Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is 120610023
Identifier: 120610023
GI number: 120610023
Start: 1460652
End: 1461746
Strand: Reverse
Name: 120610023
Synonym: Aave_1336
Alternate gene names: NA
Gene position: 1461746-1460652 (Counterclockwise)
Preceding gene: 120610024
Following gene: 120610022
Centisome position: 27.31
GC content: 69.32
Gene sequence:
>1095_bases GTGAACGCTATCAATCGCCTGGGCCTCCTGGGCCTTGCCATGGCCTTGTCCGCCTGCTCCACCTCCATCCTGGACAACGA CAAGATCGACTACAAGAGCGCCACCAAGGGCTCGACGCTCGAAGTGCCGCCCGACCTGACCCAGCTCTCGCGCGATTCGC GCTACACGGTCCCGGGCGGCGTGGTGTCGGCCGCGGCCTTCGAGGCCGGCCAGGCGCAGAAGCAGCCCGGCACGGTCAAT GCCGCAGCCAGGTCGCTGGGCGACGTGCGCATCGAGCGCGACGGCAACCAGCGCTGGCTGGTGGTGAAACGCCCCGCCGA CGCGCTGTGGGAGCCGGTGCGCGACTTCTGGAACGAGAACGGCTTCGTGCTCACGATCGACCAGCCCAACCTCGGCATCA TGGAAACCGACTGGGCCGAGAACCGCGCCAAGCTGCCGCAGGACATCATCCGCTCCACCATCGGCAAGATCTTCGATTCC GTCTACTCCACCGGCGAGCGCGACAAGTTCCGCACCCGCCTGGAGCGCGGCGCCGACGGCTCCACCGAGATCTACATCAG CCACCGCGGCATGGTCGAGGTCTACAGCACCGCCCAGAAGGACAACACCGTCTGGCAGCCCCGCCCGGCCGATCCGGAAC TGGAAACCGAATTCCTGCGCCGCCTGATGGTCAAGCTCGGCGTGAGCCAGGAGGAGTCCCGCGCCGTGGCGGCCGCCCCC ATCCAGCCGCCGCCGACCGCGCGCATCGGCCGCATGGGCAACGCGCCCGTGGTGGAGCTCGACGAGAGCTTCGACCGCGC ATGGCGCCGCGTCGGGCTGGCGCTCGATCGCACGGGCTTCACCGTCGAGGAGCGCGACCGCGCCCAGGGGGTGTACTCCG TGCGCTACGTCGAGCCCACCGAGAAGAAGGATCCCGGATTCTTCGCCAAGCTGCTGGGCCGCTCGGCCGACGCCGCGCCG CCCGTCAAGTACCGCATCCAGGTGCGCACCGAAGGTGGCAGGAGCACGGTCGCGGTGCTCAATGCCGCGGGCGCACCCGA GAGCTCGGCCAACGCGGACCGCATCGTCCGCGTGCTCGCCGACGATCTGAAGTGA
Upstream 100 bases:
>100_bases CTGCGCTCCGCTGGCCTGCTCTGAAGCACGTCCGCCTCCGCCTGCGCCCGTCTTTCCCCACCGCAGCCAGCCTCCAGAGA CTCCCTCAAAGGATTTTTGC
Downstream 100 bases:
>100_bases CCGGCGCTGCCGCCCGCTGAGGAGCGACGGACCGCGTGCTGCGCTTCAAGAACCTGGGCAGCGGCAGCTCGGGCAACGCC ACCGTCGTCGAAGGGCGCTG
Product: NlpB/DapX family lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 364; Mature: 364
Protein sequence:
>364_residues MNAINRLGLLGLAMALSACSTSILDNDKIDYKSATKGSTLEVPPDLTQLSRDSRYTVPGGVVSAAAFEAGQAQKQPGTVN AAARSLGDVRIERDGNQRWLVVKRPADALWEPVRDFWNENGFVLTIDQPNLGIMETDWAENRAKLPQDIIRSTIGKIFDS VYSTGERDKFRTRLERGADGSTEIYISHRGMVEVYSTAQKDNTVWQPRPADPELETEFLRRLMVKLGVSQEESRAVAAAP IQPPPTARIGRMGNAPVVELDESFDRAWRRVGLALDRTGFTVEERDRAQGVYSVRYVEPTEKKDPGFFAKLLGRSADAAP PVKYRIQVRTEGGRSTVAVLNAAGAPESSANADRIVRVLADDLK
Sequences:
>Translated_364_residues MNAINRLGLLGLAMALSACSTSILDNDKIDYKSATKGSTLEVPPDLTQLSRDSRYTVPGGVVSAAAFEAGQAQKQPGTVN AAARSLGDVRIERDGNQRWLVVKRPADALWEPVRDFWNENGFVLTIDQPNLGIMETDWAENRAKLPQDIIRSTIGKIFDS VYSTGERDKFRTRLERGADGSTEIYISHRGMVEVYSTAQKDNTVWQPRPADPELETEFLRRLMVKLGVSQEESRAVAAAP IQPPPTARIGRMGNAPVVELDESFDRAWRRVGLALDRTGFTVEERDRAQGVYSVRYVEPTEKKDPGFFAKLLGRSADAAP PVKYRIQVRTEGGRSTVAVLNAAGAPESSANADRIVRVLADDLK >Mature_364_residues MNAINRLGLLGLAMALSACSTSILDNDKIDYKSATKGSTLEVPPDLTQLSRDSRYTVPGGVVSAAAFEAGQAQKQPGTVN AAARSLGDVRIERDGNQRWLVVKRPADALWEPVRDFWNENGFVLTIDQPNLGIMETDWAENRAKLPQDIIRSTIGKIFDS VYSTGERDKFRTRLERGADGSTEIYISHRGMVEVYSTAQKDNTVWQPRPADPELETEFLRRLMVKLGVSQEESRAVAAAP IQPPPTARIGRMGNAPVVELDESFDRAWRRVGLALDRTGFTVEERDRAQGVYSVRYVEPTEKKDPGFFAKLLGRSADAAP PVKYRIQVRTEGGRSTVAVLNAAGAPESSANADRIVRVLADDLK
Specific function: Unknown
COG id: COG3317
COG function: function code M; Uncharacterized lipoprotein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40072; Mature: 40072
Theoretical pI: Translated: 7.37; Mature: 7.37
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAINRLGLLGLAMALSACSTSILDNDKIDYKSATKGSTLEVPPDLTQLSRDSRYTVPGG CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCC VVSAAAFEAGQAQKQPGTVNAAARSLGDVRIERDGNQRWLVVKRPADALWEPVRDFWNEN HHHHHHHHCCCCCCCCCCHHHHHHHHCCEEEEECCCEEEEEEECCHHHHHHHHHHHHCCC GFVLTIDQPNLGIMETDWAENRAKLPQDIIRSTIGKIFDSVYSTGERDKFRTRLERGADG CEEEEECCCCCCEEECCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC STEIYISHRGMVEVYSTAQKDNTVWQPRPADPELETEFLRRLMVKLGVSQEESRAVAAAP CEEEEEECCCEEEEHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECC IQPPPTARIGRMGNAPVVELDESFDRAWRRVGLALDRTGFTVEERDRAQGVYSVRYVEPT CCCCCCHHHCCCCCCCEEECHHHHHHHHHHHCCEECCCCCCCHHHHHCCCEEEEEEECCC EKKDPGFFAKLLGRSADAAPPVKYRIQVRTEGGRSTVAVLNAAGAPESSANADRIVRVLA CCCCCCHHHHHHCCCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHH DDLK HHCC >Mature Secondary Structure MNAINRLGLLGLAMALSACSTSILDNDKIDYKSATKGSTLEVPPDLTQLSRDSRYTVPGG CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCC VVSAAAFEAGQAQKQPGTVNAAARSLGDVRIERDGNQRWLVVKRPADALWEPVRDFWNEN HHHHHHHHCCCCCCCCCCHHHHHHHHCCEEEEECCCEEEEEEECCHHHHHHHHHHHHCCC GFVLTIDQPNLGIMETDWAENRAKLPQDIIRSTIGKIFDSVYSTGERDKFRTRLERGADG CEEEEECCCCCCEEECCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC STEIYISHRGMVEVYSTAQKDNTVWQPRPADPELETEFLRRLMVKLGVSQEESRAVAAAP CEEEEEECCCEEEEHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECC IQPPPTARIGRMGNAPVVELDESFDRAWRRVGLALDRTGFTVEERDRAQGVYSVRYVEPT CCCCCCHHHCCCCCCCEEECHHHHHHHHHHHCCEECCCCCCCHHHHHCCCEEEEEEECCC EKKDPGFFAKLLGRSADAAPPVKYRIQVRTEGGRSTVAVLNAAGAPESSANADRIVRVLA CCCCCCHHHHHHCCCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHH DDLK HHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10710307 [H]