Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is parE [H]
Identifier: 120610027
GI number: 120610027
Start: 1464961
End: 1466943
Strand: Direct
Name: parE [H]
Synonym: Aave_1340
Alternate gene names: 120610027
Gene position: 1464961-1466943 (Clockwise)
Preceding gene: 120610020
Following gene: 120610028
Centisome position: 27.37
GC content: 68.58
Gene sequence:
>1983_bases ATGGCAGCCAAACCCTCTTCCGTTTCGCCCAGCGACTATTCCGAAGGTTCGATCCGCGTGCTCAAGGGCCTGGAGCCCGT GAAGCAGCGGCCGGGCATGTACACGCGCACCGACAACCCGCTGCACATCATCCAGGAAGTGCTCGACAATGCCGCCGACG AGGCCCTGGCCGGGCACGGCAAGCGCATCAAGGTCACCCTGTTCGCCGACGGCTCCGTCGGCATCGAGGACGACGGGCGC GGCATTCCGTTCGGCCTGCACCCCGAGGAAAAGGCCCCGGTGATCGAGCTGGTCTTCACGCGGCTGCACGCGGGCGGCAA GTTCGACAAGGGCAAGGGCGGCGCCTACAGCTTCTCGGGCGGCCTGCACGGCGTGGGTGTCTCGGTCACCAACGCCCTGG CATTGCGCCTGGAGGCCACGACCCACCGCGACGGACAGATCGCGCGCCTCGTGTTCGAGGGCGGCGACGTCACCGAGCCG CTCACGGCCCGGCCCCTGGCCGCGGGCGAGCGCCGCCAGGGCACCACGGTGCGTGTCTGGCCGGACGGCAGGTATTTCGA ATCCACCGCGCTGCCGATGGGCGAGCTGGTCCACCTGCTGCGCAGCAAGGCCGTGCTGATGCCGGGCGTGACGGTGTCGC TGGTCAACGAGAAGACGAAGGAGACGCAGACCTGGCAATACAAGGGCGGCCTGCGCGACTACCTGGGCCAGAGCCTGCCG GCCGACCCGGTGATCCCGCTCTTCGAGGGCGAGGGCTATGCCGACCGGCACAACGAGAGCTTCGCCGAAGGCGAGGGCGC CGCATGGTGCGTGGGCTTCACCGACGAGGGCGCGCCCGTGCGCGAGAGCTACGTCAACCTGATTCCCACCAGCGCGGGCG GCACGCACGACGCGGGCCTGCGCGACGGCCTGTTCCAGGCTGTGAAGAGCTTCATCGAGCTGCACTCGCTGCTGCCCAAG GGCGTGAAGCTGCTGCCCGAGGACGTGTTCGCCCGCGCCTCGTACGTGCTCTCGGCCAAGGTGCTGGATCCGCAGTTCCA GGGCCAGGTGAAGGAAAAACTCAATTCGCGCGATGCCGTCCGGCTGGTGTCGAGCTACGTGCGGCCCGCGCTCGAGCTGT GGCTGCACCAGCACGTGGACTACGGGCGCAAGCTCGCCGAACTCGCCATCAAGGCCGCGCAGACCCGCCAGAAGGCCGGG CAGAAGGTCGAGAAGAAGAAGGGCTCCGGCGTGGCCGTGCTGCCGGGCAAGCTCACCGACTGCGAAAGCCGCGACCTGTC GCACAACGAGGTATTCCTGGTGGAGGGCGACTCCGCCGGCGGCAGCGCCAAGATGGGCCGCGACAAGGAATGCCAGGCCG TGCTGCCGCTGCGCGGCAAGGTGCTCAACACCTGGGAGGTGGACCGCGACCGGTTGTTCGCCAACACCGAGATCCACGAC ATCTCCGTGGCGCTGGGCGTGGACCCGCACGGCCCGAACGACACGCCGGACCTCTCCGGCCTGCGCTATGGCAAGGTCTG CATCCTGTCGGACGCCGACGTGGACGGCTCGCACATCCAGGTGCTGCTGCTCACGCTGTTCTTCCGCCACTTCCCCAAGC TGATCGAGGCGGGCCACATCTACGTGGCGCGCCCGCCGCTCTACCGCGTGGACGTGCCGGCGCGCGGCAAGAAGCCGGCC TCGAAGGTCTATGCGCTGGACGACGGCGAGCTGGAGGCCATCCTCGACAAATGCGCCAAGGATGGCGTGGCGCGCGAGAA GTGCCAGATCAGCCGCTTCAAGGGGCTGGGCGAGATGAACGCCGAGCAGCTCTGGGAGACCACGCTCAACCCCGACACCC GCCGCCTGCTGCCCGTGCAGCTGGGCGACCTGGGCTTCGCCGAAACCGAGGGCCTCATCACCAAGCTCATGGGCAAGGGA GAGGCGGCCGCGCGGCGCGAGCTGATGGAACTGCACGGCGACGCCGTGGAAGTGGATATCTGA
Upstream 100 bases:
>100_bases CGCCGGCGCTTGCCGGGAAATGCGGGTTAACCCGCGTGGCAGGCGGGTGGCTGTCTTTCCATCCAGTACCGCCGGGCACA CCGCACTACAATCCGCGCCC
Downstream 100 bases:
>100_bases GCCATGGCGGCGTGGCGCGTGGCGGATGGCACGGCGGTGGTCCGGCTGCGGCAGCAGCTGGCGGCGGGAGCGCGGATGGC CGCGCTGGGGCTCGCCCTGT
Product: DNA topoisomerase IV subunit B
Products: NA
Alternate protein names: Topoisomerase IV subunit B [H]
Number of amino acids: Translated: 660; Mature: 659
Protein sequence:
>660_residues MAAKPSSVSPSDYSEGSIRVLKGLEPVKQRPGMYTRTDNPLHIIQEVLDNAADEALAGHGKRIKVTLFADGSVGIEDDGR GIPFGLHPEEKAPVIELVFTRLHAGGKFDKGKGGAYSFSGGLHGVGVSVTNALALRLEATTHRDGQIARLVFEGGDVTEP LTARPLAAGERRQGTTVRVWPDGRYFESTALPMGELVHLLRSKAVLMPGVTVSLVNEKTKETQTWQYKGGLRDYLGQSLP ADPVIPLFEGEGYADRHNESFAEGEGAAWCVGFTDEGAPVRESYVNLIPTSAGGTHDAGLRDGLFQAVKSFIELHSLLPK GVKLLPEDVFARASYVLSAKVLDPQFQGQVKEKLNSRDAVRLVSSYVRPALELWLHQHVDYGRKLAELAIKAAQTRQKAG QKVEKKKGSGVAVLPGKLTDCESRDLSHNEVFLVEGDSAGGSAKMGRDKECQAVLPLRGKVLNTWEVDRDRLFANTEIHD ISVALGVDPHGPNDTPDLSGLRYGKVCILSDADVDGSHIQVLLLTLFFRHFPKLIEAGHIYVARPPLYRVDVPARGKKPA SKVYALDDGELEAILDKCAKDGVAREKCQISRFKGLGEMNAEQLWETTLNPDTRRLLPVQLGDLGFAETEGLITKLMGKG EAAARRELMELHGDAVEVDI
Sequences:
>Translated_660_residues MAAKPSSVSPSDYSEGSIRVLKGLEPVKQRPGMYTRTDNPLHIIQEVLDNAADEALAGHGKRIKVTLFADGSVGIEDDGR GIPFGLHPEEKAPVIELVFTRLHAGGKFDKGKGGAYSFSGGLHGVGVSVTNALALRLEATTHRDGQIARLVFEGGDVTEP LTARPLAAGERRQGTTVRVWPDGRYFESTALPMGELVHLLRSKAVLMPGVTVSLVNEKTKETQTWQYKGGLRDYLGQSLP ADPVIPLFEGEGYADRHNESFAEGEGAAWCVGFTDEGAPVRESYVNLIPTSAGGTHDAGLRDGLFQAVKSFIELHSLLPK GVKLLPEDVFARASYVLSAKVLDPQFQGQVKEKLNSRDAVRLVSSYVRPALELWLHQHVDYGRKLAELAIKAAQTRQKAG QKVEKKKGSGVAVLPGKLTDCESRDLSHNEVFLVEGDSAGGSAKMGRDKECQAVLPLRGKVLNTWEVDRDRLFANTEIHD ISVALGVDPHGPNDTPDLSGLRYGKVCILSDADVDGSHIQVLLLTLFFRHFPKLIEAGHIYVARPPLYRVDVPARGKKPA SKVYALDDGELEAILDKCAKDGVAREKCQISRFKGLGEMNAEQLWETTLNPDTRRLLPVQLGDLGFAETEGLITKLMGKG EAAARRELMELHGDAVEVDI >Mature_659_residues AAKPSSVSPSDYSEGSIRVLKGLEPVKQRPGMYTRTDNPLHIIQEVLDNAADEALAGHGKRIKVTLFADGSVGIEDDGRG IPFGLHPEEKAPVIELVFTRLHAGGKFDKGKGGAYSFSGGLHGVGVSVTNALALRLEATTHRDGQIARLVFEGGDVTEPL TARPLAAGERRQGTTVRVWPDGRYFESTALPMGELVHLLRSKAVLMPGVTVSLVNEKTKETQTWQYKGGLRDYLGQSLPA DPVIPLFEGEGYADRHNESFAEGEGAAWCVGFTDEGAPVRESYVNLIPTSAGGTHDAGLRDGLFQAVKSFIELHSLLPKG VKLLPEDVFARASYVLSAKVLDPQFQGQVKEKLNSRDAVRLVSSYVRPALELWLHQHVDYGRKLAELAIKAAQTRQKAGQ KVEKKKGSGVAVLPGKLTDCESRDLSHNEVFLVEGDSAGGSAKMGRDKECQAVLPLRGKVLNTWEVDRDRLFANTEIHDI SVALGVDPHGPNDTPDLSGLRYGKVCILSDADVDGSHIQVLLLTLFFRHFPKLIEAGHIYVARPPLYRVDVPARGKKPAS KVYALDDGELEAILDKCAKDGVAREKCQISRFKGLGEMNAEQLWETTLNPDTRRLLPVQLGDLGFAETEGLITKLMGKGE AAARRELMELHGDAVEVDI
