Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is trpA [H]
Identifier: 120609901
GI number: 120609901
Start: 1336459
End: 1337316
Strand: Reverse
Name: trpA [H]
Synonym: Aave_1214
Alternate gene names: 120609901
Gene position: 1337316-1336459 (Counterclockwise)
Preceding gene: 120609902
Following gene: 120609900
Centisome position: 24.98
GC content: 69.58
Gene sequence:
>858_bases ATGAGCGCCGACATGACGACTTCCGCGTCCACGGCACCGCTGGCCGCCCAGGGGCGCATCGCGGCGACGTTCGCCGACCT GCAGGCCCGCGGCCGCAAGGCCCTCATTCCCTACGTGACCGCCGGCTTCCCGTTCGCGGACATCACGCCCGCGCTGATGC ACGGCATGGTGGAGGCCGGCGCCGATGTGATCGAACTCGGCGTGCCGTTCTCCGATCCCATGGCCGACGGCCCGGTGATC CAGAAGGCCGGGGAGAAGGCCCTCTCCCTGGGCGTGGGCATGGCCCAGGTGCTCGGCTATGTGCGCGAGTTCCGCCAGCG CAACACGAAGACCCCGGTGGTGCTCATGGGCTACGCCAACCCGGTGGAACGCTACGACCAGCGCCACGGAGACAACGCCT TCGTGCGCGATGCGGCCGAGGCCGGCGTGGACGGGGTACTGATCGTGGATTACCCTCCCGAAGAGTGCGAGGACTTCGCA GCCCGGCTGCGCGCGCATGGCATGGACCTGATCTTCCTGCTGGCGCCCACCAGCACGGAGCAGCGCATGCAGCAGGTGGC GCGCGTCGCGAGCGGCTACGTGTACTACGTTTCGCTCAAGGGCGTGACCGGCTCGGGCGCCCTCGATACTTCGGCCGTGG AAGCCATGCTGCCGGTGATCCGCCGCCATGTGCACATCCCCGTCGGCGTGGGTTTCGGCATCCGCGATGCGGCCACCGCG CAGGCCATCGGCCGTGTCGCGGATGCCGTGGTGATCGGCAGCCGCATCATCCAACTGCTGGAAGACCAGCCCCACGAGCG GGTCGTGCCCCTGGCCGTGGACTTCCTGCGGGGGGTGCGCAAGGCGCTCGACACGTAG
Upstream 100 bases:
>100_bases GGGGCGACAAGGACATCGGCACGGTGGCGGATCTCTCCGGCGTGGATTTCTACGACCGCCCGTCCATGCGGGGCCATGCC GTCAAGGGAGGGCCCGCGGC
Downstream 100 bases:
>100_bases AATCCAGGGATCATCCCCCTGAGCGGCTTTGCCGCTTCCCCCTTCTCTCGGCTTCGCCGGGAAGGGGGACGACGCCAACG GCCCGGCCGAGCCGGTTCCG
Product: tryptophan synthase subunit alpha
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 285; Mature: 284
Protein sequence:
>285_residues MSADMTTSASTAPLAAQGRIAATFADLQARGRKALIPYVTAGFPFADITPALMHGMVEAGADVIELGVPFSDPMADGPVI QKAGEKALSLGVGMAQVLGYVREFRQRNTKTPVVLMGYANPVERYDQRHGDNAFVRDAAEAGVDGVLIVDYPPEECEDFA ARLRAHGMDLIFLLAPTSTEQRMQQVARVASGYVYYVSLKGVTGSGALDTSAVEAMLPVIRRHVHIPVGVGFGIRDAATA QAIGRVADAVVIGSRIIQLLEDQPHERVVPLAVDFLRGVRKALDT
Sequences:
>Translated_285_residues MSADMTTSASTAPLAAQGRIAATFADLQARGRKALIPYVTAGFPFADITPALMHGMVEAGADVIELGVPFSDPMADGPVI QKAGEKALSLGVGMAQVLGYVREFRQRNTKTPVVLMGYANPVERYDQRHGDNAFVRDAAEAGVDGVLIVDYPPEECEDFA ARLRAHGMDLIFLLAPTSTEQRMQQVARVASGYVYYVSLKGVTGSGALDTSAVEAMLPVIRRHVHIPVGVGFGIRDAATA QAIGRVADAVVIGSRIIQLLEDQPHERVVPLAVDFLRGVRKALDT >Mature_284_residues SADMTTSASTAPLAAQGRIAATFADLQARGRKALIPYVTAGFPFADITPALMHGMVEAGADVIELGVPFSDPMADGPVIQ KAGEKALSLGVGMAQVLGYVREFRQRNTKTPVVLMGYANPVERYDQRHGDNAFVRDAAEAGVDGVLIVDYPPEECEDFAA RLRAHGMDLIFLLAPTSTEQRMQQVARVASGYVYYVSLKGVTGSGALDTSAVEAMLPVIRRHVHIPVGVGFGIRDAATAQ AIGRVADAVVIGSRIIQLLEDQPHERVVPLAVDFLRGVRKALDT
Specific function: The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate [H]
COG id: COG0159
COG function: function code E; Tryptophan synthase alpha chain
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the trpA family [H]
Homologues:
Organism=Escherichia coli, GI1787514, Length=216, Percent_Identity=34.7222222222222, Blast_Score=129, Evalue=1e-31, Organism=Saccharomyces cerevisiae, GI6321412, Length=262, Percent_Identity=37.7862595419847, Blast_Score=197, Evalue=2e-51,
Paralogues:
None
Copy number: 280 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 3,500 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR011060 - InterPro: IPR018204 - InterPro: IPR002028 [H]
Pfam domain/function: PF00290 Trp_syntA [H]
EC number: =4.2.1.20 [H]
Molecular weight: Translated: 30398; Mature: 30267
Theoretical pI: Translated: 5.96; Mature: 5.96
Prosite motif: PS00167 TRP_SYNTHASE_ALPHA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSADMTTSASTAPLAAQGRIAATFADLQARGRKALIPYVTAGFPFADITPALMHGMVEAG CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCEEECCCCHHHCCHHHHHHHHHCC ADVIELGVPFSDPMADGPVIQKAGEKALSLGVGMAQVLGYVREFRQRNTKTPVVLMGYAN CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCC PVERYDQRHGDNAFVRDAAEAGVDGVLIVDYPPEECEDFAARLRAHGMDLIFLLAPTSTE HHHHHHHHCCCCHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHH QRMQQVARVASGYVYYVSLKGVTGSGALDTSAVEAMLPVIRRHVHIPVGVGFGIRDAATA HHHHHHHHHHCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHEECEEECCCCCCHHHHH QAIGRVADAVVIGSRIIQLLEDQPHERVVPLAVDFLRGVRKALDT HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SADMTTSASTAPLAAQGRIAATFADLQARGRKALIPYVTAGFPFADITPALMHGMVEAG CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCEEECCCCHHHCCHHHHHHHHHCC ADVIELGVPFSDPMADGPVIQKAGEKALSLGVGMAQVLGYVREFRQRNTKTPVVLMGYAN CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCC PVERYDQRHGDNAFVRDAAEAGVDGVLIVDYPPEECEDFAARLRAHGMDLIFLLAPTSTE HHHHHHHHCCCCHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHH QRMQQVARVASGYVYYVSLKGVTGSGALDTSAVEAMLPVIRRHVHIPVGVGFGIRDAATA HHHHHHHHHHCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHEECEEECCCCCCHHHHH QAIGRVADAVVIGSRIIQLLEDQPHERVVPLAVDFLRGVRKALDT HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA