Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is yjbJ [H]
Identifier: 120610028
GI number: 120610028
Start: 1466947
End: 1467792
Strand: Direct
Name: yjbJ [H]
Synonym: Aave_1341
Alternate gene names: 120610028
Gene position: 1466947-1467792 (Clockwise)
Preceding gene: 120610027
Following gene: 120610029
Centisome position: 27.41
GC content: 74.35
Gene sequence:
>846_bases ATGGCGGCGTGGCGCGTGGCGGATGGCACGGCGGTGGTCCGGCTGCGGCAGCAGCTGGCGGCGGGAGCGCGGATGGCCGC GCTGGGGCTCGCCCTGTGGCTGCCGCTGCAATCCGCCCATGCGGATCTCTGGGCCTACGTGGACGAGCGCGGCGTGACGC ATTTCGCGGCCGAGCGCATCGACGAGCGCTACAGCCTGTTCTTCCGCGGCGACGTGTTCGACTCCACCAGGGACGGACGC TCCGCGGGCACGGGCCTCGTGCCGCCCGGCATGGCGCCGGGGGCCACGCCGGAGGGCGCGCGGCGCCTGGCCTATTTCGA CATCGCGCCCGAGGTCAAGCGCGTGAAGCATTTCCTGCGCGCCTCGGCGAACCGCCACGGGCTCGACTACGAACTGCTGC AGGCCGTGATCGCGACCGAATCGGGGTTCGATCCGCAGGCGGTGTCGCCGCGCGGCGCGGTGGGGCTCATGCAGGTGATG CCGGCCACGGCCGAACGCTTCGGCGTGGCGCGCGAGGCCAGGCGTTCGGTGGAGCAGAAGCTCACCGATCCGGGCACGAA CATCGCGGCCGGCGCGCGCTACCTGAGGCACCTGATCGATCTTTTCGAGGGCCGGCTGGACCTGGCCCTGGCGGCCTACA ACGCGGGCGAGGGCGCCGTGCAGCGCGCCGGCCGCCGCATTCCCGCCTACCGCGAGACGCAGAACTACGTGAAGAGCGTG CTGGGGCTCTACGCCCTGCTCAAGCCCGCGGCGGTCGCCCCGGTGCCCGTGGCGGCGGGGCGCGGCGCCGCGGCCGGCCG GGTGCGCATGGAGCTGGCGGCGCCCGTGGTCCAGGGCGCGCCCTGA
Upstream 100 bases:
>100_bases CGAGGGCCTCATCACCAAGCTCATGGGCAAGGGAGAGGCGGCCGCGCGGCGCGAGCTGATGGAACTGCACGGCGACGCCG TGGAAGTGGATATCTGAGCC
Downstream 100 bases:
>100_bases TCTTTCGAACGACACCGCGGCGCACCCTCCGCCGCGTTCCTCTTTCCATTCTTTCCGACGCATGAGCGACAACGACCAAC CCACCCTCGACTTCTCCCAG
Product: lytic transglycosylase catalytic subunit
Products: N-Acetylmuramic Acid Residues; N-Acetylglucosamine Residues [C]
Alternate protein names: NA
Number of amino acids: Translated: 281; Mature: 280
Protein sequence:
>281_residues MAAWRVADGTAVVRLRQQLAAGARMAALGLALWLPLQSAHADLWAYVDERGVTHFAAERIDERYSLFFRGDVFDSTRDGR SAGTGLVPPGMAPGATPEGARRLAYFDIAPEVKRVKHFLRASANRHGLDYELLQAVIATESGFDPQAVSPRGAVGLMQVM PATAERFGVAREARRSVEQKLTDPGTNIAAGARYLRHLIDLFEGRLDLALAAYNAGEGAVQRAGRRIPAYRETQNYVKSV LGLYALLKPAAVAPVPVAAGRGAAAGRVRMELAAPVVQGAP
Sequences:
>Translated_281_residues MAAWRVADGTAVVRLRQQLAAGARMAALGLALWLPLQSAHADLWAYVDERGVTHFAAERIDERYSLFFRGDVFDSTRDGR SAGTGLVPPGMAPGATPEGARRLAYFDIAPEVKRVKHFLRASANRHGLDYELLQAVIATESGFDPQAVSPRGAVGLMQVM PATAERFGVAREARRSVEQKLTDPGTNIAAGARYLRHLIDLFEGRLDLALAAYNAGEGAVQRAGRRIPAYRETQNYVKSV LGLYALLKPAAVAPVPVAAGRGAAAGRVRMELAAPVVQGAP >Mature_280_residues AAWRVADGTAVVRLRQQLAAGARMAALGLALWLPLQSAHADLWAYVDERGVTHFAAERIDERYSLFFRGDVFDSTRDGRS AGTGLVPPGMAPGATPEGARRLAYFDIAPEVKRVKHFLRASANRHGLDYELLQAVIATESGFDPQAVSPRGAVGLMQVMP ATAERFGVAREARRSVEQKLTDPGTNIAAGARYLRHLIDLFEGRLDLALAAYNAGEGAVQRAGRRIPAYRETQNYVKSVL GLYALLKPAAVAPVPVAAGRGAAAGRVRMELAAPVVQGAP
Specific function: Murein-Degrading Enzyme. May Play A Role In Recycling Of Muropeptides During Cell Elongation And/Or Cell Division (By Similarity). [C]
COG id: COG0741
COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
Gene ontology:
Cell location: Attached To The Membrane By A Lipid Anchor [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transglycosylase slt family [H]
Homologues:
Organism=Escherichia coli, GI87082191, Length=122, Percent_Identity=34.4262295081967, Blast_Score=64, Evalue=9e-12, Organism=Escherichia coli, GI87082441, Length=124, Percent_Identity=38.7096774193548, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1786405, Length=167, Percent_Identity=28.1437125748503, Blast_Score=62, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008258 - InterPro: IPR000189 [H]
Pfam domain/function: PF01464 SLT [H]
EC number: 3.2.1.- [C]
Molecular weight: Translated: 30094; Mature: 29963
Theoretical pI: Translated: 10.32; Mature: 10.32
Prosite motif: PS00922 TRANSGLYCOSYLASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAWRVADGTAVVRLRQQLAAGARMAALGLALWLPLQSAHADLWAYVDERGVTHFAAERI CCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH DERYSLFFRGDVFDSTRDGRSAGTGLVPPGMAPGATPEGARRLAYFDIAPEVKRVKHFLR HHHHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCEEEEECCCHHHHHHHHHHH ASANRHGLDYELLQAVIATESGFDPQAVSPRGAVGLMQVMPATAERFGVAREARRSVEQK HCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LTDPGTNIAAGARYLRHLIDLFEGRLDLALAAYNAGEGAVQRAGRRIPAYRETQNYVKSV HCCCCCCHHHHHHHHHHHHHHHCCHHHHEEEECCCCCHHHHHCCCCCCCHHHHHHHHHHH LGLYALLKPAAVAPVPVAAGRGAAAGRVRMELAAPVVQGAP HHHHHHHCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC >Mature Secondary Structure AAWRVADGTAVVRLRQQLAAGARMAALGLALWLPLQSAHADLWAYVDERGVTHFAAERI CCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH DERYSLFFRGDVFDSTRDGRSAGTGLVPPGMAPGATPEGARRLAYFDIAPEVKRVKHFLR HHHHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCEEEEECCCHHHHHHHHHHH ASANRHGLDYELLQAVIATESGFDPQAVSPRGAVGLMQVMPATAERFGVAREARRSVEQK HCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LTDPGTNIAAGARYLRHLIDLFEGRLDLALAAYNAGEGAVQRAGRRIPAYRETQNYVKSV HCCCCCCHHHHHHHHHHHHHHHCCHHHHEEEECCCCCHHHHHCCCCCCCHHHHHHHHHHH LGLYALLKPAAVAPVPVAAGRGAAAGRVRMELAAPVVQGAP HHHHHHHCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Muramic Acid [C]
Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]
General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]