Specific function: Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule [H]
COG id: COG0187
COG function: function code L; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the type II topoisomerase family [H]
Homologues:
Organism=Homo sapiens, GI19913408, Length=649, Percent_Identity=23.8828967642527, Blast_Score=115, Evalue=1e-25, Organism=Homo sapiens, GI19913406, Length=603, Percent_Identity=23.5489220563847, Blast_Score=109, Evalue=9e-24, Organism=Escherichia coli, GI1789408, Length=655, Percent_Identity=48.0916030534351, Blast_Score=608, Evalue=1e-175, Organism=Escherichia coli, GI48994957, Length=585, Percent_Identity=38.1196581196581, Blast_Score=354, Evalue=9e-99, Organism=Caenorhabditis elegans, GI17535065, Length=563, Percent_Identity=24.1563055062167, Blast_Score=101, Evalue=1e-21, Organism=Caenorhabditis elegans, GI212645845, Length=559, Percent_Identity=25.0447227191413, Blast_Score=92, Evalue=1e-18, Organism=Caenorhabditis elegans, GI212645657, Length=150, Percent_Identity=32.6666666666667, Blast_Score=70, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6324241, Length=601, Percent_Identity=24.2928452579035, Blast_Score=112, Evalue=3e-25, Organism=Drosophila melanogaster, GI17136538, Length=350, Percent_Identity=27.4285714285714, Blast_Score=91, Evalue=2e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR020568 - InterPro: IPR014721 - InterPro: IPR001241 - InterPro: IPR013759 - InterPro: IPR002288 - InterPro: IPR013506 - InterPro: IPR013760 - InterPro: IPR018522 - InterPro: IPR005737 [H]
Pfam domain/function: PF00204 DNA_gyraseB; PF00986 DNA_gyraseB_C; PF02518 HATPase_c [H]
EC number: 5.99.1.-
Molecular weight: Translated: 71741; Mature: 71610
Theoretical pI: Translated: 6.56; Mature: 6.56
Prosite motif: PS00177 TOPOISOMERASE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAKPSSVSPSDYSEGSIRVLKGLEPVKQRPGMYTRTDNPLHIIQEVLDNAADEALAGHG CCCCCCCCCCCCCCCCCEEEECCCCHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHCCC KRIKVTLFADGSVGIEDDGRGIPFGLHPEEKAPVIELVFTRLHAGGKFDKGKGGAYSFSG CEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEECC GLHGVGVSVTNALALRLEATTHRDGQIARLVFEGGDVTEPLTARPLAAGERRQGTTVRVW CCCCCCHHHHCEEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEC PDGRYFESTALPMGELVHLLRSKAVLMPGVTVSLVNEKTKETQTWQYKGGLRDYLGQSLP CCCCEECCCCCCHHHHHHHHHHCEEECCCCEEEECCCCCCCCCCEEECCCHHHHHCCCCC ADPVIPLFEGEGYADRHNESFAEGEGAAWCVGFTDEGAPVRESYVNLIPTSAGGTHDAGL CCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHEEECCCCCCCCCHH RDGLFQAVKSFIELHSLLPKGVKLLPEDVFARASYVLSAKVLDPQFQGQVKEKLNSRDAV HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEEEEECCHHHHHHHHHHCCCHHHH RLVSSYVRPALELWLHQHVDYGRKLAELAIKAAQTRQKAGQKVEKKKGSGVAVLPGKLTD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC CESRDLSHNEVFLVEGDSAGGSAKMGRDKECQAVLPLRGKVLNTWEVDRDRLFANTEIHD CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEECCCCCEEEEEEECCCHHEEECCCEEE ISVALGVDPHGPNDTPDLSGLRYGKVCILSDADVDGSHIQVLLLTLFFRHFPKLIEAGHI EEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCE YVARPPLYRVDVPARGKKPASKVYALDDGELEAILDKCAKDGVAREKCQISRFKGLGEMN EEECCCEEEECCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCC AEQLWETTLNPDTRRLLPVQLGDLGFAETEGLITKLMGKGEAAARRELMELHGDAVEVDI HHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEC >Mature Secondary Structure AAKPSSVSPSDYSEGSIRVLKGLEPVKQRPGMYTRTDNPLHIIQEVLDNAADEALAGHG CCCCCCCCCCCCCCCCEEEECCCCHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHCCC KRIKVTLFADGSVGIEDDGRGIPFGLHPEEKAPVIELVFTRLHAGGKFDKGKGGAYSFSG CEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEECC GLHGVGVSVTNALALRLEATTHRDGQIARLVFEGGDVTEPLTARPLAAGERRQGTTVRVW CCCCCCHHHHCEEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEC PDGRYFESTALPMGELVHLLRSKAVLMPGVTVSLVNEKTKETQTWQYKGGLRDYLGQSLP CCCCEECCCCCCHHHHHHHHHHCEEECCCCEEEECCCCCCCCCCEEECCCHHHHHCCCCC ADPVIPLFEGEGYADRHNESFAEGEGAAWCVGFTDEGAPVRESYVNLIPTSAGGTHDAGL CCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHEEECCCCCCCCCHH RDGLFQAVKSFIELHSLLPKGVKLLPEDVFARASYVLSAKVLDPQFQGQVKEKLNSRDAV HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEEEEECCHHHHHHHHHHCCCHHHH RLVSSYVRPALELWLHQHVDYGRKLAELAIKAAQTRQKAGQKVEKKKGSGVAVLPGKLTD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC CESRDLSHNEVFLVEGDSAGGSAKMGRDKECQAVLPLRGKVLNTWEVDRDRLFANTEIHD CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEECCCCCEEEEEEECCCHHEEECCCEEE ISVALGVDPHGPNDTPDLSGLRYGKVCILSDADVDGSHIQVLLLTLFFRHFPKLIEAGHI EEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCE YVARPPLYRVDVPARGKKPASKVYALDDGELEAILDKCAKDGVAREKCQISRFKGLGEMN EEECCCEEEECCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCC AEQLWETTLNPDTRRLLPVQLGDLGFAETEGLITKLMGKGEAAARRELMELHGDAVEVDI HHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2170028; 8388096; 9278503; 8227000; 8980775 [H]