Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
---|---|
Accession | NC_008825 |
Length | 4,044,195 |
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The map label for this gene is prpE [H]
Identifier: 124265588
GI number: 124265588
Start: 427626
End: 429521
Strand: Direct
Name: prpE [H]
Synonym: Mpe_A0395
Alternate gene names: 124265588
Gene position: 427626-429521 (Clockwise)
Preceding gene: 124265587
Following gene: 124265590
Centisome position: 10.57
GC content: 68.72
Gene sequence:
>1896_bases ATGACCGACTACGCCACCTTCTACCGCCGCTCGATCGAAGACCCGAAGGGTTTCTGGGCCGAGCAGGCCGAGCTGATCGA CTGGCACCGCCCGTTCGACGAAGTGCTCGACGACAGCCGGCCGCCCTTCACCCGCTGGTTCGTCGGCGGCCAGACCAACC TCTGCCACAACGCCGTCGACCGCCACGCCGCCCGGCGCCCCGACGACAACGCCCTCATCTGGGTCTCCACCGAAGTCGGT CAGGAACGCACCTACAGCTACGCCCAACTCCAGCGCGAAGTCGAACGCATGGCCGCCGGCCTCGTCGAACTCGGCGTCGG CCAGGGCGACCGCGTCCTCATCTACATGCCCATGATCCCCGAGGCCGCCTTCGCCATGCTCGCCTGCGTGCGCATCGGCG CCATCCACTCCGTCGTCTTCGGCGGCTTCGCCAGCGTCAGCCTCGCCAGCCGCATCGACGACGCCCAACCCAAACTCATC GTCAGCGCCGACGCCGGCAGCCGCGCCGGCAAAGTCGTCCCCTACAAACCCCTCCTCGACGAAGCCATCCGCCTGGCCAA GAACAAACCCCGGCACGTCCTCATGGTCGACCGCGGCCTCGCCCCCAGCCAACCCGTCGAAGGCCGCGACATCGACTACG CCACCCTCAGGGCGCGCCACCTCGACAGCCGCGTCCCCTGCACCTGGGTCGACGCCACCCACCCCAGCTACACCCTCTAC ACCAGCGGCACCACCGGCACCCCCAAGGGCGTACAGCGCGACACCGGCGGCTACGCCGTCGCGCTGGCCGCCAGCATGAA ACACATCTACCTCGGCAACGCCGGCGAAACCTACTTCTCCACCAGCGACATCGGCTGGGTCGTCGGCCACAGCTACATCG TCTACGGCCCGCTCCTCGCCGGCATGGCCACCATCATGTACGAAGGCCTGCCCATCCGCCCCGACGCCGCCATCTGGTGG AGCCTGGTCGAGAAATACAAAGTCACCGCCATGTTCAGCGCCCCCACCGCCGTGCGCGTGCTCAAGAAACAAGACCCCGC GGCCCTCAAGAAACACGACCTCAGCAGCCTGCGCGCCCTGTTCCTGGCCGGAGAGCCGCTCGACGAACCCACCGCCCAGT GGATCGCCGACGCCCTGGGCGTGCCCATCGTCGACAACTACTGGCAGACCGAATCCGGCTGGCCCATCCTCAGCATCGCC AACGGCGTGCAGCGCCAGCCCAGCAAGTTCGGCAGCCCCGGCATCCCCACCTACGGCTACAAGGTCAAGCTCGTCGACGA CGCCAGCGGCGAAGAACTGCACGGCGCCCACCAGAAAGGCGTGCTCGTGGTCGAAGGCCCGCTGCCGCCCGGCTTCATGC AGACCGTCTGGCGCGACGACGACCGCTTCGTCAACACCTACTGGAAAAGCGTGCCCGGCCAGAGCGTCTACAGCAGCTTC GACTGGGGCATCCGGGACGAAGACGGCTACTACTACATCCTCGGGCGCACCGACGACGTCATCAACGTCGCCGGGCACCG GCTGGGCACCCGCGAGATCGAGGAAAGCGTCTCCAGCCACGCCAACGTGGCCGAAGTGGCGGTGGTCGGGGTGGCCGATC AGCTCAAGGGCCAGGTGGCCGTGGCCTTCGTGGTGCCCAAGGACGCGCGGGGGCTGGAGGAGCCGCAGGCGCGGCTGAAG CTCGAGGGCGACATCATGAAGACGGTGGACCAGCAGCTCGGGGCGGTGGCGAGGCCGGCGCGGGTGCACTTCGTGACGCT GCTGCCCAAGACCCGCTCGGGCAAGCTGCTGCGCCGTGCGCTGCAGGCGGTGGCCGAGGGCCGCGACCCGGGCGACCTGA CCACCATCGAGGACCCCACGGCCTTGCAGGCGATCCGGGAGTTGCTCGGGCGGTGA
Upstream 100 bases:
>100_bases TCGGCGGCTACTGGGCCACGCAGATCCTGCCGCTGATGGACGCCGCGTCCTACCCGGGCTTCGTGGAGTTCGAGTCCACC GTCTACCAGCACCGCAGCGC
Downstream 100 bases:
>100_bases GGCAGGGGGCGGTGGCCGCGCGGCGGCCACCGTTCAGTGGATGCCGTCGCGCGCGATCGGCCGCTCGTCGTGGCCCGCCT GGGTGAACTCGCTCTGGTCG
Product: propionyl-CoA synthetase
Products: NA
