Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119773982

Identifier: 119773982

GI number: 119773982

Start: 1029230

End: 1029682

Strand: Reverse

Name: 119773982

Synonym: Sama_0845

Alternate gene names: NA

Gene position: 1029682-1029230 (Counterclockwise)

Preceding gene: 119773983

Following gene: 119773981

Centisome position: 23.91

GC content: 56.29

Gene sequence:

>453_bases
GTGAACAAATGTTACCATGCGGCCACAATCGGGCCGTGCCTTTTGCACGCTATTTGCCCCACCGAGAGAGTGCTATCCAT
GACCAAGAAAACACTGGCGCAAATCACCGCCATGACACCCGAAGCCCGCTACGACTATCTGGTTACCGAAGTTAAAGAAC
ATAAGGAAATCTGGACGTTGCAGGATCAGGATGGTTGCGTAATGCTGACCACAGATGACGATGACTGCATCCCAATGTGG
CCCTCAGAAGAGGCTGCAGCACTGTGGGCAGTGGACGAGTGGCAGGACTGCGAACCCCTGTCCATCCCACTCAATGAGTG
GCTGGAACGCTGGGTAGTGGGTATGCAGGACGACGATCTTCAGGTGGCGGTATTCCCGGTTCAGGATGATTTGGGCGTAG
TGGTGCCCCCCTGGGAGCTTGAGAGCCGCCTGCAGCCCAAGACCCGCCACTGA

Upstream 100 bases:

>100_bases
CAAAGAAACGACGGCCGCTGCGGCAGCTCAGCCCCTGTAGATTGGGCCCGGTCAGGATGATTCCCGGGGAATGGCAAACC
ACAGCACTCTTTTTCCCCGG

Downstream 100 bases:

>100_bases
TTAAGGGGAAACCATGACAGAGCAGAGCATACCCAAGGCAACGCCCATGCCCAAGCGACTGATAGCATTGATGTTGCTCT
ATACTGCTGCGGCAGTGAGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MNKCYHAATIGPCLLHAICPTERVLSMTKKTLAQITAMTPEARYDYLVTEVKEHKEIWTLQDQDGCVMLTTDDDDCIPMW
PSEEAAALWAVDEWQDCEPLSIPLNEWLERWVVGMQDDDLQVAVFPVQDDLGVVVPPWELESRLQPKTRH

Sequences:

>Translated_150_residues
MNKCYHAATIGPCLLHAICPTERVLSMTKKTLAQITAMTPEARYDYLVTEVKEHKEIWTLQDQDGCVMLTTDDDDCIPMW
PSEEAAALWAVDEWQDCEPLSIPLNEWLERWVVGMQDDDLQVAVFPVQDDLGVVVPPWELESRLQPKTRH
>Mature_150_residues
MNKCYHAATIGPCLLHAICPTERVLSMTKKTLAQITAMTPEARYDYLVTEVKEHKEIWTLQDQDGCVMLTTDDDDCIPMW
PSEEAAALWAVDEWQDCEPLSIPLNEWLERWVVGMQDDDLQVAVFPVQDDLGVVVPPWELESRLQPKTRH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17210; Mature: 17210

Theoretical pI: Translated: 4.11; Mature: 4.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
8.0 %Cys+Met (Translated Protein)
4.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
8.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKCYHAATIGPCLLHAICPTERVLSMTKKTLAQITAMTPEARYDYLVTEVKEHKEIWTL
CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEEE
QDQDGCVMLTTDDDDCIPMWPSEEAAALWAVDEWQDCEPLSIPLNEWLERWVVGMQDDDL
ECCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCC
QVAVFPVQDDLGVVVPPWELESRLQPKTRH
EEEEEEECCCCCEEECCCCCHHCCCCCCCC
>Mature Secondary Structure
MNKCYHAATIGPCLLHAICPTERVLSMTKKTLAQITAMTPEARYDYLVTEVKEHKEIWTL
CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEEE
QDQDGCVMLTTDDDDCIPMWPSEEAAALWAVDEWQDCEPLSIPLNEWLERWVVGMQDDDL
ECCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCC
QVAVFPVQDDLGVVVPPWELESRLQPKTRH
EEEEEEECCCCCEEECCCCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA