Definition Shewanella sp. W3-18-1 chromosome, complete genome.
Accession NC_008750
Length 4,708,380

Click here to switch to the map view.

The map label for this gene is 120597418

Identifier: 120597418

GI number: 120597418

Start: 644216

End: 645322

Strand: Direct

Name: 120597418

Synonym: Sputw3181_0587

Alternate gene names: NA

Gene position: 644216-645322 (Clockwise)

Preceding gene: 120597417

Following gene: 120597421

Centisome position: 13.68

GC content: 38.03

Gene sequence:

>1107_bases
ATGACAAGTAGGCAAAGTCAGAAAGGTGGTGATAGTTCCACTAATATTCAAGCTGAACAGCTTGTAGTCAATATGGGAAT
TGATGAGAAGCGTGCTCGTGAAATTTATCAAGAGATGAATTTGCAACTAAAAAAGGAATACACTCACGAAGCCCTAAACA
TTGCGATTTCGAGGGTAGAAGAATTTGAAAATAGCTTAATGCTTAAAATGAATTCAGTTGAAGGCGCAATGCAAGCTTTC
GCAGATCCCAGCTTCCAATTGCTACTTGTTGATGCCCAGAAAGCTGCCGCCGCAACAGAGAGAGCTGCAGATTACGACTT
GCTATCTGAACTACTAGTTCACAGATTTAAGAAAGGTGAAAATCGCACTATACGTGCTGGAATTACTCGTGCAGTTGAAA
TTGTGGATGAAATCTCGGATGAAGCTTTGCTAGGTTTAACTGTTGCTCATTCTGTTACAACATTTGTTCCAGCTACAGGT
GATATTAATATTGGCTTAGATATGCTCGATGGCCTGTTTGGTAAAATCCTTTACAATAAATTACCGAACGGCAATGAGTG
GCTAGATCACTTAGATGTTCTTAATGCTGTTCGGGTAAATTCATTTGGTAGTTTGAAAAAAATGAAGCAATATTATCCTG
AATCACTGTCAGTCTATGTAGACGTTGGTATCAAGAAAAATTCAGATAGTTACTCTCAAGCACTTGAAATACTGCGAATC
AACAATTTGCCACATGATCTGCTGATTGAACATAGCTTAAGTGATGAGTTTGTAAGGCTGCCTTTTAGTGATAAGTCGCG
AATTCAAGATACTATTTTGATTCAAAAACTTGTTTATAATGGCCTTACTCATACTGTTCCTGTGGCTTTATCTCCTGTTC
AGTTGCAAGCGATAACTGATGTGTATGATCTCTATCTAAACGATGCACAAATAAAGCAACAAAATATCAACTCTTTTATG
GAACAGTGGGAAAAGAGAGAAAATTTGAGACTGTTGCGCTCTTGGTGGGACTCTATAAATACTTCATTCCAATTAACTTC
AGTAGGAAAGGTTTTAGCCCATTCTAATGCACAAAGGTGTGACAATCAGTTACCCCCGCTTAATTAA

Upstream 100 bases:

>100_bases
TGGTTTTTTGTATCGAAGAATAATAAGCAAGTTCAAAAAGGTGGTAAGAACTCGACAAACATCCAGGTAGGAGGCAATTT
TCACATAGGGAACGATAAAA

Downstream 100 bases:

>100_bases
TACCTAGAAATATGGATATCCAAACTCAATAGTGCTTCTGATGCATTACTGCCATTCTTATTCACTTTTGCTCCATTAAC
TATAGCGAGCACTGGTTGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 367

Protein sequence:

>368_residues
MTSRQSQKGGDSSTNIQAEQLVVNMGIDEKRAREIYQEMNLQLKKEYTHEALNIAISRVEEFENSLMLKMNSVEGAMQAF
ADPSFQLLLVDAQKAAAATERAADYDLLSELLVHRFKKGENRTIRAGITRAVEIVDEISDEALLGLTVAHSVTTFVPATG
DINIGLDMLDGLFGKILYNKLPNGNEWLDHLDVLNAVRVNSFGSLKKMKQYYPESLSVYVDVGIKKNSDSYSQALEILRI
NNLPHDLLIEHSLSDEFVRLPFSDKSRIQDTILIQKLVYNGLTHTVPVALSPVQLQAITDVYDLYLNDAQIKQQNINSFM
EQWEKRENLRLLRSWWDSINTSFQLTSVGKVLAHSNAQRCDNQLPPLN