Alternate protein names: Propionyl-CoA synthetase [H]
Number of amino acids: Translated: 631; Mature: 630
Protein sequence:
>631_residues MTDYATFYRRSIEDPKGFWAEQAELIDWHRPFDEVLDDSRPPFTRWFVGGQTNLCHNAVDRHAARRPDDNALIWVSTEVG QERTYSYAQLQREVERMAAGLVELGVGQGDRVLIYMPMIPEAAFAMLACVRIGAIHSVVFGGFASVSLASRIDDAQPKLI VSADAGSRAGKVVPYKPLLDEAIRLAKNKPRHVLMVDRGLAPSQPVEGRDIDYATLRARHLDSRVPCTWVDATHPSYTLY TSGTTGTPKGVQRDTGGYAVALAASMKHIYLGNAGETYFSTSDIGWVVGHSYIVYGPLLAGMATIMYEGLPIRPDAAIWW SLVEKYKVTAMFSAPTAVRVLKKQDPAALKKHDLSSLRALFLAGEPLDEPTAQWIADALGVPIVDNYWQTESGWPILSIA NGVQRQPSKFGSPGIPTYGYKVKLVDDASGEELHGAHQKGVLVVEGPLPPGFMQTVWRDDDRFVNTYWKSVPGQSVYSSF DWGIRDEDGYYYILGRTDDVINVAGHRLGTREIEESVSSHANVAEVAVVGVADQLKGQVAVAFVVPKDARGLEEPQARLK LEGDIMKTVDQQLGAVARPARVHFVTLLPKTRSGKLLRRALQAVAEGRDPGDLTTIEDPTALQAIRELLGR
Sequences:
>Translated_631_residues MTDYATFYRRSIEDPKGFWAEQAELIDWHRPFDEVLDDSRPPFTRWFVGGQTNLCHNAVDRHAARRPDDNALIWVSTEVG QERTYSYAQLQREVERMAAGLVELGVGQGDRVLIYMPMIPEAAFAMLACVRIGAIHSVVFGGFASVSLASRIDDAQPKLI VSADAGSRAGKVVPYKPLLDEAIRLAKNKPRHVLMVDRGLAPSQPVEGRDIDYATLRARHLDSRVPCTWVDATHPSYTLY TSGTTGTPKGVQRDTGGYAVALAASMKHIYLGNAGETYFSTSDIGWVVGHSYIVYGPLLAGMATIMYEGLPIRPDAAIWW SLVEKYKVTAMFSAPTAVRVLKKQDPAALKKHDLSSLRALFLAGEPLDEPTAQWIADALGVPIVDNYWQTESGWPILSIA NGVQRQPSKFGSPGIPTYGYKVKLVDDASGEELHGAHQKGVLVVEGPLPPGFMQTVWRDDDRFVNTYWKSVPGQSVYSSF DWGIRDEDGYYYILGRTDDVINVAGHRLGTREIEESVSSHANVAEVAVVGVADQLKGQVAVAFVVPKDARGLEEPQARLK LEGDIMKTVDQQLGAVARPARVHFVTLLPKTRSGKLLRRALQAVAEGRDPGDLTTIEDPTALQAIRELLGR >Mature_630_residues TDYATFYRRSIEDPKGFWAEQAELIDWHRPFDEVLDDSRPPFTRWFVGGQTNLCHNAVDRHAARRPDDNALIWVSTEVGQ ERTYSYAQLQREVERMAAGLVELGVGQGDRVLIYMPMIPEAAFAMLACVRIGAIHSVVFGGFASVSLASRIDDAQPKLIV SADAGSRAGKVVPYKPLLDEAIRLAKNKPRHVLMVDRGLAPSQPVEGRDIDYATLRARHLDSRVPCTWVDATHPSYTLYT SGTTGTPKGVQRDTGGYAVALAASMKHIYLGNAGETYFSTSDIGWVVGHSYIVYGPLLAGMATIMYEGLPIRPDAAIWWS LVEKYKVTAMFSAPTAVRVLKKQDPAALKKHDLSSLRALFLAGEPLDEPTAQWIADALGVPIVDNYWQTESGWPILSIAN GVQRQPSKFGSPGIPTYGYKVKLVDDASGEELHGAHQKGVLVVEGPLPPGFMQTVWRDDDRFVNTYWKSVPGQSVYSSFD WGIRDEDGYYYILGRTDDVINVAGHRLGTREIEESVSSHANVAEVAVVGVADQLKGQVAVAFVVPKDARGLEEPQARLKL EGDIMKTVDQQLGAVARPARVHFVTLLPKTRSGKLLRRALQAVAEGRDPGDLTTIEDPTALQAIRELLGR
Specific function: Catalyzes the synthesis of propionyl-CoA from propionate and CoA. Also converts acetate to acetyl-CoA but with a lower specific activity [H]
COG id: COG0365
COG function: function code I; Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]
Homologues:
Organism=Homo sapiens, GI13375727, Length=635, Percent_Identity=43.4645669291339, Blast_Score=513, Evalue=1e-145, Organism=Homo sapiens, GI8923896, Length=659, Percent_Identity=37.1775417298938, Blast_Score=414, Evalue=1e-115, Organism=Homo sapiens, GI253970489, Length=675, Percent_Identity=36.2962962962963, Blast_Score=409, Evalue=1e-114, Organism=Homo sapiens, GI28416953, Length=636, Percent_Identity=36.7924528301887, Blast_Score=397, Evalue=1e-110, Organism=Homo sapiens, GI38505220, Length=565, Percent_Identity=26.9026548672566, Blast_Score=179, Evalue=6e-45, Organism=Homo sapiens, GI42544132, Length=546, Percent_Identity=26.3736263736264, Blast_Score=166, Evalue=5e-41, Organism=Homo sapiens, GI122937307, Length=572, Percent_Identity=26.3986013986014, Blast_Score=160, Evalue=3e-39, Organism=Homo sapiens, GI31982927, Length=652, Percent_Identity=24.2331288343558, Blast_Score=156, Evalue=6e-38, Organism=Homo sapiens, GI58082049, Length=557, Percent_Identity=25.8527827648115, Blast_Score=152, Evalue=1e-36, Organism=Homo sapiens, GI115511026, Length=560, Percent_Identity=25.7142857142857, Blast_Score=150, Evalue=3e-36, Organism=Homo sapiens, GI157311624, Length=559, Percent_Identity=25.5813953488372, Blast_Score=150, Evalue=5e-36, Organism=Homo sapiens, GI157311622, Length=559, Percent_Identity=25.5813953488372, Blast_Score=150, Evalue=5e-36, Organism=Homo sapiens, GI42544134, Length=372, Percent_Identity=23.6559139784946, Blast_Score=96, Evalue=1e-19, Organism=Homo sapiens, GI195947378, Length=488, Percent_Identity=21.3114754098361, Blast_Score=94, Evalue=4e-19, Organism=Homo sapiens, GI187761345, Length=399, Percent_Identity=23.8095238095238, Blast_Score=77, Evalue=5e-14, Organism=Homo sapiens, GI187761343, Length=399, Percent_Identity=23.8095238095238, Blast_Score=77, Evalue=5e-14, Organism=Escherichia coli, GI1786529, Length=626, Percent_Identity=63.7380191693291, Blast_Score=822, Evalue=0.0, Organism=Escherichia coli, GI1790505, Length=633, Percent_Identity=39.652448657188, Blast_Score=452, Evalue=1e-128, Organism=Escherichia coli, GI221142682, Length=544, Percent_Identity=21.3235294117647, Blast_Score=120, Evalue=2e-28, Organism=Escherichia coli, GI145693145, Length=545, Percent_Identity=23.4862385321101, Blast_Score=107, Evalue=2e-24, Organism=Escherichia coli, GI1788107, Length=587, Percent_Identity=24.3611584327087, Blast_Score=96, Evalue=7e-21, Organism=Escherichia coli, GI1786810, Length=527, Percent_Identity=22.011385199241, Blast_Score=81, Evalue=2e-16, Organism=Escherichia coli, GI1786801, Length=529, Percent_Identity=22.4952741020794, Blast_Score=75, Evalue=1e-14, Organism=Caenorhabditis elegans, GI71982997, Length=650, Percent_Identity=36, Blast_Score=364, Evalue=1e-101, Organism=Caenorhabditis elegans, GI71983001, Length=650, Percent_Identity=36, Blast_Score=364, Evalue=1e-101, Organism=Caenorhabditis elegans, GI17531443, Length=558, Percent_Identity=26.8817204301075, Blast_Score=134, Evalue=1e-31, Organism=Caenorhabditis elegans, GI17569507, Length=655, Percent_Identity=22.2900763358779, Blast_Score=121, Evalue=1e-27, Organism=Caenorhabditis elegans, GI17557194, Length=599, Percent_Identity=24.2070116861436, Blast_Score=103, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17538037, Length=577, Percent_Identity=23.2235701906412, Blast_Score=99, Evalue=9e-21, Organism=Caenorhabditis elegans, GI71996755, Length=536, Percent_Identity=21.455223880597, Blast_Score=98, Evalue=1e-20, Organism=Caenorhabditis elegans, GI71985884, Length=581, Percent_Identity=23.2358003442341, Blast_Score=94, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17558820, Length=530, Percent_Identity=22.4528301886792, Blast_Score=94, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17560140, Length=532, Percent_Identity=21.8045112781955, Blast_Score=89, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17559526, Length=570, Percent_Identity=22.9824561403509, Blast_Score=80, Evalue=3e-15, Organism=Saccharomyces cerevisiae, GI6319264, Length=636, Percent_Identity=40.8805031446541, Blast_Score=484, Evalue=1e-137, Organism=Saccharomyces cerevisiae, GI6323182, Length=640, Percent_Identity=39.21875, Blast_Score=441, Evalue=1e-124, Organism=Saccharomyces cerevisiae, GI6319699, Length=370, Percent_Identity=22.972972972973, Blast_Score=84, Evalue=8e-17, Organism=Drosophila melanogaster, GI21355225, Length=641, Percent_Identity=40.8736349453978, Blast_Score=483, Evalue=1e-136, Organism=Drosophila melanogaster, GI24667955, Length=651, Percent_Identity=36.8663594470046, Blast_Score=397, Evalue=1e-111, Organism=Drosophila melanogaster, GI62472339, Length=561, Percent_Identity=38.1461675579323, Blast_Score=361, Evalue=1e-100, Organism=Drosophila melanogaster, GI24667959, Length=528, Percent_Identity=37.6893939393939, Blast_Score=336, Evalue=3e-92, Organism=Drosophila melanogaster, GI21355181, Length=534, Percent_Identity=26.0299625468165, Blast_Score=118, Evalue=2e-26, Organism=Drosophila melanogaster, GI24648260, Length=387, Percent_Identity=27.1317829457364, Blast_Score=86, Evalue=7e-17, Organism=Drosophila melanogaster, GI24648257, Length=372, Percent_Identity=27.4193548387097, Blast_Score=80, Evalue=3e-15, Organism=Drosophila melanogaster, GI21356947, Length=371, Percent_Identity=25.0673854447439, Blast_Score=80, Evalue=5e-15, Organism=Drosophila melanogaster, GI21358303, Length=497, Percent_Identity=22.1327967806841, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI20130357, Length=387, Percent_Identity=25.3229974160207, Blast_Score=67, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020845 - InterPro: IPR000873 - InterPro: IPR012694 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: =6.2.1.17 [H]
Molecular weight: Translated: 69405; Mature: 69273
Theoretical pI: Translated: 6.47; Mature: 6.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDYATFYRRSIEDPKGFWAEQAELIDWHRPFDEVLDDSRPPFTRWFVGGQTNLCHNAVD CCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCEEEEECCCCHHHHHHHH RHAARRPDDNALIWVSTEVGQERTYSYAQLQREVERMAAGLVELGVGQGDRVLIYMPMIP HHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC EAAFAMLACVRIGAIHSVVFGGFASVSLASRIDDAQPKLIVSADAGSRAGKVVPYKPLLD HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHH EAIRLAKNKPRHVLMVDRGLAPSQPVEGRDIDYATLRARHLDSRVPCTWVDATHPSYTLY HHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCEEEE TSGTTGTPKGVQRDTGGYAVALAASMKHIYLGNAGETYFSTSDIGWVVGHSYIVYGPLLA ECCCCCCCCCCCCCCCCEEEEEEECCCEEEECCCCCCEEECCCCCHHHCCCHHHHHHHHH GMATIMYEGLPIRPDAAIWWSLVEKYKVTAMFSAPTAVRVLKKQDPAALKKHDLSSLRAL HHHHHHHCCCCCCCCHHHHHHHHHHHEEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHH FLAGEPLDEPTAQWIADALGVPIVDNYWQTESGWPILSIANGVQRQPSKFGSPGIPTYGY HHCCCCCCCHHHHHHHHHCCCCEECCCCCCCCCCEEEEECCCCCCCCHHCCCCCCCCCCE KVKLVDDASGEELHGAHQKGVLVVEGPLPPGFMQTVWRDDDRFVNTYWKSVPGQSVYSSF EEEEEECCCCCHHCCCCCCCEEEEECCCCCHHHHHHHCCCCHHHHHHHHCCCCHHHHHHC DWGIRDEDGYYYILGRTDDVINVAGHRLGTREIEESVSSHANVAEVAVVGVADQLKGQVA CCCCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHCCCCEEHEEEEECHHHCCCCEE VAFVVPKDARGLEEPQARLKLEGDIMKTVDQQLGAVARPARVHFVTLLPKTRSGKLLRRA EEEEECCCCCCCCCCHHHEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHH LQAVAEGRDPGDLTTIEDPTALQAIRELLGR HHHHHCCCCCCCCCCCCCCHHHHHHHHHHCC >Mature Secondary Structure TDYATFYRRSIEDPKGFWAEQAELIDWHRPFDEVLDDSRPPFTRWFVGGQTNLCHNAVD CCHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCEEEEECCCCHHHHHHHH RHAARRPDDNALIWVSTEVGQERTYSYAQLQREVERMAAGLVELGVGQGDRVLIYMPMIP HHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC EAAFAMLACVRIGAIHSVVFGGFASVSLASRIDDAQPKLIVSADAGSRAGKVVPYKPLLD HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHH EAIRLAKNKPRHVLMVDRGLAPSQPVEGRDIDYATLRARHLDSRVPCTWVDATHPSYTLY HHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCEEEE TSGTTGTPKGVQRDTGGYAVALAASMKHIYLGNAGETYFSTSDIGWVVGHSYIVYGPLLA ECCCCCCCCCCCCCCCCEEEEEEECCCEEEECCCCCCEEECCCCCHHHCCCHHHHHHHHH GMATIMYEGLPIRPDAAIWWSLVEKYKVTAMFSAPTAVRVLKKQDPAALKKHDLSSLRAL HHHHHHHCCCCCCCCHHHHHHHHHHHEEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHH FLAGEPLDEPTAQWIADALGVPIVDNYWQTESGWPILSIANGVQRQPSKFGSPGIPTYGY HHCCCCCCCHHHHHHHHHCCCCEECCCCCCCCCCEEEEECCCCCCCCHHCCCCCCCCCCE KVKLVDDASGEELHGAHQKGVLVVEGPLPPGFMQTVWRDDDRFVNTYWKSVPGQSVYSSF EEEEEECCCCCHHCCCCCCCEEEEECCCCCHHHHHHHCCCCHHHHHHHHCCCCHHHHHHC DWGIRDEDGYYYILGRTDDVINVAGHRLGTREIEESVSSHANVAEVAVVGVADQLKGQVA CCCCCCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHCCCCEEHEEEEECHHHCCCCEE VAFVVPKDARGLEEPQARLKLEGDIMKTVDQQLGAVARPARVHFVTLLPKTRSGKLLRRA EEEEECCCCCCCCCCHHHEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHH LQAVAEGRDPGDLTTIEDPTALQAIRELLGR HHHHHCCCCCCCCCCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9006051; 10411265; 11677609; 10482501 [H]