGCGACGGCATGCGGTTACTCAACGAATGGATG AACGGATGCCCAGGTGCCTG
Downstream 100 bases:
>100_bases GCCCTGTGAGAGTGCGCCGCCCCCCGCTGGGTGGGGACTGCGAATTGTCGACAACGAAGTAGGAGACGACCATGCATATC AGAAAGTACGACCACGACTA
Product: RND efflux transporter
Products: NA
Alternate protein names: RND Superfamily Exporter; Patched Family Protein; Exporter Of RND Superfamily Protein; Efflux Transporter Hydrophobe/Amphiphile Efflux-3 Family; Exporter Of RND Superfamily Protein-Like Protein; Transporter Protein; Polyketide Cyclase/Dehydrase; Histidine Kinase; Exporter Of RND Superfamily; RND Family Multidrug Efflux Transporter; RND Superfamily Transporter; Exporters Of RND Superfamily; MMPL Domain Protein; RND Family Transporter; RND Family Efflux Transporter
Number of amino acids: Translated: 805; Mature: 805
Protein sequence:
>805_residues MEKIDLRRKLARFALGNRWAILVVMGLITAFFAVGLVRVDVKTIFSDLFPKNHPFVQVYKDHPNFGNPLTVTLMIKRVDG KDVFQADTLEKIWRISRDIDLTPGVDHDQILSIATSKARYTVITPDGIFSQPIMDDELPKTAEQLAEIRRRVDESPGANT FLVSSDGTATIVNATFIEQSVDYGKVFDAVQAIVKNETDAAHEIHAAGFPVMTGWIYAFGDNTLEIFAITLILMFGVLAF HMRNVAGILVPVLVSAVSAIWGFGLVGWLGLPVEPLLMVVPLLLIARCFSHCVQATERYFELLHDGHPKDKAAELSLVSL VYPGTLGIFTDVCGLLLVALAPIPAMERFALFTGLWALNLVPCSVFLTPILLSLMPRPNNIEHLLGNDQHSGPVQRGIQG TLGGFAALSTGRNARYTGIVFIVLGIVAVFLMLRVQVGNPVEGTNLLRYDSKFNLAVREINQHFPGSMTMEVVFEGKGNA RIVRQSDTLTTMRDLQHCLESSPNPPTATLSFADLAPEANRVFSGGNPKWSPLDNDDASASAAVTGLMAGTNAKAFLHVT DFEQKNGTVSLWYSNNKQETVDTALAQARACVEKVGPEHPTFTIRLASGAIALQQSINDTVVRYESRILLALNLVILIGC SLAYRSIVAGLLLLIPVNLANAMLTASMSLAGVGLDVNSLPILAIGIGVGIDYGIYLMTRICEEYQVANKDLGVAIRVAL KTCGKAIFFTASLMTIGLAPWYFLSELKFLSDTGLLLVILMLINMVLALVLLPLLVYLIKPKFLDSDMSALSESLEKKPQ TAVPA
Sequences:
>Translated_805_residues MEKIDLRRKLARFALGNRWAILVVMGLITAFFAVGLVRVDVKTIFSDLFPKNHPFVQVYKDHPNFGNPLTVTLMIKRVDG KDVFQADTLEKIWRISRDIDLTPGVDHDQILSIATSKARYTVITPDGIFSQPIMDDELPKTAEQLAEIRRRVDESPGANT FLVSSDGTATIVNATFIEQSVDYGKVFDAVQAIVKNETDAAHEIHAAGFPVMTGWIYAFGDNTLEIFAITLILMFGVLAF HMRNVAGILVPVLVSAVSAIWGFGLVGWLGLPVEPLLMVVPLLLIARCFSHCVQATERYFELLHDGHPKDKAAELSLVSL VYPGTLGIFTDVCGLLLVALAPIPAMERFALFTGLWALNLVPCSVFLTPILLSLMPRPNNIEHLLGNDQHSGPVQRGIQG TLGGFAALSTGRNARYTGIVFIVLGIVAVFLMLRVQVGNPVEGTNLLRYDSKFNLAVREINQHFPGSMTMEVVFEGKGNA RIVRQSDTLTTMRDLQHCLESSPNPPTATLSFADLAPEANRVFSGGNPKWSPLDNDDASASAAVTGLMAGTNAKAFLHVT DFEQKNGTVSLWYSNNKQETVDTALAQARACVEKVGPEHPTFTIRLASGAIALQQSINDTVVRYESRILLALNLVILIGC SLAYRSIVAGLLLLIPVNLANAMLTASMSLAGVGLDVNSLPILAIGIGVGIDYGIYLMTRICEEYQVANKDLGVAIRVAL KTCGKAIFFTASLMTIGLAPWYFLSELKFLSDTGLLLVILMLINMVLALVLLPLLVYLIKPKFLDSDMSALSESLEKKPQ TAVPA >Mature_805_residues MEKIDLRRKLARFALGNRWAILVVMGLITAFFAVGLVRVDVKTIFSDLFPKNHPFVQVYKDHPNFGNPLTVTLMIKRVDG KDVFQADTLEKIWRISRDIDLTPGVDHDQILSIATSKARYTVITPDGIFSQPIMDDELPKTAEQLAEIRRRVDESPGANT FLVSSDGTATIVNATFIEQSVDYGKVFDAVQAIVKNETDAAHEIHAAGFPVMTGWIYAFGDNTLEIFAITLILMFGVLAF HMRNVAGILVPVLVSAVSAIWGFGLVGWLGLPVEPLLMVVPLLLIARCFSHCVQATERYFELLHDGHPKDKAAELSLVSL VYPGTLGIFTDVCGLLLVALAPIPAMERFALFTGLWALNLVPCSVFLTPILLSLMPRPNNIEHLLGNDQHSGPVQRGIQG TLGGFAALSTGRNARYTGIVFIVLGIVAVFLMLRVQVGNPVEGTNLLRYDSKFNLAVREINQHFPGSMTMEVVFEGKGNA RIVRQSDTLTTMRDLQHCLESSPNPPTATLSFADLAPEANRVFSGGNPKWSPLDNDDASASAAVTGLMAGTNAKAFLHVT DFEQKNGTVSLWYSNNKQETVDTALAQARACVEKVGPEHPTFTIRLASGAIALQQSINDTVVRYESRILLALNLVILIGC SLAYRSIVAGLLLLIPVNLANAMLTASMSLAGVGLDVNSLPILAIGIGVGIDYGIYLMTRICEEYQVANKDLGVAIRVAL KTCGKAIFFTASLMTIGLAPWYFLSELKFLSDTGLLLVILMLINMVLALVLLPLLVYLIKPKFLDSDMSALSESLEKKPQ TAVPA
Specific function: Unknown
COG id: COG1033
COG function: function code R; Predicted exporters of the RND superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 87619; Mature: 87619
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: PS50156 SSD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKIDLRRKLARFALGNRWAILVVMGLITAFFAVGLVRVDVKTIFSDLFPKNHPFVQVYK CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE DHPNFGNPLTVTLMIKRVDGKDVFQADTLEKIWRISRDIDLTPGVDHDQILSIATSKARY CCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHEECCCEE TVITPDGIFSQPIMDDELPKTAEQLAEIRRRVDESPGANTFLVSSDGTATIVNATFIEQS EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEHHHHHHC VDYGKVFDAVQAIVKNETDAAHEIHAAGFPVMTGWIYAFGDNTLEIFAITLILMFGVLAF CCHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHCEEEEECCCHHHHHHHHHHHHHHHHHH HMRNVAGILVPVLVSAVSAIWGFGLVGWLGLPVEPLLMVVPLLLIARCFSHCVQATERYF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH ELLHDGHPKDKAAELSLVSLVYPGTLGIFTDVCGLLLVALAPIPAMERFALFTGLWALNL HHHHCCCCCCHHHHHEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH VPCSVFLTPILLSLMPRPNNIEHLLGNDQHSGPVQRGIQGTLGGFAALSTGRNARYTGIV HHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCHHHHCCHHHHHHHHHHCCCCCCCHHHHH FIVLGIVAVFLMLRVQVGNPVEGTNLLRYDSKFNLAVREINQHFPGSMTMEVVFEGKGNA HHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCEEEEEEEECCCCE RIVRQSDTLTTMRDLQHCLESSPNPPTATLSFADLAPEANRVFSGGNPKWSPLDNDDASA EEEECCCHHHHHHHHHHHHHCCCCCCCEEEEHHHCCCCHHHEECCCCCCCCCCCCCCCCH SAAVTGLMAGTNAKAFLHVTDFEQKNGTVSLWYSNNKQETVDTALAQARACVEKVGPEHP HHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC TFTIRLASGAIALQQSINDTVVRYESRILLALNLVILIGCSLAYRSIVAGLLLLIPVNLA EEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NAMLTASMSLAGVGLDVNSLPILAIGIGVGIDYGIYLMTRICEEYQVANKDLGVAIRVAL HHHHHHHHHHEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHH KTCGKAIFFTASLMTIGLAPWYFLSELKFLSDTGLLLVILMLINMVLALVLLPLLVYLIK HHHCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC PKFLDSDMSALSESLEKKPQTAVPA CCCCCHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MEKIDLRRKLARFALGNRWAILVVMGLITAFFAVGLVRVDVKTIFSDLFPKNHPFVQVYK CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE DHPNFGNPLTVTLMIKRVDGKDVFQADTLEKIWRISRDIDLTPGVDHDQILSIATSKARY CCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHEECCCEE TVITPDGIFSQPIMDDELPKTAEQLAEIRRRVDESPGANTFLVSSDGTATIVNATFIEQS EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEHHHHHHC VDYGKVFDAVQAIVKNETDAAHEIHAAGFPVMTGWIYAFGDNTLEIFAITLILMFGVLAF CCHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHCEEEEECCCHHHHHHHHHHHHHHHHHH HMRNVAGILVPVLVSAVSAIWGFGLVGWLGLPVEPLLMVVPLLLIARCFSHCVQATERYF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH ELLHDGHPKDKAAELSLVSLVYPGTLGIFTDVCGLLLVALAPIPAMERFALFTGLWALNL HHHHCCCCCCHHHHHEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH VPCSVFLTPILLSLMPRPNNIEHLLGNDQHSGPVQRGIQGTLGGFAALSTGRNARYTGIV HHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCHHHHCCHHHHHHHHHHCCCCCCCHHHHH FIVLGIVAVFLMLRVQVGNPVEGTNLLRYDSKFNLAVREINQHFPGSMTMEVVFEGKGNA HHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCEEEEEEEECCCCE RIVRQSDTLTTMRDLQHCLESSPNPPTATLSFADLAPEANRVFSGGNPKWSPLDNDDASA EEEECCCHHHHHHHHHHHHHCCCCCCCEEEEHHHCCCCHHHEECCCCCCCCCCCCCCCCH SAAVTGLMAGTNAKAFLHVTDFEQKNGTVSLWYSNNKQETVDTALAQARACVEKVGPEHP HHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC TFTIRLASGAIALQQSINDTVVRYESRILLALNLVILIGCSLAYRSIVAGLLLLIPVNLA EEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NAMLTASMSLAGVGLDVNSLPILAIGIGVGIDYGIYLMTRICEEYQVANKDLGVAIRVAL HHHHHHHHHHEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHH KTCGKAIFFTASLMTIGLAPWYFLSELKFLSDTGLLLVILMLINMVLALVLLPLLVYLIK HHHCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC PKFLDSDMSALSESLEKKPQTAVPA CCCCCHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA