Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is yycJ [H]
Identifier: 120610022
GI number: 120610022
Start: 1459840
End: 1460616
Strand: Reverse
Name: yycJ [H]
Synonym: Aave_1335
Alternate gene names: 120610022
Gene position: 1460616-1459840 (Counterclockwise)
Preceding gene: 120610023
Following gene: 120610021
Centisome position: 27.29
GC content: 71.43
Gene sequence:
>777_bases GTGCTGCGCTTCAAGAACCTGGGCAGCGGCAGCTCGGGCAACGCCACCGTCGTCGAAGGGCGCTGCGGCACGCAGGTACG GCGCCTGCTCGTCGATTGCGGACTGGGGCCGCGCCAGCTGGCCGGCCGGCTCGGCGAGGCCGGCCTCGCGATCGACGACA TCGACGCGATCTTCATCACGCACGAGCATTCCGACCACGTGGGCGGCCTGCAGAAGGTCGCCCTGCGCCACCGCATTCCG GCCTGGATGAGCCACGGTACCTACACGGCCATCGGCGCGCCGGACCTGGACGGGTTGCTGCACCTCACTGCGGACGGCGA ATCCATCGATCTGGGTGCTTTCGAGGCACGCCCCTTCACCGTGCCGCACGATGCGCGCGAGCCGCTGCACCTGCGCTGCA GCGACGGAGCCACCCACATCGGGCTGCTGACGGACCTGGGCCACGCCACCGAGCACGTGCTCGCCCATCTGCGCGGCTGC CATGCGCTGCTGCTGGAGAGCAACCACGACCGCGAGATGCTCTCCGTCTCCAGCTACCCCGCCTTCCTGAAGCGGCGCAT CGGCGGCGCCTATGGCCATCTTGGCAACCACGTGGCGGCGGAGATCCTGCGCGCCGTACGGCACGACGGCCTGCGCAGCG TGGCAGCGGCCCACCTCAGTGCCCAGAACAACCGCCCGGACCTCGCCCGCGCTGCGCTCGCCGAAGCCATCGGCTGGGAG CCGGCCCGGATCGAGGTGGCGGACCCGCGCAGCGGCACCGGCTGGATCGGCGGGTGA
Upstream 100 bases:
>100_bases GCGCACCCGAGAGCTCGGCCAACGCGGACCGCATCGTCCGCGTGCTCGCCGACGATCTGAAGTGACCGGCGCTGCCGCCC GCTGAGGAGCGACGGACCGC
Downstream 100 bases:
>100_bases ACTCCACCCTTTCCTGACCGTCTGCACCACTCGCCTGGCCCGCTCCGTGGCCATGGGCAGCGCAAGGCGCGCCTGTTCTG CAGCCTGCACGCGCGGTGCG
Product: beta-lactamase domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 258; Mature: 258
Protein sequence:
>258_residues MLRFKNLGSGSSGNATVVEGRCGTQVRRLLVDCGLGPRQLAGRLGEAGLAIDDIDAIFITHEHSDHVGGLQKVALRHRIP AWMSHGTYTAIGAPDLDGLLHLTADGESIDLGAFEARPFTVPHDAREPLHLRCSDGATHIGLLTDLGHATEHVLAHLRGC HALLLESNHDREMLSVSSYPAFLKRRIGGAYGHLGNHVAAEILRAVRHDGLRSVAAAHLSAQNNRPDLARAALAEAIGWE PARIEVADPRSGTGWIGG
Sequences:
>Translated_258_residues MLRFKNLGSGSSGNATVVEGRCGTQVRRLLVDCGLGPRQLAGRLGEAGLAIDDIDAIFITHEHSDHVGGLQKVALRHRIP AWMSHGTYTAIGAPDLDGLLHLTADGESIDLGAFEARPFTVPHDAREPLHLRCSDGATHIGLLTDLGHATEHVLAHLRGC HALLLESNHDREMLSVSSYPAFLKRRIGGAYGHLGNHVAAEILRAVRHDGLRSVAAAHLSAQNNRPDLARAALAEAIGWE PARIEVADPRSGTGWIGG >Mature_258_residues MLRFKNLGSGSSGNATVVEGRCGTQVRRLLVDCGLGPRQLAGRLGEAGLAIDDIDAIFITHEHSDHVGGLQKVALRHRIP AWMSHGTYTAIGAPDLDGLLHLTADGESIDLGAFEARPFTVPHDAREPLHLRCSDGATHIGLLTDLGHATEHVLAHLRGC HALLLESNHDREMLSVSSYPAFLKRRIGGAYGHLGNHVAAEILRAVRHDGLRSVAAAHLSAQNNRPDLARAALAEAIGWE PARIEVADPRSGTGWIGG
Specific function: Unknown
COG id: COG1235
COG function: function code R; Metal-dependent hydrolases of the beta-lactamase superfamily I
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the metallo-beta-lactamase superfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 [H]
Pfam domain/function: PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 27526; Mature: 27526
Theoretical pI: Translated: 7.03; Mature: 7.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRFKNLGSGSSGNATVVEGRCGTQVRRLLVDCGLGPRQLAGRLGEAGLAIDDIDAIFIT CCEECCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCHHHHHHHHCCCCCEEECCEEEEEE HEHSDHVGGLQKVALRHRIPAWMSHGTYTAIGAPDLDGLLHLTADGESIDLGAFEARPFT ECCCCHHHHHHHHHHHHHCHHHHCCCCEEEECCCCCCCEEEEEECCCEEECCCCCCCCCC VPHDAREPLHLRCSDGATHIGLLTDLGHATEHVLAHLRGCHALLLESNHDREMLSVSSYP CCCCCCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHH AFLKRRIGGAYGHLGNHVAAEILRAVRHDGLRSVAAAHLSAQNNRPDLARAALAEAIGWE HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC PARIEVADPRSGTGWIGG CCEEEEECCCCCCCCCCC >Mature Secondary Structure MLRFKNLGSGSSGNATVVEGRCGTQVRRLLVDCGLGPRQLAGRLGEAGLAIDDIDAIFIT CCEECCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCHHHHHHHHCCCCCEEECCEEEEEE HEHSDHVGGLQKVALRHRIPAWMSHGTYTAIGAPDLDGLLHLTADGESIDLGAFEARPFT ECCCCHHHHHHHHHHHHHCHHHHCCCCEEEECCCCCCCEEEEEECCCEEECCCCCCCCCC VPHDAREPLHLRCSDGATHIGLLTDLGHATEHVLAHLRGCHALLLESNHDREMLSVSSYP CCCCCCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHH AFLKRRIGGAYGHLGNHVAAEILRAVRHDGLRSVAAAHLSAQNNRPDLARAALAEAIGWE HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC PARIEVADPRSGTGWIGG CCEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]