Sequences:

>Translated_368_residues
MTSRQSQKGGDSSTNIQAEQLVVNMGIDEKRAREIYQEMNLQLKKEYTHEALNIAISRVEEFENSLMLKMNSVEGAMQAF
ADPSFQLLLVDAQKAAAATERAADYDLLSELLVHRFKKGENRTIRAGITRAVEIVDEISDEALLGLTVAHSVTTFVPATG
DINIGLDMLDGLFGKILYNKLPNGNEWLDHLDVLNAVRVNSFGSLKKMKQYYPESLSVYVDVGIKKNSDSYSQALEILRI
NNLPHDLLIEHSLSDEFVRLPFSDKSRIQDTILIQKLVYNGLTHTVPVALSPVQLQAITDVYDLYLNDAQIKQQNINSFM
EQWEKRENLRLLRSWWDSINTSFQLTSVGKVLAHSNAQRCDNQLPPLN
>Mature_367_residues
TSRQSQKGGDSSTNIQAEQLVVNMGIDEKRAREIYQEMNLQLKKEYTHEALNIAISRVEEFENSLMLKMNSVEGAMQAFA
DPSFQLLLVDAQKAAAATERAADYDLLSELLVHRFKKGENRTIRAGITRAVEIVDEISDEALLGLTVAHSVTTFVPATGD
INIGLDMLDGLFGKILYNKLPNGNEWLDHLDVLNAVRVNSFGSLKKMKQYYPESLSVYVDVGIKKNSDSYSQALEILRIN
NLPHDLLIEHSLSDEFVRLPFSDKSRIQDTILIQKLVYNGLTHTVPVALSPVQLQAITDVYDLYLNDAQIKQQNINSFME
QWEKRENLRLLRSWWDSINTSFQLTSVGKVLAHSNAQRCDNQLPPLN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41584; Mature: 41453

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSRQSQKGGDSSTNIQAEQLVVNMGIDEKRAREIYQEMNLQLKKEYTHEALNIAISRVE
CCCCCCCCCCCCCCCCCHHHEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
EFENSLMLKMNSVEGAMQAFADPSFQLLLVDAQKAAAATERAADYDLLSELLVHRFKKGE
HHHHHHEEEEHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHCCHHHHHHHHHHHHHCCC
NRTIRAGITRAVEIVDEISDEALLGLTVAHSVTTFVPATGDINIGLDMLDGLFGKILYNK
CCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC
LPNGNEWLDHLDVLNAVRVNSFGSLKKMKQYYPESLSVYVDVGIKKNSDSYSQALEILRI
CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEEECEECCCHHHHHHHHHHHH
NNLPHDLLIEHSLSDEFVRLPFSDKSRIQDTILIQKLVYNGLTHTVPVALSPVQLQAITD
CCCCHHHHEECCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHH
VYDLYLNDAQIKQQNINSFMEQWEKRENLRLLRSWWDSINTSFQLTSVGKVLAHSNAQRC
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHCCCHHHH
DNQLPPLN
CCCCCCCC
>Mature Secondary Structure 
TSRQSQKGGDSSTNIQAEQLVVNMGIDEKRAREIYQEMNLQLKKEYTHEALNIAISRVE
CCCCCCCCCCCCCCCCHHHEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
EFENSLMLKMNSVEGAMQAFADPSFQLLLVDAQKAAAATERAADYDLLSELLVHRFKKGE
HHHHHHEEEEHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHCCHHHHHHHHHHHHHCCC
NRTIRAGITRAVEIVDEISDEALLGLTVAHSVTTFVPATGDINIGLDMLDGLFGKILYNK
CCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC
LPNGNEWLDHLDVLNAVRVNSFGSLKKMKQYYPESLSVYVDVGIKKNSDSYSQALEILRI
CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEEECEECCCHHHHHHHHHHHH
NNLPHDLLIEHSLSDEFVRLPFSDKSRIQDTILIQKLVYNGLTHTVPVALSPVQLQAITD
CCCCHHHHEECCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHH
VYDLYLNDAQIKQQNINSFMEQWEKRENLRLLRSWWDSINTSFQLTSVGKVLAHSNAQRC
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHCCCHHHH
DNQLPPLN
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA