Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is ureD
Identifier: 120609774
GI number: 120609774
Start: 1186165
End: 1186995
Strand: Reverse
Name: ureD
Synonym: Aave_1082
Alternate gene names: 120609774
Gene position: 1186995-1186165 (Counterclockwise)
Preceding gene: 120609775
Following gene: 120609773
Centisome position: 22.18
GC content: 74.13
Gene sequence:
>831_bases ATGACCTGGCACGCCCGCCTGCAACTGGACTACCGGCGGGAAGGCCCGCGCACCGTGGCCGGCTTCCTCCACGACGGCCC GCTGCGCATCCTGCAGAGCCTCTACCCCGAGGGCGGCGGCATCTGCCACAACGTGCTCGTGCATCCACCGGGCGGACTGG TGGGCGGGGACACGCTGGACATCGCGGCCACGGTCGCGCCGGGAGCCCACGGCCTCGTGACCACGCCGGGCGCCACGCGC TTCTACCGCTCCACCGGCGCTCCCGCGCTACAGCGCACGCAGGCGACGCTGGCCGCCGGCGCACGCCTCGAATGGCTGCC GCTGGAGGCGCTGTGCTACAGCGCCTGCCAGGCCGAGAACCGGCTCACCCTCTCGCTCTCGCCGGGCGCCGAATGCATCG CCTGGGACGTGACGGCGCTGGGCCTGCCGCACTCCGGCCAGCCCTTCGCCACGGGTCGCTTCACGCAGCACATCGAGGTG CCCGGCATCTGGCTGGAACGCGGCACCATCGATGCCGCCGACGGGCTGCTGATGGACGGCCGCCTCGGGCTGGCCGGGCA CCGCTGCCTGGCGTCGGTGTTTTTCGTGGCCGGCGAGGCCCTGCCGCGGGAACGCCGGGAGGCGGCTTTGGACGCGGCCC GCGCCGTGATCGATGCCCATGCACTGCGGGAGACCGCGGGCGCGACCAGTCCGCACCCCCAGGTGGTGGTGGTGCGCGTG CTGGCGCCCGTGGTGGAGCCGGCCATGGAGCTGCTGCGACGGGCATGGGGCGCCTGGCGCGAACACCTCTGGGGCCTGCA GCCACGCCAGCCGCGCATCTGGGCCATGTGA
Upstream 100 bases:
>100_bases TGACGCAGGTGTCCGCCGTCCGGCCCCGGGGCTCTGCGGGCCGCGGCTATCATGCGGCGCTCGCTCCAACCCACCAACGA CCGCAAGGCACCCACGACCG
Downstream 100 bases:
>100_bases AACGCGGCAGCGACGGTGGAATGACCGGAAAAGCCGGAATCGGCAGAAACACTTGCGAATAACGCTGCACTATCGGTCAT AGTTGCCGATAACGGATCAG
Product: urease accessory protein UreD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 276; Mature: 275
Protein sequence:
>276_residues MTWHARLQLDYRREGPRTVAGFLHDGPLRILQSLYPEGGGICHNVLVHPPGGLVGGDTLDIAATVAPGAHGLVTTPGATR FYRSTGAPALQRTQATLAAGARLEWLPLEALCYSACQAENRLTLSLSPGAECIAWDVTALGLPHSGQPFATGRFTQHIEV PGIWLERGTIDAADGLLMDGRLGLAGHRCLASVFFVAGEALPRERREAALDAARAVIDAHALRETAGATSPHPQVVVVRV LAPVVEPAMELLRRAWGAWREHLWGLQPRQPRIWAM
Sequences:
>Translated_276_residues MTWHARLQLDYRREGPRTVAGFLHDGPLRILQSLYPEGGGICHNVLVHPPGGLVGGDTLDIAATVAPGAHGLVTTPGATR FYRSTGAPALQRTQATLAAGARLEWLPLEALCYSACQAENRLTLSLSPGAECIAWDVTALGLPHSGQPFATGRFTQHIEV PGIWLERGTIDAADGLLMDGRLGLAGHRCLASVFFVAGEALPRERREAALDAARAVIDAHALRETAGATSPHPQVVVVRV LAPVVEPAMELLRRAWGAWREHLWGLQPRQPRIWAM >Mature_275_residues TWHARLQLDYRREGPRTVAGFLHDGPLRILQSLYPEGGGICHNVLVHPPGGLVGGDTLDIAATVAPGAHGLVTTPGATRF YRSTGAPALQRTQATLAAGARLEWLPLEALCYSACQAENRLTLSLSPGAECIAWDVTALGLPHSGQPFATGRFTQHIEVP GIWLERGTIDAADGLLMDGRLGLAGHRCLASVFFVAGEALPRERREAALDAARAVIDAHALRETAGATSPHPQVVVVRVL APVVEPAMELLRRAWGAWREHLWGLQPRQPRIWAM
Specific function: Required for maturation of urease via the functional incorporation of the urease nickel metallocenter
COG id: COG0829
COG function: function code O; Urease accessory protein UreH
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ureD family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): URED_ACIAC (A1TL40)
Other databases:
- EMBL: CP000512 - RefSeq: YP_969452.1 - STRING: A1TL40 - GeneID: 4666194 - GenomeReviews: CP000512_GR - KEGG: aav:Aave_1082 - NMPDR: fig|397945.5.peg.938 - eggNOG: COG0829 - HOGENOM: HBG711156 - OMA: RFYRSTG - ProtClustDB: CLSK722439 - BioCyc: AAVE397945:AAVE_1082-MONOMER - GO: GO:0005737 - HAMAP: MF_01384 - InterPro: IPR002669
Pfam domain/function: PF01774 UreD
EC number: NA
Molecular weight: Translated: 29713; Mature: 29582
Theoretical pI: Translated: 7.65; Mature: 7.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTWHARLQLDYRREGPRTVAGFLHDGPLRILQSLYPEGGGICHNVLVHPPGGLVGGDTLD CCEEEEEEEEECCCCCCEEEHHHCCCHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCEE IAATVAPGAHGLVTTPGATRFYRSTGAPALQRTQATLAAGARLEWLPLEALCYSACQAEN EEEEECCCCCCEEECCCCHHHHHCCCCCHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCC RLTLSLSPGAECIAWDVTALGLPHSGQPFATGRFTQHIEVPGIWLERGTIDAADGLLMDG EEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEECCEEEEECCCCCCCCCEEECC RLGLAGHRCLASVFFVAGEALPRERREAALDAARAVIDAHALRETAGATSPHPQVVVVRV CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHH LAPVVEPAMELLRRAWGAWREHLWGLQPRQPRIWAM HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure TWHARLQLDYRREGPRTVAGFLHDGPLRILQSLYPEGGGICHNVLVHPPGGLVGGDTLD CEEEEEEEEECCCCCCEEEHHHCCCHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCEE IAATVAPGAHGLVTTPGATRFYRSTGAPALQRTQATLAAGARLEWLPLEALCYSACQAEN EEEEECCCCCCEEECCCCHHHHHCCCCCHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCC RLTLSLSPGAECIAWDVTALGLPHSGQPFATGRFTQHIEVPGIWLERGTIDAADGLLMDG EEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEECCEEEEECCCCCCCCCEEECC RLGLAGHRCLASVFFVAGEALPRERREAALDAARAVIDAHALRETAGATSPHPQVVVVRV CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHH LAPVVEPAMELLRRAWGAWREHLWGLQPRQPRIWAM HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA