Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119776417

Identifier: 119776417

GI number: 119776417

Start: 3903099

End: 3903902

Strand: Direct

Name: 119776417

Synonym: Sama_3285

Alternate gene names: NA

Gene position: 3903099-3903902 (Clockwise)

Preceding gene: 119776415

Following gene: 119776420

Centisome position: 90.64

GC content: 53.11

Gene sequence:

>804_bases
ATGTTTAAGCTATTATATACGCTCGTGTTTTGCAGCTTTGCGACCCTGTTCTCGACCACTGCCAATGCCCAGAACGAGTC
CCCCTTGGTGTTTTGTGTCGAATCCACCGAGTTTCCGCCCTTCAACTACTTTGTCCGGGACGGAAAACAAAAGACAGAGA
CCCTTGCCGGTTACGACATCGAGGTGCTCAAACACGTATTTGAAGATATTCCCTATGAAGTGATAGCCCTACCCTGGCGG
CGCTGCCTGATGTCACTGACTACAGGGGCCGTGGACGCCGTCATGAGTGCCTCAATGAATGATCAACGCCGCAGGGATTA
TATCTCATCCGCTCCCTATTATTATCTGACACCGGGGTATTTTTTTCTGAAACAAAACACTGATGCTCCCCGGGAAGTTG
CGGCCGCCGAAGAACTCTGGCAATACGGTGCCCTCTGTGGTCTTGGAGGCCATAACTACGCCAACTTTGGACTGGCGGCC
GACAAGGATGTGATGCGAATGGCCAGCTACGAACAGCTGGCGGAGACCCTGAAAATGGGCCGCTGCCGTTTTTATTTGGA
CCGGCTGGAACTGGTCGCGCCCAAGATGGCCTTGATGGACACCCCGCCCTTGCCAGCCTTGGAGAAAGGCCTGATTAACG
GCGCCGCCGCTGAGCCTTTCTATGTGCTGATTTCCCGCAAAAGTCCAAACAGCGAAAATCTGAAACTTCTTTTTGATGAG
CGTATTGCGCTGCTCAGAGCATCCGGAAAGCTCGCACAAATCCTGGAACAGGCAAACAAGCAATTGGAACCGGCCACCCG
CTAG

Upstream 100 bases:

>100_bases
CTATTTTCGAAGAAACTCATTTTTCAATCCGTCCTGCAACTGAGGCAATACGCAGATATCTTGCTATACTCAGGGGTGCG
GCTAAAGCCGGAGGGGAGTT

Downstream 100 bases:

>100_bases
TTCCGCTATTCATGCCATTGCTATATCTGATCAGTTCCGGGATGGCTACACCAAATCAAAGCCCGCCGCAGAGCGACACA
CTCTCAGGAAGAAGACATCT

Product: putative amino acid ABC transporter

Products: NA

Alternate protein names: Amino Acid ABC Transporter

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MFKLLYTLVFCSFATLFSTTANAQNESPLVFCVESTEFPPFNYFVRDGKQKTETLAGYDIEVLKHVFEDIPYEVIALPWR
RCLMSLTTGAVDAVMSASMNDQRRRDYISSAPYYYLTPGYFFLKQNTDAPREVAAAEELWQYGALCGLGGHNYANFGLAA
DKDVMRMASYEQLAETLKMGRCRFYLDRLELVAPKMALMDTPPLPALEKGLINGAAAEPFYVLISRKSPNSENLKLLFDE
RIALLRASGKLAQILEQANKQLEPATR

Sequences:

>Translated_267_residues
MFKLLYTLVFCSFATLFSTTANAQNESPLVFCVESTEFPPFNYFVRDGKQKTETLAGYDIEVLKHVFEDIPYEVIALPWR
RCLMSLTTGAVDAVMSASMNDQRRRDYISSAPYYYLTPGYFFLKQNTDAPREVAAAEELWQYGALCGLGGHNYANFGLAA
DKDVMRMASYEQLAETLKMGRCRFYLDRLELVAPKMALMDTPPLPALEKGLINGAAAEPFYVLISRKSPNSENLKLLFDE
RIALLRASGKLAQILEQANKQLEPATR
>Mature_267_residues
MFKLLYTLVFCSFATLFSTTANAQNESPLVFCVESTEFPPFNYFVRDGKQKTETLAGYDIEVLKHVFEDIPYEVIALPWR
RCLMSLTTGAVDAVMSASMNDQRRRDYISSAPYYYLTPGYFFLKQNTDAPREVAAAEELWQYGALCGLGGHNYANFGLAA
DKDVMRMASYEQLAETLKMGRCRFYLDRLELVAPKMALMDTPPLPALEKGLINGAAAEPFYVLISRKSPNSENLKLLFDE
RIALLRASGKLAQILEQANKQLEPATR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30112; Mature: 30112

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKLLYTLVFCSFATLFSTTANAQNESPLVFCVESTEFPPFNYFVRDGKQKTETLAGYDI
CHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHCCCHHHHHHCCCCH
EVLKHVFEDIPYEVIALPWRRCLMSLTTGAVDAVMSASMNDQRRRDYISSAPYYYLTPGY
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCCE
FFLKQNTDAPREVAAAEELWQYGALCGLGGHNYANFGLAADKDVMRMASYEQLAETLKMG
EEEECCCCCHHHHHHHHHHHHHHCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
RCRFYLDRLELVAPKMALMDTPPLPALEKGLINGAAAEPFYVLISRKSPNSENLKLLFDE
HHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEHHHH
RIALLRASGKLAQILEQANKQLEPATR
HHHHHHCCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MFKLLYTLVFCSFATLFSTTANAQNESPLVFCVESTEFPPFNYFVRDGKQKTETLAGYDI
CHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHCCCHHHHHHCCCCH
EVLKHVFEDIPYEVIALPWRRCLMSLTTGAVDAVMSASMNDQRRRDYISSAPYYYLTPGY
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCCE
FFLKQNTDAPREVAAAEELWQYGALCGLGGHNYANFGLAADKDVMRMASYEQLAETLKMG
EEEECCCCCHHHHHHHHHHHHHHCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
RCRFYLDRLELVAPKMALMDTPPLPALEKGLINGAAAEPFYVLISRKSPNSENLKLLFDE
HHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEHHHH
RIALLRASGKLAQILEQANKQLEPATR
HHHHHHCCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA